Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Reverse (-)

201041 .. 209741

Gene Structure 8701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1003200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTGAGCCGTGGTGGCGGCTGCTCTCGTCTTACCCCTCACCTGCGACTTCGGGACTCCAACCTCCACCGGCTCAACCTCCACCTCCACCTCCACCTCCACCTCCACCATCCGCAGCTGGGCTTCGGCTTCGGCTTTGTCTTTATCTTCGGCTTAGGGTTTTACAACACCAGAATCGCCCACCTCCGCTGCTACCCCTGCCCTCCGCCTCTCAAACCCCTACCCTTGTCGTCTGCCCTCTCTCACTCTCACTCTCACTCTCACACAAGGGCGGTTCGTTTTTCGTCCATCCTTCCTTCTTCTAAGTCGTCTTCCCCCGACATTACCGCCCTCCCCCATTGTTTTAGCCAACGAGAAGATGAATGCGAGCTTCCCCCCGAAGGATTGTCCTCTGTTGCAGGAGGAATAGTCTCACTGGGAAAATTTGATGCCCTTCACATTGGTCATCGAGAACTTGCGGTTCAAGCATCCAAGGTTGGACCTCCGTTCCTTTTGTCATTTGTTGGAATGGCTGAAGTACTGGGTTGGAAACCAAGGGCTTCCATAGTTGCTAAATGTGATCGCAAGCGGGTTCTTTCCTCTTGGGCCTCGTACTGTGGTGACATGGCACCTGCAGAGTTTGAGATTGAATTTTCAAGTGTTCGACATCTAACACCAAGGCAATTTGTTGAGAAATTATTGAAAGAGCTTGGAGTGCGTGGGATTGTGGCAGGTGAAAACTACCGATTTGGATACAAAGCTGCGGGTGATGCGACAGAGCTGGTGAGGTTGTGTGAAGAGTATGGCATTGGGGCTTATATCATAAACCCTGTTATGGACAAGAATGAATGCTCCATAAATATACAGTGGAGTGATTTGAAAGACGGGACAAGTCTCGTCTACTCGTGTTCGCCATGCCCTTGCTGTGGGAGATATGAAGTATGTCTCACAACTCTTGGGTCGGCAGCATCGTCTGATAATGAATGCTTCGAAGGACCAGGAAGGATTTCCAGGCAGCAAACACAAGTTATCAGTTCCAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

342

Amino Acids

37.46

Weight (kDa)

8.47

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_syn	PF06574	134 - 276	2.1e-15	FAD synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	51, 619, 701
Acc36I	ACCTGC	3 cut(s)	51, 619, 701
AccB1I	GGYRCC	1 cut(s)	607
AccI	GTMKAC	1 cut(s)	879
AciI	CCGC	9 cut(s)	18, 113, 187, 206, 272, 327, 458, 568, 743
AcsI	RAATTY	2 cut(s)	422, 629
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	519, 593
AfiI	CCNNNNNNNGG	4 cut(s)	119, 380, 814, 905
AgsI	TTSAA	5 cut(s)	464, 629, 636, 682, 859
AjnI	CCWGG	2 cut(s)	976, 989
AluBI	AGCT	5 cut(s)	118, 370, 688, 740, 760
AluI	AGCT	5 cut(s)	118, 370, 688, 740, 760
Alw26I	GTCTC	3 cut(s)	415, 878, 929
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	6 cut(s)	21, 115, 189, 740, 944, 994
ApoI	RAATTY	2 cut(s)	422, 629
Asp700I	GAANNNNTTC	1 cut(s)	985
AspS9I	GGNCC	3 cut(s)	479, 585, 974
AsuHPI	GGTGA	5 cut(s)	32, 611, 725, 758, 775
AsuII	TTCGAA	1 cut(s)	969
AvaII	GGWCC	2 cut(s)	479, 974
BanI	GGYRCC	1 cut(s)	607
BauI	CACGAG	1 cut(s)	883
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	6 cut(s)	8, 127, 176, 727, 956, 1006
BccI	CCATC	2 cut(s)	117, 296
BciT130I	CCWGG	2 cut(s)	978, 991
BciVI	GTATCC	1 cut(s)	725
BcoDI	GTCTC	3 cut(s)	415, 878, 929
BfaI	CTAG	1 cut(s)	1024
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	3 cut(s)	51, 619, 701
BfuI	GTATCC	1 cut(s)	725
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	7 cut(s)	19, 22, 116, 190, 741, 945, 995
BlsI	GCNGC	7 cut(s)	20, 23, 117, 191, 742, 946, 996
BmcAI	AGTACT	1 cut(s)	519
Bme1390I	CCNGG	2 cut(s)	978, 991
Bme18I	GGWCC	2 cut(s)	479, 974
BmgT120I	GGNCC	3 cut(s)	479, 585, 974
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	2 cut(s)	978, 991
BmrI	ACTGGG	2 cut(s)	425, 530
BmsI	GCATC	4 cut(s)	418, 476, 739, 956
BmuI	ACTGGG	2 cut(s)	425, 530
BpiI	GAAGAC	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	154
Bpu14I	TTCGAA	1 cut(s)	969
BsaJI	CCNNGG	4 cut(s)	10, 471, 533, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 380, 814, 905
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	2 cut(s)	420, 525
BseBI	CCWGG	2 cut(s)	978, 991
BseDI	CCNNGG	4 cut(s)	10, 471, 533, 656
BseGI	GGATG	3 cut(s)	109, 288, 467
BseLI	CCNNNNNNNGG	4 cut(s)	119, 380, 814, 905
BseNI	ACTGG	2 cut(s)	420, 525
BseXI	GCAGC	6 cut(s)	8, 127, 176, 727, 956, 1006
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	2 cut(s)	68, 880
BslI	CCNNNNNNNGG	4 cut(s)	119, 380, 814, 905
BsmAI	GTCTC	3 cut(s)	415, 878, 929
BsmFI	GGGAC	2 cut(s)	68, 880
BsmI	GAATGC	3 cut(s)	368, 833, 968
BsnI	GGCC	1 cut(s)	587
Bsp119I	TTCGAA	1 cut(s)	969
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	9 cut(s)	18, 113, 187, 206, 272, 327, 458, 568, 743
BspANI	GGCC	1 cut(s)	587
BspLI	GGNNCC	1 cut(s)	609
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	3 cut(s)	51, 619, 701
BspT104I	TTCGAA	1 cut(s)	969
BspT107I	GGYRCC	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	420, 525
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	4 cut(s)	10, 471, 533, 656
BssMI	GATC	1 cut(s)	559
BssSI	CACGAG	1 cut(s)	883
BssT1I	CCWWGG	3 cut(s)	471, 533, 656
Bst2BI	CACGAG	1 cut(s)	883
Bst2UI	CCWGG	2 cut(s)	978, 991
Bst4CI	ACNGT	2 cut(s)	596, 846
Bst6I	CTCTTC	1 cut(s)	771
BstBI	TTCGAA	1 cut(s)	969
BstC8I	GCNNGC	2 cut(s)	368, 566
BstDEI	CTNAG	2 cut(s)	154, 303
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	109, 288, 467
BstKTI	GATC	1 cut(s)	562
BstMAI	GTCTC	3 cut(s)	415, 878, 929
BstMBI	GATC	1 cut(s)	559
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 198, 464, 694, 749
BstNI	CCWGG	2 cut(s)	978, 991
BstSCI	CCNGG	2 cut(s)	976, 989
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	6 cut(s)	8, 127, 176, 727, 956, 1006
BstV2I	GAAGAC	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	725
BsuRI	GGCC	1 cut(s)	587
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	109, 288, 467
BtsIMutI	CAGTG	2 cut(s)	413, 851
BveI	ACCTGC	3 cut(s)	51, 619, 701
Cac8I	GCNNGC	2 cut(s)	368, 566
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	3 cut(s)	479, 585, 974
Csp6I	GTAC	2 cut(s)	518, 592
CviAII	CATG	2 cut(s)	604, 894
CviQI	GTAC	2 cut(s)	518, 592
DdeI	CTNAG	2 cut(s)	154, 303
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
EciI	GGCGGA	1 cut(s)	195
Eco130I	CCWWGG	3 cut(s)	471, 533, 656
Eco47I	GGWCC	2 cut(s)	479, 974
Eco57I	CTGAAG	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	976, 989
EcoT14I	CCWWGG	3 cut(s)	471, 533, 656
ErhI	CCWWGG	3 cut(s)	471, 533, 656
FaeI	CATG	2 cut(s)	607, 897
FaqI	GGGAC	2 cut(s)	68, 880
FatI	CATG	2 cut(s)	603, 893
FauI	CCCGC	2 cut(s)	561, 736
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	7 cut(s)	19, 22, 116, 190, 741, 945, 995
FokI	GGATG	3 cut(s)	96, 275, 454
Fsp4HI	GCNGC	7 cut(s)	19, 22, 116, 190, 741, 945, 995
FspBI	CTAG	1 cut(s)	1024
GluI	GCNGC	7 cut(s)	19, 22, 116, 190, 741, 945, 995
GsaI	CCCAGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	1 cut(s)	70
Hin1II	CATG	2 cut(s)	607, 897
HinfI	GANTC	2 cut(s)	56, 174
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	5 cut(s)	32, 611, 725, 758, 775
Hpy166II	GTNNAC	1 cut(s)	880
Hpy188I	TCNGA	1 cut(s)	955
Hpy188III	TCNNGA	2 cut(s)	53, 449
Hpy8I	GTNNAC	1 cut(s)	880
HpyAV	CCTTC	6 cut(s)	302, 306, 374, 443, 965, 975
HpyCH4III	ACNGT	2 cut(s)	596, 846
HpyCH4V	TGCA	2 cut(s)	398, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 198, 464, 694, 749
HpyF3I	CTNAG	2 cut(s)	154, 303
Hsp92II	CATG	2 cut(s)	607, 897
Kzo9I	GATC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	836
Lsp1109I	GCAGC	6 cut(s)	8, 127, 176, 727, 956, 1006
LweI	GCATC	4 cut(s)	418, 476, 739, 956
MaeI	CTAG	1 cut(s)	1024
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MboII	GAAGA	5 cut(s)	139, 291, 303, 368, 788
MluCI	AATT	4 cut(s)	422, 629, 662, 674
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	4 cut(s)	84, 457, 484, 506
MroXI	GAANNNNTTC	1 cut(s)	985
MspA1I	CMGCKG	2 cut(s)	118, 189
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	978, 991
Mva1269I	GAATGC	3 cut(s)	368, 833, 968
MvaI	CCWGG	2 cut(s)	978, 991
MwoI	GCNNNNNNNGC	5 cut(s)	15, 198, 464, 694, 749
NdeII	GATC	1 cut(s)	559
NlaIII	CATG	2 cut(s)	607, 897
NlaIV	GGNNCC	1 cut(s)	609
NmuCI	GTSAC	1 cut(s)	599
NspV	TTCGAA	1 cut(s)	969
PaqCI	CACCTGC	3 cut(s)	51, 619, 701
PcsI	WCGNNNNNNNCGW	1 cut(s)	947
PctI	GAATGC	3 cut(s)	368, 833, 968
PdmI	GAANNNNTTC	1 cut(s)	985
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	7 cut(s)	20, 23, 117, 191, 742, 946, 996
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	976, 989
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	2 cut(s)	976, 989
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	3 cut(s)	479, 585, 974
PstI	CTGCAG	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	519, 593
RsaNI	GTAC	2 cut(s)	518, 592
SatI	GCNGC	7 cut(s)	19, 22, 116, 190, 741, 945, 995
Sau3AI	GATC	1 cut(s)	559
Sau96I	GGNCC	3 cut(s)	479, 585, 974
ScaI	AGTACT	1 cut(s)	519
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	978, 991
SfaNI	GCATC	4 cut(s)	418, 476, 739, 956
SfcI	CTRYAG	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	969
SinI	GGWCC	2 cut(s)	479, 974
Sse9I	AATT	4 cut(s)	422, 629, 662, 674
SsiI	CCGC	9 cut(s)	18, 113, 187, 206, 272, 327, 458, 568, 743
SspMI	CTAG	1 cut(s)	1024
StyD4I	CCNGG	2 cut(s)	976, 989
StyI	CCWWGG	3 cut(s)	471, 533, 656
TaaI	ACNGT	2 cut(s)	596, 846
TaqI	TCGA	3 cut(s)	448, 643, 969
TasI	AATT	4 cut(s)	422, 629, 662, 674
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	174
TscAI	CASTG	2 cut(s)	420, 851
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	6 cut(s)	21, 115, 189, 740, 944, 994
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	4 cut(s)	375, 840, 930, 975
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	2 cut(s)	420, 851
VpaK11BI	GGWCC	2 cut(s)	479, 974
XapI	RAATTY	2 cut(s)	422, 629
XmiI	GTMKAC	1 cut(s)	879
XmnI	GAANNNNTTC	1 cut(s)	985
XspI	CTAG	1 cut(s)	1024
ZrmI	AGTACT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.