Rmu_sc0003393.1_g000012

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003393.1
OG0000143
Physical Location & Seq
Forward (+)
76363 .. 82124
5762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003393.1_g000012.1.cds

Sequence Viewer

Length: 735 bp
atgcaaaagaagaagcttaatgccagcttgaatcctcaaaagaagaagcgtgataaacgtggtggtacaaagaggtgtggttgcccatttcgcttgaagggcaaaaatgttggtcctggggatgagtggatccttgaggttgtaaatgggatgcataaccatcatgctgcaaagtatcctgaagggcattcctatctgaggctattaaccaaggaagaaaataatttgttggttgatatgtcaaagaacctggtaaatccaaaagaaatattatacactttaaagcaaaatgatccactcaattcaagcactatgaagacaatctacaatgctcgacatattcaaagggtaattgaaaaagctggaatgtcagagatgcaaatacttctaaacaatttgcagaaatacaattatgtggaatggcataggagttatggcacaaagaacattgaggaggaggaggagagtagggagggaaaggaagaagcttttcttctccaaaagctcgatttggagactgagagtgttgaaggagatctttctctccctactacaccagtctgcagattcgtcaaatggatactgtcacccgatgttgctgaaggacatcaatttaaaactgctactttgttggcagacttggcaggtgcaagggttgatgtttgtggccacccgcatccaactattgtgttggagtggatggggaagcatgcactggcaatttttgttctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

244

Amino Acids

27.84

Weight (kDa)

8.74

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 635
Acc36I ACCTGC 1 cut(s) 635
AciI CCGC 1 cut(s) 674
AclWI GGATC 3 cut(s) 124, 137, 287
AcoI YGGCCR 1 cut(s) 667
AcuI CTGAAG 2 cut(s) 201, 621
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 6 cut(s) 31, 97, 306, 344, 356, 530
AjnI CCWGG 2 cut(s) 115, 249
AluBI AGCT 5 cut(s) 16, 27, 362, 488, 505
AluI AGCT 5 cut(s) 16, 27, 362, 488, 505
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 3 cut(s) 124, 137, 287
AoxI GGCC 1 cut(s) 667
ApeKI GCWGC 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 669
BamHI GGATCC 1 cut(s) 129
BarI GAAGNNNNNNTAC 2 cut(s) 308, 340
BbsI GAAGAC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 168, 694
BciT130I CCWGG 2 cut(s) 117, 251
BciVI GTATCC 2 cut(s) 186, 573
BcoDI GTCTC 1 cut(s) 509
BfmI CTRYAG 2 cut(s) 562, 731
BfuAI ACCTGC 1 cut(s) 635
BfuI GTATCC 2 cut(s) 186, 573
BglII AGATCT 1 cut(s) 535
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 2 cut(s) 117, 251
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 117, 251
BmsI GCATC 3 cut(s) 141, 366, 685
BpiI GAAGAC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 116, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 557, 720
BseBI CCWGG 2 cut(s) 117, 251
BseDI CCNNGG 2 cut(s) 116, 210
BseGI GGATG 4 cut(s) 127, 156, 676, 705
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 188, 510
BseNI ACTGG 2 cut(s) 557, 720
BseRI GAGGAG 4 cut(s) 467, 470, 473, 476
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 669
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 669
Bsp143I GATC 3 cut(s) 129, 292, 535
BspACI CCGC 1 cut(s) 674
BspANI GGCC 1 cut(s) 669
BspCNI CTCAG 2 cut(s) 189, 511
BspLI GGNNCC 1 cut(s) 131
BspMAI CTGCAG 1 cut(s) 566
BspMI ACCTGC 1 cut(s) 635
BspPI GGATC 3 cut(s) 124, 137, 287
BsrI ACTGG 2 cut(s) 557, 720
BssECI CCNNGG 2 cut(s) 116, 210
BssMI GATC 3 cut(s) 129, 292, 535
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 117, 251
Bst4CI ACNGT 1 cut(s) 585
BstC8I GCNNGC 2 cut(s) 25, 711
BstDEI CTNAG 2 cut(s) 197, 519
BstENI CCTNNNNNAGG 1 cut(s) 196
BstF5I GGATG 4 cut(s) 127, 156, 676, 705
BstKTI GATC 3 cut(s) 132, 295, 538
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 3 cut(s) 129, 292, 535
BstMWI GCNNNNNNNGC 3 cut(s) 90, 99, 641
BstNI CCWGG 2 cut(s) 117, 251
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 2 cut(s) 115, 249
BstSFI CTRYAG 2 cut(s) 562, 731
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 129, 535
BstYI RGATCY 2 cut(s) 129, 535
BsuI GTATCC 2 cut(s) 186, 573
BsuRI GGCC 1 cut(s) 669
BtsCI GGATG 4 cut(s) 127, 156, 676, 705
BtsIMutI CAGTG 1 cut(s) 713
BveI ACCTGC 1 cut(s) 635
Cac8I GCNNGC 2 cut(s) 25, 711
Cfr13I GGNCC 1 cut(s) 113
CsiI ACCWGGT 1 cut(s) 249
Csp6I GTAC 1 cut(s) 66
CviAII CATG 2 cut(s) 164, 710
CviJI RGCY 7 cut(s) 16, 27, 202, 362, 488, 505, 669
CviKI_1 RGCY 7 cut(s) 16, 27, 202, 362, 488, 505, 669
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 2 cut(s) 197, 519
DpnI GATC 3 cut(s) 131, 294, 537
DpnII GATC 3 cut(s) 129, 292, 535
DraI TTTAAA 2 cut(s) 282, 616
EaeI YGGCCR 1 cut(s) 667
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 201, 621
EcoNI CCTNNNNNAGG 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 115, 249
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 167, 713
FalI AAGNNNNNCTT 4 cut(s) 477, 509, 522, 554
FatI CATG 2 cut(s) 163, 709
FauI CCCGC 1 cut(s) 681
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 4 cut(s) 134, 163, 663, 712
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 669
Hin1II CATG 2 cut(s) 167, 713
HindIII AAGCTT 2 cut(s) 14, 486
HinfI GANTC 2 cut(s) 31, 567
HphI GGTGA 1 cut(s) 579
Hpy188I TCNGA 2 cut(s) 198, 373
Hpy188III TCNNGA 1 cut(s) 179
HpyAV CCTTC 4 cut(s) 91, 176, 524, 596
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 8 cut(s) 4, 154, 170, 379, 400, 564, 650, 713
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 99, 641
HpyF3I CTNAG 2 cut(s) 197, 519
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 167, 713
Kzo9I GATC 3 cut(s) 129, 292, 535
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 3 cut(s) 141, 366, 685
MabI ACCWGGT 1 cut(s) 249
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 585
MalI GATC 3 cut(s) 131, 294, 537
MboI GATC 3 cut(s) 129, 292, 535
MboII GAAGA 6 cut(s) 22, 55, 227, 328, 485, 494
MflI RGATCY 2 cut(s) 129, 535
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 7 cut(s) 223, 301, 351, 394, 409, 611, 720
MluNI TGGCCA 1 cut(s) 669
MmeI TCCRAC 2 cut(s) 672, 704
MnlI CCTC 9 cut(s) 45, 66, 130, 192, 445, 448, 451, 454, 466
Mox20I TGGCCA 1 cut(s) 669
Mph1103I ATGCAT 1 cut(s) 156
MroXI GAANNNNTTC 1 cut(s) 489
MscI TGGCCA 1 cut(s) 669
MseI TTAA 4 cut(s) 18, 206, 281, 615
Msp20I TGGCCA 1 cut(s) 669
MspR9I CCNGG 2 cut(s) 117, 251
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 2 cut(s) 117, 251
MwoI GCNNNNNNNGC 3 cut(s) 90, 99, 641
NdeII GATC 3 cut(s) 129, 292, 535
NlaIII CATG 2 cut(s) 167, 713
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 585
NsiI ATGCAT 1 cut(s) 156
NspI RCATGY 1 cut(s) 713
PaeI GCATGC 1 cut(s) 713
PaqCI CACCTGC 1 cut(s) 635
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 2 cut(s) 31, 567
PkrI GCNGC 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 115, 249
PspGI CCWGG 2 cut(s) 115, 249
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 566
PsuI RGATCY 2 cut(s) 129, 535
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SaqAI TTAA 4 cut(s) 18, 206, 281, 615
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 3 cut(s) 129, 292, 535
Sau96I GGNCC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 117, 251
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 3 cut(s) 141, 366, 685
SfcI CTRYAG 2 cut(s) 562, 731
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SphI GCATGC 1 cut(s) 713
Sse9I AATT 7 cut(s) 223, 301, 351, 394, 409, 611, 720
SsiI CCGC 1 cut(s) 674
SspI AATATT 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 115, 249
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 334, 507
TasI AATT 7 cut(s) 223, 301, 351, 394, 409, 611, 720
TfiI GAWTC 2 cut(s) 31, 567
Tru1I TTAA 4 cut(s) 18, 206, 281, 615
Tru9I TTAA 4 cut(s) 18, 206, 281, 615
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 1 cut(s) 585
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 585
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 720
VpaK11BI GGWCC 1 cut(s) 113
XagI CCTNNNNNAGG 1 cut(s) 196
XceI RCATGY 1 cut(s) 713
XmnI GAANNNNTTC 1 cut(s) 489
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.