Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Reverse (-)

100995 .. 103381

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00180.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTTGAGTGGTGGTGGTGGCTGCTCTCGTCTTTCTACTCGACTTCGAGACTCCAACGTCAACCGGCTCCACCTCAACCTCCACCCCCCGCAGCTAGGCTTCGGCTTTATCTTTGTCTTGGGCTTAGGGTCTTACAACACCAGAATCGCCCACCGCCGCCGCTGCCCCTGCCCTCCACCTCTCAAACCCCTATCCTTGTCGTCTGCCCTCCCTCACTCTCACGCTCACTCTCACACACAGAGTCACACAAGGGGGTTTCCTTTTTCCTCCATCCTTCCTTGTTCTAAGTTGTCCTCCTCCAACATTACCGCCCTCTCCCATTGTTTTAGCCAACGAGAAGATGAACGCGAGCTTCCCCCCGAAGGATTGTCCTCTGTCGCAGGAGGAATAGTCGCACTGGGAAAATTCGATGCCCTTCACATTGGTCATCGAGAACTTGCGATTCAAGCATCCAAAGTTGGACCTCCGTTCCTTTTGTCATTTGTTGGAATGGCTGAAGTACTGGGTTGGGAACCAAGAGCTCCCATAGTTGCGAAATGTGATCGCAAACGGGTTCTTTCCTCTTGGGCCCCGTACTGTGGTGACATGGCACCTGCAGAGTTTCAGATTGAATTTTCAAGTGTTCGACGTCTAACACCAAGGCAATTTGTTGAGAAATTAGTGAAAGAGCTTGGAGTGCGTGGGGTTGTCGCAGGTGAAAACTACCGATTTGGATACAAAGCTGCGGGTGATGCGACAGAGCTGGTGAGGTTGTGTGAAGAGTATGGCATTGAGGCATATATCATAAATTCTGTTATGGACAAGAACGAATACTCCATAAATATACAGTCGAGTGATTTGAAAGACAGAGGACAAGTCTCCTCTACTCGCGTTCGCCGTGCCCTTGCTGTGGGAGATATGAAGTATGTCTCACAACTGTTGGGTCGGCAGCATCGTCTGATAATGAGTACTGCAAAGGACCAGGAAGGATTTGCTGGCAGCAAACACAAGTTGTCAGTTCCAAAGTCTGCTTTGTTAAATCTGGCTCCAAAGGAGGGTCTATACGAGAAGTGTTATCTTTGTAGTGGGGAGGATGATGACCTAGCATCATCCTGCAGGGTGGTGGTTGACACGGGGTACGTCCATATAGAAATGGATGATGAGGTAGACGTAGGCGTATGTAATAGAGTTGGTACACAGGACTTGAGGCTCTTACGTATTGAATTTGGTGATTCGCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

408

Amino Acids

44.74

Weight (kDa)

8.54

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	601, 683
AasI	GACNNNNNNGTC	1 cut(s)	56
AatII	GACGTC	1 cut(s)	631
Acc36I	ACCTGC	2 cut(s)	601, 683
AccB1I	GGYRCC	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	1146
AccII	CGCG	2 cut(s)	348, 870
AciI	CCGC	6 cut(s)	89, 154, 157, 160, 309, 725
AcsI	RAATTY	4 cut(s)	404, 611, 787, 1202
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	628
AfaI	GTAC	5 cut(s)	501, 575, 949, 1118, 1174
AfiI	CCNNNNNNNGG	5 cut(s)	95, 362, 578, 889, 1034
AgsI	TTSAA	5 cut(s)	446, 611, 618, 841, 1202
AjnI	CCWGG	1 cut(s)	960
AloI	GAACNNNNNNTCC	2 cut(s)	797, 829
AluBI	AGCT	6 cut(s)	94, 352, 521, 670, 722, 742
AluI	AGCT	6 cut(s)	94, 352, 521, 670, 722, 742
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	3 cut(s)	42, 862, 913
AoxI	GGCC	1 cut(s)	567
ApaI	GGGCCC	1 cut(s)	571
ApeKI	GCWGC	6 cut(s)	21, 91, 162, 722, 928, 978
ApoI	RAATTY	4 cut(s)	404, 611, 787, 1202
AspS9I	GGNCC	4 cut(s)	461, 567, 568, 958
AsuHPI	GGTGA	5 cut(s)	593, 707, 740, 757, 1220
AvaII	GGWCC	2 cut(s)	461, 958
BaeGI	GKGCMC	2 cut(s)	571, 883
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	2 cut(s)	523, 571
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	6 cut(s)	8, 103, 149, 709, 940, 990
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	861
BciT130I	CCWGG	1 cut(s)	962
BciVI	GTATCC	1 cut(s)	707
BcoDI	GTCTC	3 cut(s)	42, 862, 913
BfaI	CTAG	2 cut(s)	95, 1082
BfmI	CTRYAG	2 cut(s)	594, 1093
BfuAI	ACCTGC	2 cut(s)	601, 683
BfuI	GTATCC	1 cut(s)	707
BisI	GCNGC	8 cut(s)	22, 92, 157, 160, 163, 723, 929, 979
BlsI	GCNGC	8 cut(s)	23, 93, 158, 161, 164, 724, 930, 980
BmcAI	AGTACT	2 cut(s)	501, 949
Bme1390I	CCNGG	1 cut(s)	962
Bme18I	GGWCC	2 cut(s)	461, 958
BmgT120I	GGNCC	4 cut(s)	461, 567, 568, 958
BmiI	GGNNCC	6 cut(s)	68, 513, 569, 570, 591, 1026
BmrFI	CCNGG	1 cut(s)	962
BmrI	ACTGGG	2 cut(s)	407, 512
BmsI	GCATC	5 cut(s)	400, 458, 721, 940, 1094
BmuI	ACTGGG	2 cut(s)	407, 512
Bpu10I	CCTNAGC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	1204
BsaAI	YACGTR	1 cut(s)	1196
BsaHI	GRCGYC	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	638
BsaXI	ACNNNNNCTCC	4 cut(s)	375, 405, 797, 827
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 362, 578, 889, 1034
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	402, 507
BseBI	CCWGG	1 cut(s)	962
BseDI	CCNNGG	1 cut(s)	638
BseGI	GGATG	5 cut(s)	270, 449, 1078, 1088, 1141
BseLI	CCNNNNNNNGG	5 cut(s)	95, 362, 578, 889, 1034
BseNI	ACTGG	2 cut(s)	402, 507
BseRI	GAGGAG	2 cut(s)	286, 850
BseSI	GKGCMC	2 cut(s)	571, 883
BseXI	GCAGC	6 cut(s)	8, 103, 149, 709, 940, 990
Bsh1236I	CGCG	2 cut(s)	348, 870
BshFI	GGCC	1 cut(s)	569
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	1 cut(s)	64
BslI	CCNNNNNNNGG	5 cut(s)	95, 362, 578, 889, 1034
BsmAI	GTCTC	3 cut(s)	42, 862, 913
BsnI	GGCC	1 cut(s)	569
Bsp120I	GGGCCC	1 cut(s)	567
Bsp1286I	GDGCHC	3 cut(s)	523, 571, 883
Bsp143I	GATC	1 cut(s)	541
BspACI	CCGC	6 cut(s)	89, 154, 157, 160, 309, 725
BspANI	GGCC	1 cut(s)	569
BspFNI	CGCG	2 cut(s)	348, 870
BspLI	GGNNCC	6 cut(s)	68, 513, 569, 570, 591, 1026
BspMAI	CTGCAG	2 cut(s)	598, 1097
BspMI	ACCTGC	2 cut(s)	601, 683
BspT107I	GGYRCC	1 cut(s)	589
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	402, 507
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	638
BssMI	GATC	1 cut(s)	541
BssNI	GRCGYC	1 cut(s)	628
BssT1I	CCWWGG	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	962
Bst4CI	ACNGT	3 cut(s)	578, 828, 918
Bst6I	CTCTTC	1 cut(s)	753
BstACI	GRCGYC	1 cut(s)	628
BstBAI	YACGTR	1 cut(s)	1196
BstC8I	GCNNGC	2 cut(s)	350, 976
BstDEI	CTNAG	2 cut(s)	124, 285
BstF5I	GGATG	5 cut(s)	270, 449, 1078, 1088, 1141
BstFNI	CGCG	2 cut(s)	348, 870
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	3 cut(s)	42, 862, 913
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	5 cut(s)	162, 168, 446, 676, 731
BstNI	CCWGG	1 cut(s)	962
BstSCI	CCNGG	1 cut(s)	960
BstSFI	CTRYAG	2 cut(s)	594, 1093
BstSLI	GKGCMC	2 cut(s)	571, 883
BstSNI	TACGTA	1 cut(s)	1196
BstUI	CGCG	2 cut(s)	348, 870
BstV1I	GCAGC	6 cut(s)	8, 103, 149, 709, 940, 990
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	1 cut(s)	569
BtsCI	GGATG	5 cut(s)	270, 449, 1078, 1088, 1141
BtsIMutI	CAGTG	1 cut(s)	395
BveI	ACCTGC	2 cut(s)	601, 683
Cac8I	GCNNGC	2 cut(s)	350, 976
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	4 cut(s)	461, 567, 568, 958
Csp6I	GTAC	5 cut(s)	500, 574, 948, 1117, 1173
CviAII	CATG	1 cut(s)	586
CviQI	GTAC	5 cut(s)	500, 574, 948, 1117, 1173
DdeI	CTNAG	2 cut(s)	124, 285
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	521
Eco105I	TACGTA	1 cut(s)	1196
Eco130I	CCWWGG	1 cut(s)	638
Eco24I	GRGCYC	2 cut(s)	523, 571
Eco47I	GGWCC	2 cut(s)	461, 958
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	960
EcoT14I	CCWWGG	1 cut(s)	638
EcoT38I	GRGCYC	2 cut(s)	523, 571
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	1 cut(s)	589
FatI	CATG	1 cut(s)	585
FauI	CCCGC	2 cut(s)	96, 718
FblI	GTMKAC	1 cut(s)	1146
Fnu4HI	GCNGC	8 cut(s)	22, 92, 157, 160, 163, 723, 929, 979
FokI	GGATG	5 cut(s)	257, 436, 1075, 1085, 1148
FriOI	GRGCYC	2 cut(s)	523, 571
Fsp4HI	GCNGC	8 cut(s)	22, 92, 157, 160, 163, 723, 929, 979
FspBI	CTAG	2 cut(s)	95, 1082
GluI	GCNGC	8 cut(s)	22, 92, 157, 160, 163, 723, 929, 979
HaeIII	GGCC	1 cut(s)	569
HapII	CCGG	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	628
Hin1II	CATG	1 cut(s)	589
HincII	GTYRAC	2 cut(s)	61, 1108
HindII	GTYRAC	2 cut(s)	61, 1108
HinfI	GANTC	5 cut(s)	50, 144, 241, 442, 1211
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	5 cut(s)	593, 707, 740, 757, 1220
Hpy166II	GTNNAC	4 cut(s)	61, 1108, 1147, 1175
Hpy188I	TCNGA	2 cut(s)	606, 939
Hpy188III	TCNNGA	3 cut(s)	47, 431, 1221
Hpy8I	GTNNAC	4 cut(s)	61, 1108, 1147, 1175
Hpy99I	CGWCG	1 cut(s)	630
HpyAV	CCTTC	4 cut(s)	284, 356, 425, 959
HpyCH4III	ACNGT	3 cut(s)	578, 828, 918
HpyCH4IV	ACGT	5 cut(s)	57, 628, 1119, 1149, 1195
HpyCH4V	TGCA	3 cut(s)	596, 953, 1095
HpyF10VI	GCNNNNNNNGC	5 cut(s)	162, 168, 446, 676, 731
HpyF3I	CTNAG	2 cut(s)	124, 285
HpySE526I	ACGT	5 cut(s)	57, 628, 1119, 1149, 1195
Hsp92I	GRCGYC	1 cut(s)	628
Hsp92II	CATG	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	3 cut(s)	72, 526, 1030
Lsp1109I	GCAGC	6 cut(s)	8, 103, 149, 709, 940, 990
LweI	GCATC	5 cut(s)	400, 458, 721, 940, 1094
MaeI	CTAG	2 cut(s)	95, 1082
MaeII	ACGT	5 cut(s)	57, 628, 1119, 1149, 1195
MaeIII	GTNAC	2 cut(s)	242, 581
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	2 cut(s)	350, 770
MhlI	GDGCHC	3 cut(s)	523, 571, 883
MluCI	AATT	6 cut(s)	404, 611, 644, 656, 787, 1202
MlyI	GAGTC	2 cut(s)	44, 250
MmeI	TCCRAC	4 cut(s)	78, 324, 439, 466
MseI	TTAA	1 cut(s)	1016
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	962
MvaI	CCWGG	1 cut(s)	962
MvnI	CGCG	2 cut(s)	348, 870
MwoI	GCNNNNNNNGC	5 cut(s)	162, 168, 446, 676, 731
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	1 cut(s)	589
NlaIV	GGNNCC	6 cut(s)	68, 513, 569, 570, 591, 1026
NmuCI	GTSAC	2 cut(s)	242, 581
PaqCI	CACCTGC	2 cut(s)	601, 683
PcsI	WCGNNNNNNNCGW	2 cut(s)	874, 931
PfeI	GAWTC	3 cut(s)	144, 442, 1211
PkrI	GCNGC	8 cut(s)	23, 93, 158, 161, 164, 724, 930, 980
PleI	GAGTC	2 cut(s)	44, 249
PpsI	GAGTC	2 cut(s)	44, 249
Ppu21I	YACGTR	1 cut(s)	1196
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	960
PspGI	CCWGG	1 cut(s)	960
PspN4I	GGNNCC	6 cut(s)	68, 513, 569, 570, 591, 1026
PspOMI	GGGCCC	1 cut(s)	567
PspPI	GGNCC	4 cut(s)	461, 567, 568, 958
PstI	CTGCAG	2 cut(s)	598, 1097
RsaI	GTAC	5 cut(s)	501, 575, 949, 1118, 1174
RsaNI	GTAC	5 cut(s)	500, 574, 948, 1117, 1173
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	1 cut(s)	1016
SatI	GCNGC	8 cut(s)	22, 92, 157, 160, 163, 723, 929, 979
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	4 cut(s)	461, 567, 568, 958
SbfI	CCTGCAGG	1 cut(s)	1097
ScaI	AGTACT	2 cut(s)	501, 949
SchI	GAGTC	2 cut(s)	44, 250
ScrFI	CCNGG	1 cut(s)	962
SdaI	CCTGCAGG	1 cut(s)	1097
SduI	GDGCHC	3 cut(s)	523, 571, 883
SfaNI	GCATC	5 cut(s)	400, 458, 721, 940, 1094
SfcI	CTRYAG	2 cut(s)	594, 1093
SinI	GGWCC	2 cut(s)	461, 958
SmlI	CTYRAG	1 cut(s)	1183
SmoI	CTYRAG	1 cut(s)	1183
SnaBI	TACGTA	1 cut(s)	1196
Sse8387I	CCTGCAGG	1 cut(s)	1097
Sse9I	AATT	6 cut(s)	404, 611, 644, 656, 787, 1202
SsiI	CCGC	6 cut(s)	89, 154, 157, 160, 309, 725
SspMI	CTAG	2 cut(s)	95, 1082
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	1 cut(s)	960
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	3 cut(s)	578, 828, 918
TaiI	ACGT	5 cut(s)	60, 631, 1122, 1152, 1198
TaqI	TCGA	6 cut(s)	40, 46, 408, 430, 625, 830
TasI	AATT	6 cut(s)	404, 611, 644, 656, 787, 1202
TatI	WGTACW	2 cut(s)	499, 947
TauI	GCSGC	2 cut(s)	159, 162
TfiI	GAWTC	3 cut(s)	144, 442, 1211
Tru1I	TTAA	1 cut(s)	1016
Tru9I	TTAA	1 cut(s)	1016
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	2 cut(s)	242, 581
TseI	GCWGC	6 cut(s)	21, 91, 162, 722, 928, 978
Tsp45I	GTSAC	2 cut(s)	242, 581
TspDTI	ATGAA	2 cut(s)	357, 914
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	2 cut(s)	461, 958
XapI	RAATTY	4 cut(s)	404, 611, 787, 1202
XmiI	GTMKAC	1 cut(s)	1146
XspI	CTAG	2 cut(s)	95, 1082
ZraI	GACGTC	1 cut(s)	629
ZrmI	AGTACT	2 cut(s)	501, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.