Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8227451.1

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 750

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8227451.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 407 bp

ggctccaatagttgccaaatgtgatcgaaagcgggttctttcaacttgggctccatattgtggtaacatggtccctgcagagtttgaaattcaattttcaagtgttcgacaactcactccacgggaatttgttgaaaagttattgaaagagtttggagttcgtggggttgtggcgggtgaaaactaccgatttggatataaagcagctggtgatgcgagagagctggtgaagttgtgtgaagaatacggtatgggggcttacatcataaaatctgttatggacaagaaccaacactccatcagcacgaactcagattcaaaagacagaggacaagtttcatctactcgtgttcgccgcgcccttgctgtaggagatatgaagtatgtatctcaacttttgggtcgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

135

Amino Acids

15.13

Weight (kDa)

9.48

Isoelectric Point (pI)

17.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	60
AccII	CGCG	1 cut(s)	358
AciI	CCGC	3 cut(s)	32, 174, 356
AcsI	RAATTY	2 cut(s)	88, 126
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	7 cut(s)	43, 87, 93, 100, 135, 146, 319
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AluBI	AGCT	2 cut(s)	207, 224
AluI	AGCT	2 cut(s)	207, 224
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	2 cut(s)	88, 126
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	3 cut(s)	189, 222, 239
AvaII	GGWCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	306
BfmI	CTRYAG	2 cut(s)	76, 367
BisI	GCNGC	2 cut(s)	205, 356
BlsI	GCNGC	2 cut(s)	206, 357
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	3 cut(s)	4, 52, 73
BmsI	GCATC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	3 cut(s)	32, 174, 356
BspCNI	CTCAG	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	4, 52, 73
BspMAI	CTGCAG	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	23
BssSI	CACGAG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstSFI	CTRYAG	2 cut(s)	76, 367
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	5 cut(s)	3, 51, 207, 224, 258
CviKI_1	RGCY	5 cut(s)	3, 51, 207, 224, 258
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	1 cut(s)	71
FaiI	YATR	8 cut(s)	56, 69, 199, 252, 267, 279, 378, 385
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	1 cut(s)	67
FauI	CCCGC	2 cut(s)	25, 167
Fnu4HI	GCNGC	2 cut(s)	205, 356
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	205, 356
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	2 cut(s)	205, 356
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HinfI	GANTC	1 cut(s)	315
HphI	GGTGA	3 cut(s)	189, 222, 239
Hpy188I	TCNGA	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	311
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	8, 56
LpnPI	CCDG	3 cut(s)	88, 193, 210
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	3 cut(s)	88, 93, 126
MnlI	CCTC	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	3 cut(s)	4, 52, 73
PfeI	GAWTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	206, 357
PspN4I	GGNNCC	3 cut(s)	4, 52, 73
PspPI	GGNCC	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	207
SatI	GCNGC	2 cut(s)	205, 356
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	2 cut(s)	209, 226
SfaNI	GCATC	1 cut(s)	203
SfcI	CTRYAG	2 cut(s)	76, 367
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	88, 93, 126
SsiI	CCGC	3 cut(s)	32, 174, 356
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	26, 107
TasI	AATT	3 cut(s)	88, 93, 126
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	315
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	2 cut(s)	328, 393
Van91I	CCANNNNNTGG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	2 cut(s)	88, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.