Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Forward (+)

66897232 .. 66900705

Gene Structure 3474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41442

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTTGAGTGGTGGTGGCTCTCGTCTCTCGAATCACCTACGTCAGCGAGACTGCGACCTCCGCCACCGCCACCACCACCAACCCCAACTTGGTTTTGGGTTCGTCTTTGGCTTTGGATTGGGTACTCGAATCGCTGGGCTACGAGTACGACGCTCTCTCAAACCCTTGTCTGCTCGTAGAATCTCGTCTTTACGCTCTATCATTCATTCCAAGTCTCCCCCCGACATTCCTACACTCTCCCACTGTTTCAGCCAACAAGAAGACGACCGCGAGCTTCCCTCCGACGTATTGTCCTCAGTCGCAGGAGGAATAGTTGCACTGGGAAAATTCGATGCCCTTCATATTGGTCATCGAGAGCTTGCCATTCAAGCCTCAAAGGTCGGACCTCCATTTCTTTTATCATTTGTTGGAATGGCAGAAGTACTGGGTTGGGAACCTAGGGCTCCAATAGTTGCCAAATGTGATCGAAAGCGGGTTCTTTCAACTTGGGCTCCATATTGTGGTAACATGGTCCCTGCAGAGTTTGAAATTCAATTTTCAAGTGTTCGACAACTCACTCCACGGGAATTTGTTGAAAAGTTATTGAAAGAGTTTGGAGTTCGTGGGGTTGTGGCGGGTGAAAACTACCGATTTGGATATAAAGCAGCTGGTGATGCGAGAGAGCTGGTGAAGTTGTGTGAAGAATACGGTATGGGGGCTTACATCATAAAATCTGTTATGGACAAGAACCAACACTCCATCAGCACGAACTCAGATTCAAAAGACAGAGGACAAGTTTCATCTACTCGTGTTCGCCGCGCCCTTGCTGTAGGAGATATGAAGTATGTATCTCAACTTTTGGGTCGCCAACACCGCATGATATTGATTGCAAAGGAGCAGGAAGGTTTCCGTTGGAGCAGACATAAATTGTCAGTTCCAAAGTCGTGTATGTTAAATTTAGGTCCAAAAGAGGGTCTATATGGGAAGTGTGATCTCTTAATTGGTGATGAAGGCGAGCTAGTAGTGCCATGTAGTGTAGTAATTGACACAGCATATATCCACATAGAAATGGATGAGGTAGGTGTAGGTATGTATGATGATATAGTTAGTAGTAAACAGGATGTGAGGCTCTTACGTATTGAATTTGGTGATTTGGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

380

Amino Acids

42.32

Weight (kDa)

9.03

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_syn	PF06574	102 - 249	4.5e-16	FAD synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccII	CGCG	2 cut(s)	270, 798
AciI	CCGC	7 cut(s)	61, 67, 268, 472, 614, 796, 853
AcsI	RAATTY	5 cut(s)	326, 528, 566, 934, 1121
AfaI	GTAC	3 cut(s)	124, 147, 423
AfiI	CCNNNNNNNGG	3 cut(s)	89, 500, 950
AgsI	TTSAA	9 cut(s)	368, 483, 527, 533, 540, 575, 586, 759, 1121
AhdI	GACNNNNNGTC	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	719, 751
AluBI	AGCT	5 cut(s)	274, 358, 647, 664, 997
AluI	AGCT	5 cut(s)	274, 358, 647, 664, 997
Alw26I	GTCTC	3 cut(s)	29, 42, 219
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	5 cut(s)	326, 528, 566, 934, 1121
AspA2I	CCTAGG	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	800
AspS9I	GGNCC	3 cut(s)	383, 511, 941
AsuHPI	GGTGA	6 cut(s)	26, 629, 662, 679, 995, 1139
AvaII	GGWCC	3 cut(s)	383, 511, 941
AvrII	CCTAGG	1 cut(s)	437
BanII	GRGCYC	2 cut(s)	445, 493
BauI	CACGAG	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	1 cut(s)	746
BcoDI	GTCTC	3 cut(s)	29, 42, 219
BfaI	CTAG	2 cut(s)	438, 998
BfmI	CTRYAG	2 cut(s)	516, 807
BisI	GCNGC	2 cut(s)	645, 796
BlnI	CCTAGG	1 cut(s)	437
BlsI	GCNGC	2 cut(s)	646, 797
BmcAI	AGTACT	1 cut(s)	423
Bme18I	GGWCC	3 cut(s)	383, 511, 941
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	3 cut(s)	383, 511, 941
BmiI	GGNNCC	4 cut(s)	435, 444, 492, 513
BmrI	ACTGGG	2 cut(s)	329, 434
BmsI	GCATC	2 cut(s)	322, 643
BmuI	ACTGGG	2 cut(s)	329, 434
BpiI	GAAGAC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BsaAI	YACGTR	1 cut(s)	1115
BsaJI	CCNNGG	2 cut(s)	437, 560
BsaXI	ACNNNNNCTCC	6 cut(s)	297, 327, 475, 505, 719, 749
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 500, 950
Bse1I	ACTGG	2 cut(s)	324, 429
BseDI	CCNNGG	2 cut(s)	437, 560
BseGI	GGATG	2 cut(s)	1057, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	89, 500, 950
BseMII	CTCAG	2 cut(s)	309, 765
BseNI	ACTGG	2 cut(s)	324, 429
BseXI	GCAGC	1 cut(s)	656
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	2 cut(s)	270, 798
Bsh1285I	CGRYCG	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	3 cut(s)	89, 500, 950
BsmAI	GTCTC	3 cut(s)	29, 42, 219
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	445, 493
Bsp143I	GATC	2 cut(s)	463, 970
BspACI	CCGC	7 cut(s)	61, 67, 268, 472, 614, 796, 853
BspCNI	CTCAG	2 cut(s)	308, 764
BspFNI	CGCG	2 cut(s)	270, 798
BspLI	GGNNCC	4 cut(s)	435, 444, 492, 513
BspMAI	CTGCAG	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	324, 429
BssECI	CCNNGG	2 cut(s)	437, 560
BssMI	GATC	2 cut(s)	463, 970
BssSI	CACGAG	1 cut(s)	786
BssT1I	CCWWGG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	786
Bst4CI	ACNGT	2 cut(s)	245, 689
BstBAI	YACGTR	1 cut(s)	1115
BstC8I	GCNNGC	3 cut(s)	272, 360, 995
BstDEI	CTNAG	3 cut(s)	295, 751, 1140
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	1057, 1105
BstFNI	CGCG	2 cut(s)	270, 798
BstHHI	GCGC	1 cut(s)	800
BstKTI	GATC	2 cut(s)	466, 973
BstMAI	GTCTC	3 cut(s)	29, 42, 219
BstMBI	GATC	2 cut(s)	463, 970
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 368, 653, 852, 1003
BstSFI	CTRYAG	2 cut(s)	516, 807
BstSNI	TACGTA	1 cut(s)	1115
BstUI	CGCG	2 cut(s)	270, 798
BstV1I	GCAGC	1 cut(s)	656
BstV2I	GAAGAC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	1057, 1105
BtsIMutI	CAGTG	2 cut(s)	241, 317
Cac8I	GCNNGC	3 cut(s)	272, 360, 995
CfoI	GCGC	1 cut(s)	800
Cfr13I	GGNCC	3 cut(s)	383, 511, 941
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	123, 146, 422
CviAII	CATG	3 cut(s)	508, 856, 1008
CviQI	GTAC	3 cut(s)	123, 146, 422
DdeI	CTNAG	3 cut(s)	295, 751, 1140
DpnI	GATC	2 cut(s)	465, 972
DpnII	GATC	2 cut(s)	463, 970
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	50
Eco105I	TACGTA	1 cut(s)	1115
Eco130I	CCWWGG	1 cut(s)	437
Eco24I	GRGCYC	2 cut(s)	445, 493
Eco47I	GGWCC	3 cut(s)	383, 511, 941
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	2 cut(s)	445, 493
ErhI	CCWWGG	1 cut(s)	437
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	3 cut(s)	511, 859, 1011
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	3 cut(s)	507, 855, 1007
FauI	CCCGC	2 cut(s)	465, 607
Fnu4HI	GCNGC	2 cut(s)	645, 796
FokI	GGATG	2 cut(s)	1064, 1112
FriOI	GRGCYC	2 cut(s)	445, 493
Fsp4HI	GCNGC	2 cut(s)	645, 796
FspBI	CTAG	2 cut(s)	438, 998
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	2 cut(s)	645, 796
GsaI	CCCAGC	1 cut(s)	138
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	800
Hin1II	CATG	3 cut(s)	511, 859, 1011
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HinfI	GANTC	5 cut(s)	31, 129, 180, 755, 1136
HphI	GGTGA	6 cut(s)	26, 629, 662, 679, 995, 1139
Hpy166II	GTNNAC	1 cut(s)	1094
Hpy188I	TCNGA	3 cut(s)	283, 383, 754
Hpy188III	TCNNGA	2 cut(s)	28, 353
Hpy8I	GTNNAC	1 cut(s)	1094
Hpy99I	CGWCG	2 cut(s)	153, 287
HpyAV	CCTTC	3 cut(s)	347, 875, 983
HpyCH4III	ACNGT	2 cut(s)	245, 689
HpyCH4IV	ACGT	3 cut(s)	40, 285, 1114
HpyCH4V	TGCA	3 cut(s)	317, 518, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 368, 653, 852, 1003
HpyF3I	CTNAG	3 cut(s)	295, 751, 1140
HpySE526I	ACGT	3 cut(s)	40, 285, 1114
Hsp92II	CATG	3 cut(s)	511, 859, 1011
HspAI	GCGC	1 cut(s)	798
Kzo9I	GATC	2 cut(s)	463, 970
LmnI	GCTCC	4 cut(s)	448, 496, 874, 894
LpnPI	CCDG	9 cut(s)	120, 288, 305, 410, 528, 633, 650, 863, 1082
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	2 cut(s)	322, 643
MaeI	CTAG	2 cut(s)	438, 998
MaeII	ACGT	3 cut(s)	40, 285, 1114
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	2 cut(s)	465, 972
MboI	GATC	2 cut(s)	463, 970
MboII	GAAGA	2 cut(s)	272, 692
MhlI	GDGCHC	2 cut(s)	445, 493
MluCI	AATT	9 cut(s)	326, 528, 533, 566, 905, 934, 978, 1020, 1121
MmeI	TCCRAC	4 cut(s)	306, 361, 388, 872
MseI	TTAA	2 cut(s)	932, 977
MslI	CAYNNNNRTG	1 cut(s)	1046
MspA1I	CMGCKG	1 cut(s)	647
MvnI	CGCG	2 cut(s)	270, 798
MwoI	GCNNNNNNNGC	5 cut(s)	60, 368, 653, 852, 1003
NdeII	GATC	2 cut(s)	463, 970
NlaIII	CATG	3 cut(s)	511, 859, 1011
NlaIV	GGNNCC	4 cut(s)	435, 444, 492, 513
PfeI	GAWTC	5 cut(s)	31, 129, 180, 755, 1136
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	646, 797
Ppu21I	YACGTR	1 cut(s)	1115
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	4 cut(s)	435, 444, 492, 513
PspPI	GGNCC	3 cut(s)	383, 511, 941
PstI	CTGCAG	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	3 cut(s)	124, 147, 423
RsaNI	GTAC	3 cut(s)	123, 146, 422
RseI	CAYNNNNRTG	1 cut(s)	1046
SaqAI	TTAA	2 cut(s)	932, 977
SatI	GCNGC	2 cut(s)	645, 796
Sau3AI	GATC	2 cut(s)	463, 970
Sau96I	GGNCC	3 cut(s)	383, 511, 941
ScaI	AGTACT	1 cut(s)	423
SduI	GDGCHC	2 cut(s)	445, 493
SfaNI	GCATC	2 cut(s)	322, 643
SfcI	CTRYAG	2 cut(s)	516, 807
SinI	GGWCC	3 cut(s)	383, 511, 941
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SnaBI	TACGTA	1 cut(s)	1115
Sse9I	AATT	9 cut(s)	326, 528, 533, 566, 905, 934, 978, 1020, 1121
SsiI	CCGC	7 cut(s)	61, 67, 268, 472, 614, 796, 853
SspMI	CTAG	2 cut(s)	438, 998
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	2 cut(s)	245, 689
TaiI	ACGT	3 cut(s)	43, 288, 1117
TaqI	TCGA	6 cut(s)	29, 127, 330, 352, 466, 547
TasI	AATT	9 cut(s)	326, 528, 533, 566, 905, 934, 978, 1020, 1121
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	1 cut(s)	798
TfiI	GAWTC	5 cut(s)	31, 129, 180, 755, 1136
Tru1I	TTAA	2 cut(s)	932, 977
Tru9I	TTAA	2 cut(s)	932, 977
TscAI	CASTG	2 cut(s)	248, 324
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	194, 329, 768, 833, 1002
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	2 cut(s)	248, 324
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	3 cut(s)	383, 511, 941
XapI	RAATTY	5 cut(s)	326, 528, 566, 934, 1121
XcmI	CCANNNNNNNNNTGG	2 cut(s)	86, 92
XmaJI	CCTAGG	1 cut(s)	437
XspI	CTAG	2 cut(s)	438, 998
ZrmI	AGTACT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.