Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Forward (+)

64536530 .. 64546029

Gene Structure 9500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG445400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTGGAGAATGAATATTTTGCTGGAGGAGGAATAGTTGCACTGGGAAAATTCGATGCCCTTCATATTGGTCATCGAGAGCTTGCCATTCAAGCCTCAAAGGTCGGACCTCCATTTCTTTTATCATTTGTTGGAATGGCAGAAGTACTGGGTTGGGAACCTAGGGCTCCAATAGTTGCCAAATGTGATCGAAAGCGGGTTCTTTCAACTTGGGCTCCATATTGTGGTAACATGGTCCCTGCAGAGTTTGAAATTCAATTTTCAAGTGTTCGACAACTCACTCCACGGGAATTTGTTGAAAAGTTATTGAAAGAGTTTGGAGTTCGTGGGGTTGTGGCGGGTGAAAACTACCGATTTGGATATAAAGCAGCTGGTGATGCGAGAGAGCTGGTGAAGTTGTGTGAAGAATACGGTATGGGGGCTTACATCATAAAATCTGTTATGGACAAGAACCAACACTCCATCAGCACGAACTCAGATTCAAAAGACAGAGGACAAGTTTCATCTACTCGTGTTCGCCGCGCCCTTGCTGTAGGAGATATGAAGTATGTATCTCAACTTTTGGGTCGCCAACACCGCATGATATTGATTGCAAAGGAGCAGGAAGGTTTCCGTTGGAGCAGACATAAATTGTCAGTTCCAAAGTCGTGTATGTTAAATTTAGGTCCAAAAGAGGGTCTATATGGGAAGTGTGATCTCTTAATTGGTGATGAAGGCGAGCTAGTAGTGCCATGTAGTGTAGTAATTGACACAGCATATATCCACATAGAAATGGATGAGGTAGGTGTAGGTATGTATGATGATATAGTTAGTAGTAAACAGGATGTGAGGCTCTTACGTATTGAATTTGGTGATTTGGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

288

Amino Acids

32.1

Weight (kDa)

6.61

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_syn	PF06574	11 - 157	2.8e-16	FAD synthetase
CTP_transf_like	PF01467	14 - 174	5.8e-06	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccII	CGCG	1 cut(s)	522
AciI	CCGC	4 cut(s)	196, 338, 520, 577
AcsI	RAATTY	5 cut(s)	50, 252, 290, 658, 845
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	224, 674
AgsI	TTSAA	9 cut(s)	92, 207, 251, 257, 264, 299, 310, 483, 845
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	4 cut(s)	82, 371, 388, 721
AluI	AGCT	4 cut(s)	82, 371, 388, 721
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	5 cut(s)	50, 252, 290, 658, 845
AspA2I	CCTAGG	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	3 cut(s)	107, 235, 665
AsuHPI	GGTGA	5 cut(s)	353, 386, 403, 719, 863
AvaII	GGWCC	3 cut(s)	107, 235, 665
AvrII	CCTAGG	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	169, 217
BauI	CACGAG	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	1 cut(s)	470
BfaI	CTAG	2 cut(s)	162, 722
BfmI	CTRYAG	2 cut(s)	240, 531
BisI	GCNGC	2 cut(s)	369, 520
BlnI	CCTAGG	1 cut(s)	161
BlsI	GCNGC	2 cut(s)	370, 521
BmcAI	AGTACT	1 cut(s)	147
Bme18I	GGWCC	3 cut(s)	107, 235, 665
BmgT120I	GGNCC	3 cut(s)	107, 235, 665
BmiI	GGNNCC	4 cut(s)	159, 168, 216, 237
BmrI	ACTGGG	2 cut(s)	53, 158
BmsI	GCATC	2 cut(s)	46, 367
BmuI	ACTGGG	2 cut(s)	53, 158
BpmI	CTGGAG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	161, 284
BsaXI	ACNNNNNCTCC	6 cut(s)	21, 51, 199, 229, 443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 674
Bse1I	ACTGG	2 cut(s)	48, 153
BseDI	CCNNGG	2 cut(s)	161, 284
BseGI	GGATG	2 cut(s)	781, 829
BseLI	CCNNNNNNNGG	2 cut(s)	224, 674
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	48, 153
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	224, 674
BsmFI	GGGAC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	169, 217
Bsp143I	GATC	2 cut(s)	187, 694
BspACI	CCGC	4 cut(s)	196, 338, 520, 577
BspCNI	CTCAG	1 cut(s)	488
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	4 cut(s)	159, 168, 216, 237
BspMAI	CTGCAG	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	48, 153
BssECI	CCNNGG	2 cut(s)	161, 284
BssMI	GATC	2 cut(s)	187, 694
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	839
BstC8I	GCNNGC	2 cut(s)	84, 719
BstDEI	CTNAG	2 cut(s)	475, 864
BstDSI	CCRYGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	781, 829
BstFNI	CGCG	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	2 cut(s)	190, 697
BstMBI	GATC	2 cut(s)	187, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 377, 576, 727
BstSFI	CTRYAG	2 cut(s)	240, 531
BstSNI	TACGTA	1 cut(s)	839
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	781, 829
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	84, 719
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	3 cut(s)	107, 235, 665
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	3 cut(s)	232, 580, 732
CviJI	RGCY	9 cut(s)	82, 95, 167, 215, 371, 388, 422, 721, 832
CviKI_1	RGCY	9 cut(s)	82, 95, 167, 215, 371, 388, 422, 721, 832
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	475, 864
DpnI	GATC	2 cut(s)	189, 696
DpnII	GATC	2 cut(s)	187, 694
Eco105I	TACGTA	1 cut(s)	839
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	2 cut(s)	169, 217
Eco47I	GGWCC	3 cut(s)	107, 235, 665
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	2 cut(s)	169, 217
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	3 cut(s)	235, 583, 735
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	231, 579, 731
FauI	CCCGC	2 cut(s)	189, 331
Fnu4HI	GCNGC	2 cut(s)	369, 520
FokI	GGATG	2 cut(s)	788, 836
FriOI	GRGCYC	2 cut(s)	169, 217
Fsp4HI	GCNGC	2 cut(s)	369, 520
FspBI	CTAG	2 cut(s)	162, 722
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	2 cut(s)	369, 520
GsuI	CTGGAG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	3 cut(s)	235, 583, 735
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HinfI	GANTC	2 cut(s)	479, 860
HphI	GGTGA	5 cut(s)	353, 386, 403, 719, 863
Hpy166II	GTNNAC	1 cut(s)	818
Hpy188I	TCNGA	2 cut(s)	107, 478
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	818
HpyAV	CCTTC	3 cut(s)	71, 599, 707
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	1 cut(s)	838
HpyCH4V	TGCA	3 cut(s)	41, 242, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 377, 576, 727
HpyF3I	CTNAG	2 cut(s)	475, 864
HpySE526I	ACGT	1 cut(s)	838
Hsp92II	CATG	3 cut(s)	235, 583, 735
HspAI	GCGC	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	187, 694
LmnI	GCTCC	4 cut(s)	172, 220, 598, 618
LpnPI	CCDG	8 cut(s)	9, 29, 134, 252, 357, 374, 587, 806
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	2 cut(s)	46, 367
MaeI	CTAG	2 cut(s)	162, 722
MaeII	ACGT	1 cut(s)	838
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	189, 696
MboI	GATC	2 cut(s)	187, 694
MboII	GAAGA	1 cut(s)	416
MhlI	GDGCHC	2 cut(s)	169, 217
MluCI	AATT	9 cut(s)	50, 252, 257, 290, 629, 658, 702, 744, 845
MmeI	TCCRAC	3 cut(s)	85, 112, 596
MnlI	CCTC	8 cut(s)	20, 23, 106, 120, 485, 667, 772, 822
MseI	TTAA	2 cut(s)	656, 701
MslI	CAYNNNNRTG	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	4 cut(s)	92, 377, 576, 727
NdeII	GATC	2 cut(s)	187, 694
NlaIII	CATG	3 cut(s)	235, 583, 735
NlaIV	GGNNCC	4 cut(s)	159, 168, 216, 237
PfeI	GAWTC	2 cut(s)	479, 860
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	370, 521
Ppu21I	YACGTR	1 cut(s)	839
PspN4I	GGNNCC	4 cut(s)	159, 168, 216, 237
PspPI	GGNCC	3 cut(s)	107, 235, 665
PstI	CTGCAG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	770
SaqAI	TTAA	2 cut(s)	656, 701
SatI	GCNGC	2 cut(s)	369, 520
Sau3AI	GATC	2 cut(s)	187, 694
Sau96I	GGNCC	3 cut(s)	107, 235, 665
ScaI	AGTACT	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	169, 217
SfaNI	GCATC	2 cut(s)	46, 367
SfcI	CTRYAG	2 cut(s)	240, 531
SinI	GGWCC	3 cut(s)	107, 235, 665
SmiMI	CAYNNNNRTG	1 cut(s)	770
SnaBI	TACGTA	1 cut(s)	839
Sse9I	AATT	9 cut(s)	50, 252, 257, 290, 629, 658, 702, 744, 845
SsiI	CCGC	4 cut(s)	196, 338, 520, 577
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	2 cut(s)	162, 722
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	1 cut(s)	841
TaqI	TCGA	4 cut(s)	54, 76, 190, 271
TasI	AATT	9 cut(s)	50, 252, 257, 290, 629, 658, 702, 744, 845
TatI	WGTACW	1 cut(s)	145
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	2 cut(s)	479, 860
Tru1I	TTAA	2 cut(s)	656, 701
Tru9I	TTAA	2 cut(s)	656, 701
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	5 cut(s)	27, 53, 492, 557, 726
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	224
VpaK11BI	GGWCC	3 cut(s)	107, 235, 665
XapI	RAATTY	5 cut(s)	50, 252, 290, 658, 845
XmaJI	CCTAGG	1 cut(s)	161
XspI	CTAG	2 cut(s)	162, 722
ZrmI	AGTACT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.