RLG00000035583

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003257
Physical Location & Seq
Forward (+)
69014243 .. 69020537
6295 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035583

Sequence Viewer

Length: 711 bp
ATGAAGTTGGAGATGGACACCAAGGTGAAAGTGACGGTGGGAGGGAAATTGAAAAGCAAGAAGGTGGGGATTAGGGTTGCGTGTCAGCAAATCAGAGGGGTAGCACCGAAAGGTAAGTCTCCGTCGGTGGCTTCAGTTGCTGACTCCCATTGCAAGGTGAACATGACCGTGTGTAAGGATGGGTGTGACTACCGGACGGTGCAGGAGGTGGTGGATAAGGCGCCGGAGAATTTAGAAGTAGGGAAGAGTGGTGGTGGCTCTTGTGTCTCGAATCACCTACGGCTGCGAGACCGCGACCTCCGCCGCCGCCTCCAACCCCAACTTGGTTATGGGTTCACCTTTGGCTTTAGATTGGGTACTCGAATCGCTGGGCTACGAGTACGACGCTCTCTCAAATCCTTGTCTGCTCATAGAATCTCGTCCTTTCGCTCTATCATTCATTCCAAGTCTCCTCCCGACATTCCAACACTCTCCCACTGTTTCAGGTATGGTTCCAACATACAGCATCGGATTGTAGAAGATAAGTTGATGAGGCAGAAGGCTCAGCTCTTACTTGATAATACTGCTTCCTATTCCCTCCTGTGTTACCTCTTCGGAAAAGGTATGTGTGTCTTTACTGGCTGTGATTTCCGTCCATCTGTTCTTGGAATTGGGATTGGTAAAGCTTATGCCTTGGTTTCTAAGTATAGGGCCATTTTTGTTTTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

237

Amino Acids

26.14

Weight (kDa)

10.12

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 709
AccB1I GGYRCC 1 cut(s) 220
AccII CGCG 1 cut(s) 294
AciI CCGC 4 cut(s) 292, 301, 304, 307
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 2 cut(s) 358, 381
AfiI CCNNNNNNNGG 2 cut(s) 154, 323
AgsI TTSAA 1 cut(s) 52
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 2 cut(s) 547, 665
AluI AGCT 2 cut(s) 547, 665
Alw26I GTCTC 4 cut(s) 123, 271, 282, 453
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 1 cut(s) 690
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 1 cut(s) 229
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 690
AsuHPI GGTGA 4 cut(s) 37, 169, 266, 328
BanI GGYRCC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 270
BccI CCATC 3 cut(s) 7, 173, 643
BceAI ACGGC 1 cut(s) 296
BcoDI GTCTC 4 cut(s) 123, 271, 282, 453
BfoI RGCGCY 1 cut(s) 224
BisI GCNGC 3 cut(s) 284, 304, 307
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 3 cut(s) 285, 305, 308
BmgT120I GGNCC 1 cut(s) 690
BmiI GGNNCC 2 cut(s) 222, 493
BmsI GCATC 1 cut(s) 514
Bpu1102I GCTNAGC 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 21, 672
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 323
Bse1I ACTGG 1 cut(s) 622
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 21, 672
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 154, 323
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 1 cut(s) 441
BseXI GCAGC 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 368
BsgI GTGCAG 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 692
BshNI GGYRCC 1 cut(s) 220
BsiSI CCGG 2 cut(s) 193, 224
BslI CCNNNNNNNGG 2 cut(s) 154, 323
BsmAI GTCTC 4 cut(s) 123, 271, 282, 453
BsnI GGCC 1 cut(s) 692
Bso31I GGTCTC 1 cut(s) 282
Bsp1720I GCTNAGC 1 cut(s) 543
BspACI CCGC 4 cut(s) 292, 301, 304, 307
BspANI GGCC 1 cut(s) 692
BspCNI CTCAG 1 cut(s) 556
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 222, 493
BspT107I GGYRCC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 622
BssECI CCNNGG 2 cut(s) 21, 672
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 2 cut(s) 21, 672
Bst4CI ACNGT 4 cut(s) 37, 169, 199, 479
Bst6I CTCTTC 2 cut(s) 239, 596
BstACI GRCGYC 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 543, 681
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstMAI GTCTC 4 cut(s) 123, 271, 282, 453
BstMWI GCNNNNNNNGC 2 cut(s) 137, 300
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 692
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 475
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 690
CseI GACGC 1 cut(s) 393
Csp6I GTAC 2 cut(s) 357, 380
CviAII CATG 1 cut(s) 163
CviQI GTAC 2 cut(s) 357, 380
DdeI CTNAG 2 cut(s) 543, 681
DinI GGCGCC 1 cut(s) 222
Eam1104I CTCTTC 2 cut(s) 239, 596
EarI CTCTTC 2 cut(s) 239, 596
EciI GGCGGA 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 21, 672
Eco31I GGTCTC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 21, 672
EgeI GGCGCC 1 cut(s) 222
EheI GGCGCC 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 21, 672
FaeI CATG 1 cut(s) 166
FaiI YATR 9 cut(s) 164, 330, 411, 489, 500, 605, 669, 687, 709
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 284, 304, 307
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 3 cut(s) 284, 304, 307
GlaI GCGC 1 cut(s) 222
GluI GCNGC 3 cut(s) 284, 304, 307
GsaI CCCAGC 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 1 cut(s) 692
HapII CCGG 2 cut(s) 193, 224
HgaI GACGC 1 cut(s) 393
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 4 cut(s) 143, 271, 363, 414
HpaII CCGG 2 cut(s) 193, 224
HphI GGTGA 4 cut(s) 37, 169, 266, 328
Hpy166II GTNNAC 2 cut(s) 160, 336
Hpy188I TCNGA 3 cut(s) 95, 510, 596
Hpy188III TCNNGA 2 cut(s) 268, 455
Hpy8I GTNNAC 2 cut(s) 160, 336
Hpy99I CGWCG 2 cut(s) 127, 387
HpyAV CCTTC 2 cut(s) 55, 532
HpyCH4III ACNGT 4 cut(s) 37, 169, 199, 479
HpyCH4V TGCA 2 cut(s) 153, 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 300
HpyF3I CTNAG 2 cut(s) 543, 681
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 1 cut(s) 221
KasI GGCGCC 1 cut(s) 220
LpnPI CCDG 7 cut(s) 188, 206, 237, 354, 469, 593, 603
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 1 cut(s) 514
MaeIII GTNAC 3 cut(s) 31, 185, 584
MboII GAAGA 3 cut(s) 256, 530, 583
MluCI AATT 3 cut(s) 47, 229, 648
Mly113I GGCGCC 1 cut(s) 221
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 3 cut(s) 337, 488, 519
MnlI CCTC 9 cut(s) 35, 89, 199, 308, 320, 462, 525, 587, 599
MslI CAYNNNNRTG 2 cut(s) 23, 167
MspI CCGG 2 cut(s) 193, 224
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 137, 300
NarI GGCGCC 1 cut(s) 221
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 2 cut(s) 222, 493
NmuCI GTSAC 2 cut(s) 31, 185
OliI CACNNNNGTG 1 cut(s) 23
PfeI GAWTC 3 cut(s) 271, 363, 414
PkrI GCNGC 3 cut(s) 285, 305, 308
PleI GAGTC 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 137
PsiI TTATAA 1 cut(s) 709
PspFI CCCAGC 1 cut(s) 368
PspN4I GGNNCC 2 cut(s) 222, 493
PspPI GGNCC 1 cut(s) 690
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 2 cut(s) 358, 381
RsaNI GTAC 2 cut(s) 357, 380
RseI CAYNNNNRTG 2 cut(s) 23, 167
SatI GCNGC 3 cut(s) 284, 304, 307
Sau96I GGNCC 1 cut(s) 690
SchI GAGTC 1 cut(s) 137
SfaNI GCATC 1 cut(s) 514
SfoI GGCGCC 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 23, 167
Sse9I AATT 3 cut(s) 47, 229, 648
SsiI CCGC 4 cut(s) 292, 301, 304, 307
SspDI GGCGCC 1 cut(s) 220
StyI CCWWGG 2 cut(s) 21, 672
TaaI ACNGT 4 cut(s) 37, 169, 199, 479
TaqI TCGA 2 cut(s) 269, 361
TasI AATT 3 cut(s) 47, 229, 648
TauI GCSGC 2 cut(s) 306, 309
TfiI GAWTC 3 cut(s) 271, 363, 414
TscAI CASTG 1 cut(s) 482
TseFI GTSAC 2 cut(s) 31, 185
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 2 cut(s) 31, 185
TspDTI ATGAA 2 cut(s) 17, 428
TspGWI ACGGA 2 cut(s) 111, 620
TspRI CASTG 1 cut(s) 482
XapI RAATTY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 2 cut(s) 320, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.