Rmu_co8196328.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8196328.1
OG0000143
Physical Location & Seq
Forward (+)
85 .. 705
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8196328.1_g000001.1.cds

Sequence Viewer

Length: 542 bp
atgccttacatagaccaagtcaaggatgtatgtgatgatggtaactgtgggtttagagcggtcgctgatttagtaggattgggcgagaacgcatacttgcaagtgagaaatgacctactgactgaattgtcttcctattctgcacattatggtgagctatacggcagcgcagagaaggttcgtgacttggcacaatcactttcattcttcaatgagggtagagcgccatttgacagatgcatgacaatgcctgacatgggtcatctcatagcatcatgctataagattgtactcttccacttttcagctactaaatgtcttaccttcctacctcttcgatcaacacctgttcctttgccaatgcgtagacatattgctatcggtcttgttaatgattcccattatgttgaggtcttcttaaagccaggacatcctgtaccacccattgagtctaattggatcagatatcatacacaagctgcacaagggtgggatactatatatactgattctattgcacacttccagttgcttgcccgctc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
FAR1 MULE SET

Protein Analysis

181

Amino Acids

20.38

Weight (kDa)

6.03

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76710 AT1G76710 AT1G76710 AT1G76710
fragaria_vesca FvH4_1g20063 FvH4_2g15231 FvH4_3g04011 FvH4_3g28681 FvH4_4g01411 FvH4_4g10181 FvH4_4g15922 FvH4_4g16651 FvH4_4g16652 FvH4_5g13892 FvH4_5g13893 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g20623 FvH4_5g25511 FvH4_6g12551 FvH4_6g12552 FvH4_6g38841 FvH4_7g04391
malus_domestica MD05G1031300.v1.1 MD05G1031400.v1.1 MD05G1031500.v1.1 MD08G1164400.v1.1 MD10G1032900.v1.1 MD10G1033000.v1.1 MD10G1033100.v1.1
prunus_persica Prupe.3G240700_v2.0.a1 Prupe.7G144600_v2.0.a1 Prupe.8G038500_v2.0.a1 Prupe.8G038500_v2.0.a1
pyrus_communis pycom05g02250 pycom05g02260 pycom05g02270 pycom05g02280 pycom08g14160 pycom10g02100 pycom10g02110 pycom10g02130
rosa_chinensis RchiOBHm_Chr1g0329481 RchiOBHm_Chr1g0329491 RchiOBHm_Chr1g0341531 RchiOBHm_Chr3g0464811 RchiOBHm_Chr3g0494701 RchiOBHm_Chr3g0497501 RchiOBHm_Chr4g0385841 RchiOBHm_Chr5g0061181 RchiOBHm_Chr6g0263001 RchiOBHm_Chr7g0193111 RchiOBHm_Chr7g0206281 RchiOBHm_Chr7g0206311
rosa_laevigata RLG00000018908 RLG00000028528 RLG00000028803 RLG00000029882 RLG00000029883 RLG00000030361
rosa_multiflora Rmu_co8196328.1_g000001 Rmu_co8259135.1_g000001 Rmu_co8269185.1_g000001 Rmu_sc0000076.1_g000019 Rmu_sc0000311.1_g000007 Rmu_sc0000429.1_g000038 Rmu_sc0000429.1_g000039 Rmu_sc0000429.1_g000040 Rmu_sc0000511.1_g000005 Rmu_sc0000539.1_g000054 Rmu_sc0000566.1_g000039 Rmu_sc0000805.1_g000032 Rmu_sc0000870.1_g000073 Rmu_sc0000870.1_g000074 Rmu_sc0001010.1_g000018 Rmu_sc0001083.1_g000013 Rmu_sc0001114.1_g000011 Rmu_sc0001702.1_g000027 Rmu_sc0001779.1_g000012 Rmu_sc0002923.1_g000036 Rmu_sc0003242.1_g000011 Rmu_sc0003291.1_g000036 Rmu_sc0003393.1_g000012 Rmu_sc0003872.1_g000016 Rmu_sc0003872.1_g000017 Rmu_sc0003872.1_g000018 Rmu_sc0004084.1_g000020 Rmu_sc0004386.1_g000005 Rmu_sc0004622.1_g000005 Rmu_sc0004742.1_g000021 Rmu_sc0004755.1_g000020 Rmu_sc0004805.1_g000036 Rmu_sc0005065.1_g000006 Rmu_sc0005177.1_g000004 Rmu_sc0006373.1_g000003 Rmu_sc0006373.1_g000004 Rmu_sc0007121.1_g000002 Rmu_sc0007943.1_g000003 Rmu_sc0010368.1_g000006 Rmu_sc0010543.1_g000001 Rmu_sc0012591.1_g000006 Rmu_sc0013504.1_g000009 Rmu_sc0015025.1_g000001 Rmu_sc0016170.1_g000001 Rmu_sc0017156.1_g000001 Rmu_sc0026439.1_g000001
rosa_roxburghii Rroxscaffold_175G00432280 Rroxscaffold_1G00030190 Rroxscaffold_1G00030880 Rroxscaffold_2G00090520 Rroxscaffold_3G00227940 Rroxscaffold_3G00233400 Rroxscaffold_3G00238500 Rroxscaffold_3G00251650 Rroxscaffold_4G00301570 Rroxscaffold_4G00321040 Rroxscaffold_5G00350880 Rroxscaffold_7G00184400
rosa_rugosa Rorug01G0080800 Rorug01G0080900 Rorug01G0193900 Rorug02G0275900 Rorug02G0275900 Rorug02G0275900 Rorug02G0305400 Rorug02G0311800 Rorug02G0350400 Rorug02G0381300 Rorug03G0136700 Rorug03G0181900 Rorug03G0268000 Rorug04G0301600 Rorug05G0175100 Rorug05G0250700 Rorug05G0298200 Rorug05G0596000 Rorug06G0029500 Rorug07G0094300 Rorug07G0094300 Rorug07G0095400 Rorug07G0140100
rosa_samantha Rh1AG099200 Rh1AG190500 Rh1BG078900 Rh1BG079000 Rh1BG079100 Rh1CG084600 Rh1CG084700 Rh1CG095300 Rh1CG175900 Rh1DG103300 Rh1DG150400 Rh2AG079300 Rh2AG272400 Rh2AG464800 Rh2AG507400 Rh2DG078300 Rh2DG078400 Rh3CG206900 Rh3CG295400 Rh3DG206800 Rh3DG356200 Rh4CG071500 Rh4CG179200 Rh4DG064700 Rh5CG362400 Rh7AG212300 Rh7AG226200 Rh7BG222200
rosa_wichuraiana Rw0G009990 Rw0G011260 Rw0G011270 Rw0G012910 Rw0G013740 Rw1G007740 Rw1G013050 Rw1G014230 Rw2G014270 Rw3G012720 Rw3G028110 Rw4G006630 Rw4G015270 Rw4G016160 Rw4G031380 Rw5G011440 Rw5G029180 Rw5G048360 Rw5G048430 Rw5G048780 Rw6G005250 Rw6G006390 Rw7G002840 Rw7G014080 Rw7G019650 Rw7G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
AccBSI CCGCTC 2 cut(s) 59, 540
AccI GTMKAC 1 cut(s) 367
AciI CCGC 2 cut(s) 59, 538
AclWI GGATC 1 cut(s) 467
AfaI GTAC 2 cut(s) 291, 438
AfiI CCNNNNNNNGG 2 cut(s) 22, 257
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 424
AleI CACNNNNGTG 1 cut(s) 487
AluBI AGCT 3 cut(s) 157, 308, 479
AluI AGCT 3 cut(s) 157, 308, 479
AlwI GGATC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 165, 479
AspLEI GCGC 2 cut(s) 170, 226
AsuHPI GGTGA 1 cut(s) 164
BbsI GAAGAC 2 cut(s) 123, 406
BbvI GCAGC 2 cut(s) 177, 466
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 426
BciVI GTATCC 1 cut(s) 487
BfoI RGCGCY 1 cut(s) 227
BfuI GTATCC 1 cut(s) 487
BisI GCNGC 2 cut(s) 166, 480
BlsI GCNGC 2 cut(s) 167, 481
Bme1390I CCNGG 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 227, 281
BoxI GACNNNNGTC 1 cut(s) 258
BpiI GAAGAC 2 cut(s) 123, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 257
Bse1I ACTGG 1 cut(s) 526
BseBI CCWGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 31, 430
BseLI CCNNNNNNNGG 2 cut(s) 22, 257
BseNI ACTGG 1 cut(s) 526
BseXI GCAGC 2 cut(s) 177, 466
BsgI GTGCAG 2 cut(s) 126, 465
Bsh1285I CGRYCG 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 22, 257
Bsp143I GATC 2 cut(s) 338, 459
BspACI CCGC 2 cut(s) 59, 538
BspPI GGATC 1 cut(s) 467
BsrBI CCGCTC 2 cut(s) 59, 540
BsrI ACTGG 1 cut(s) 526
BssMI GATC 2 cut(s) 338, 459
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 2 cut(s) 299, 339
BstC8I GCNNGC 2 cut(s) 534, 538
BstF5I GGATG 2 cut(s) 31, 430
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 2 cut(s) 170, 226
BstKTI GATC 2 cut(s) 341, 462
BstMBI GATC 2 cut(s) 338, 459
BstMCI CGRYCG 1 cut(s) 63
BstNI CCWGG 1 cut(s) 426
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 177, 466
BstV2I GAAGAC 2 cut(s) 123, 406
BsuI GTATCC 1 cut(s) 487
BtsCI GGATG 2 cut(s) 31, 430
Cac8I GCNNGC 2 cut(s) 534, 538
CfoI GCGC 2 cut(s) 170, 226
Csp6I GTAC 2 cut(s) 290, 437
CviAII CATG 3 cut(s) 241, 256, 276
CviJI RGCY 4 cut(s) 157, 308, 424, 479
CviKI_1 RGCY 4 cut(s) 157, 308, 424, 479
CviQI GTAC 2 cut(s) 290, 437
DpnI GATC 2 cut(s) 340, 461
DpnII GATC 2 cut(s) 338, 459
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 299, 339
EarI CTCTTC 2 cut(s) 299, 339
Eco32I GATATC 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 424
EcoRV GATATC 1 cut(s) 467
EcoT22I ATGCAT 1 cut(s) 242
FaeI CATG 3 cut(s) 244, 259, 279
FatI CATG 3 cut(s) 240, 255, 275
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 166, 480
FokI GGATG 2 cut(s) 38, 417
Fsp4HI GCNGC 2 cut(s) 166, 480
GlaI GCGC 2 cut(s) 169, 225
GluI GCNGC 2 cut(s) 166, 480
HaeII RGCGCY 1 cut(s) 227
HhaI GCGC 2 cut(s) 170, 226
Hin1II CATG 3 cut(s) 244, 259, 279
Hin6I GCGC 2 cut(s) 168, 224
HinP1I GCGC 2 cut(s) 168, 224
HinfI GANTC 3 cut(s) 395, 449, 509
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 464
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 169, 334
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 5 cut(s) 100, 143, 240, 482, 518
Hsp92II CATG 3 cut(s) 244, 259, 279
HspAI GCGC 2 cut(s) 168, 224
Kzo9I GATC 2 cut(s) 338, 459
LpnPI CCDG 5 cut(s) 264, 360, 411, 438, 447
Lsp1109I GCAGC 2 cut(s) 177, 466
LweI GCATC 2 cut(s) 227, 281
MaeIII GTNAC 2 cut(s) 41, 182
MalI GATC 2 cut(s) 340, 461
MbiI CCGCTC 2 cut(s) 59, 540
MboI GATC 2 cut(s) 338, 459
MboII GAAGA 5 cut(s) 123, 199, 286, 326, 406
MluCI AATT 2 cut(s) 125, 454
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 3 cut(s) 208, 342, 403
Mph1103I ATGCAT 1 cut(s) 242
MseI TTAA 2 cut(s) 390, 419
MslI CAYNNNNRTG 3 cut(s) 150, 245, 487
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
NdeII GATC 2 cut(s) 338, 459
NlaIII CATG 3 cut(s) 244, 259, 279
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 487
PfeI GAWTC 2 cut(s) 395, 509
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 167, 481
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PshAI GACNNNNGTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 2 cut(s) 291, 438
RsaNI GTAC 2 cut(s) 290, 437
RseI CAYNNNNRTG 3 cut(s) 150, 245, 487
SaqAI TTAA 2 cut(s) 390, 419
SatI GCNGC 2 cut(s) 166, 480
Sau3AI GATC 2 cut(s) 338, 459
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 426
SetI ASST 9 cut(s) 117, 159, 180, 310, 326, 334, 349, 414, 481
SfaNI GCATC 2 cut(s) 227, 281
SmiMI CAYNNNNRTG 3 cut(s) 150, 245, 487
Sse9I AATT 2 cut(s) 125, 454
SsiI CCGC 2 cut(s) 59, 538
StyD4I CCNGG 1 cut(s) 424
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 337
TaqII GACCGA 1 cut(s) 371
TasI AATT 2 cut(s) 125, 454
TatI WGTACW 1 cut(s) 289
TfiI GAWTC 2 cut(s) 395, 509
Tru1I TTAA 2 cut(s) 390, 419
Tru9I TTAA 2 cut(s) 390, 419
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 165, 479
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 192
Tth111I GACNNNGTC 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.