Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Forward (+)

69416986 .. 69419694

Gene Structure 2709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG464000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTTGAGTGGTGGTGGCTCTCGTCTCTCGAATCACCTACGTCTGCGAGACTGCGACCTCCGCCGCCACCACCACCACCGCCACCAACCCCAACTTGGTTTTGGGTTCGTCTTTGGCTTTGGATTGGGTACTCGAATCGCTGGGCTACGAGTACGACGCTCTCTCAAACCCTTGTCTGCTCGTAGAATCTCGTCTTTCCGCTCTATCATTCATTCCAAGTCTCCCCCCGACATTCCTACACTCTCCCACTGTTTCAGCCAACGAGAAGACGAACGCGAGCTTCCCTCCGACGTATTGTCCTCAGTCGCAGGAGGAATAGTTGCACTGGGAAAATTCGATGCCCTTCATATTGGTCATCGAGAGCTTGCCATTCAAGCCTCAAAGGTCGGACCTCCATTTCTTTTATCATTTGTTGGAATGGCAGAAGTACTGGGTTGGGAACCTAGGGCTCCAATAGTTGCCAAATGTGATCGAAAGCGGGTTCTTTCCACATGGGCTCCATATTGTGGTAACATGGTCCCTGCAGAGTTTGAAATTCAATTTTCAAGTGTCCGACAACTCACTCCACGGGAATTTGTTGAAAAGTTATTGAAAGAGTTTGGAGTTCGTGGGGTTGTGGCAGGTGAAAACTACCGATTTGGATATAAAGCAGCTGGTGATGCGAGAGAGCTGGTGAAGTTGTGTGAAGAATACGGTATGGGGGCTTACATCATAAAATCTGTTATGGACAAGAACCAACACTCCATCAGCACGAACTCAGATTCAAAAGACAGAGGACAAGTTTCATCTACTCGTGTTCGCCGCGCCCTTGCTGTAGGAGATATGAAGTATGTGTGTCAACTTTTGGGTCGCCAACACCGCATGATATTGATTGCAAAGGAGCAGGAAGGTTTCCGTTGGAGCAGACATAAATTGTCAGTTCCAAAGTCGTGCATGTTAAATTTAGGTCCAAAAGAGGGTCTATATGGGAAGTGTGATCTCTTAATTGGTGATGAAGGCGACCTAGTAGTGCCATGTAGTGTAGTAATTGACACAGCATATATCCACATAGAAATGGATGAGGTAGGTACGTATGATGATATAGTTAGTAGTAAACAGGATGTGAGGCTCTTACGTATTGAATTTGGTGATTTGGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

380

Amino Acids

42.49

Weight (kDa)

9.16

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_syn	PF06574	104 - 251	4.5e-16	FAD synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	611
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccBSI	CCGCTC	1 cut(s)	201
AccII	CGCG	2 cut(s)	276, 804
AciI	CCGC	7 cut(s)	61, 64, 79, 199, 478, 802, 859
AcsI	RAATTY	5 cut(s)	332, 534, 572, 940, 1121
AfaI	GTAC	4 cut(s)	130, 153, 429, 1069
AfiI	CCNNNNNNNGG	3 cut(s)	95, 506, 956
AgsI	TTSAA	8 cut(s)	374, 533, 539, 546, 581, 592, 765, 1121
AhdI	GACNNNNNGTC	1 cut(s)	295
AloI	GAACNNNNNNTCC	2 cut(s)	725, 757
AluBI	AGCT	4 cut(s)	280, 364, 653, 670
AluI	AGCT	4 cut(s)	280, 364, 653, 670
Alw26I	GTCTC	3 cut(s)	29, 42, 225
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	5 cut(s)	332, 534, 572, 940, 1121
AspA2I	CCTAGG	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	806
AspS9I	GGNCC	3 cut(s)	389, 517, 947
AsuHPI	GGTGA	6 cut(s)	26, 635, 668, 685, 1001, 1139
AvaII	GGWCC	3 cut(s)	389, 517, 947
AvrII	CCTAGG	1 cut(s)	443
BanII	GRGCYC	2 cut(s)	451, 499
BauI	CACGAG	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	662
BccI	CCATC	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	29, 42, 225
BfaI	CTAG	2 cut(s)	444, 1004
BfmI	CTRYAG	2 cut(s)	522, 813
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	3 cut(s)	64, 651, 802
BlnI	CCTAGG	1 cut(s)	443
BlsI	GCNGC	3 cut(s)	65, 652, 803
BmcAI	AGTACT	1 cut(s)	429
Bme18I	GGWCC	3 cut(s)	389, 517, 947
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	389, 517, 947
BmiI	GGNNCC	4 cut(s)	441, 450, 498, 519
BmrI	ACTGGG	2 cut(s)	335, 440
BmsI	GCATC	2 cut(s)	328, 649
BmuI	ACTGGG	2 cut(s)	335, 440
BpiI	GAAGAC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BsaAI	YACGTR	2 cut(s)	1071, 1115
BsaJI	CCNNGG	2 cut(s)	443, 566
BsaXI	ACNNNNNCTCC	6 cut(s)	303, 333, 481, 511, 725, 755
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 506, 956
Bse1I	ACTGG	2 cut(s)	330, 435
BseDI	CCNNGG	2 cut(s)	443, 566
BseGI	GGATG	2 cut(s)	1063, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	95, 506, 956
BseMII	CTCAG	2 cut(s)	315, 771
BseNI	ACTGG	2 cut(s)	330, 435
BseXI	GCAGC	1 cut(s)	662
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	276, 804
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	95, 506, 956
BsmAI	GTCTC	3 cut(s)	29, 42, 225
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	503
Bsp1286I	GDGCHC	2 cut(s)	451, 499
Bsp143I	GATC	2 cut(s)	469, 976
BspACI	CCGC	7 cut(s)	61, 64, 79, 199, 478, 802, 859
BspCNI	CTCAG	2 cut(s)	314, 770
BspFNI	CGCG	2 cut(s)	276, 804
BspLI	GGNNCC	4 cut(s)	441, 450, 498, 519
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	611
BsrBI	CCGCTC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	330, 435
BssECI	CCNNGG	2 cut(s)	443, 566
BssMI	GATC	2 cut(s)	469, 976
BssSI	CACGAG	1 cut(s)	792
BssT1I	CCWWGG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	792
Bst4CI	ACNGT	2 cut(s)	251, 695
BstBAI	YACGTR	2 cut(s)	1071, 1115
BstC8I	GCNNGC	2 cut(s)	278, 366
BstDEI	CTNAG	2 cut(s)	301, 757
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	2 cut(s)	1063, 1105
BstFNI	CGCG	2 cut(s)	276, 804
BstHHI	GCGC	1 cut(s)	806
BstKTI	GATC	2 cut(s)	472, 979
BstMAI	GTCTC	3 cut(s)	29, 42, 225
BstMBI	GATC	2 cut(s)	469, 976
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 374, 659, 858
BstNSI	RCATGY	1 cut(s)	937
BstSFI	CTRYAG	2 cut(s)	522, 813
BstSNI	TACGTA	2 cut(s)	1071, 1115
BstUI	CGCG	2 cut(s)	276, 804
BstV1I	GCAGC	1 cut(s)	662
BstV2I	GAAGAC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	1063, 1105
BtsIMutI	CAGTG	2 cut(s)	247, 323
BveI	ACCTGC	1 cut(s)	611
Cac8I	GCNNGC	2 cut(s)	278, 366
CfoI	GCGC	1 cut(s)	806
Cfr13I	GGNCC	3 cut(s)	389, 517, 947
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	4 cut(s)	129, 152, 428, 1068
CviAII	CATG	5 cut(s)	492, 514, 862, 934, 1014
CviQI	GTAC	4 cut(s)	129, 152, 428, 1068
DdeI	CTNAG	2 cut(s)	301, 757
DpnI	GATC	2 cut(s)	471, 978
DpnII	GATC	2 cut(s)	469, 976
DriI	GACNNNNNGTC	1 cut(s)	295
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EciI	GGCGGA	1 cut(s)	50
Eco105I	TACGTA	2 cut(s)	1071, 1115
Eco130I	CCWWGG	1 cut(s)	443
Eco24I	GRGCYC	2 cut(s)	451, 499
Eco47I	GGWCC	3 cut(s)	389, 517, 947
EcoT14I	CCWWGG	1 cut(s)	443
EcoT38I	GRGCYC	2 cut(s)	451, 499
ErhI	CCWWGG	1 cut(s)	443
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	5 cut(s)	495, 517, 865, 937, 1017
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	5 cut(s)	491, 513, 861, 933, 1013
FauI	CCCGC	1 cut(s)	471
Fnu4HI	GCNGC	3 cut(s)	64, 651, 802
FokI	GGATG	2 cut(s)	1070, 1112
FriOI	GRGCYC	2 cut(s)	451, 499
Fsp4HI	GCNGC	3 cut(s)	64, 651, 802
FspBI	CTAG	2 cut(s)	444, 1004
GlaI	GCGC	1 cut(s)	805
GluI	GCNGC	3 cut(s)	64, 651, 802
GsaI	CCCAGC	1 cut(s)	144
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	806
Hin1II	CATG	5 cut(s)	495, 517, 865, 937, 1017
Hin6I	GCGC	1 cut(s)	804
HinP1I	GCGC	1 cut(s)	804
HincII	GTYRAC	1 cut(s)	839
HindII	GTYRAC	1 cut(s)	839
HinfI	GANTC	5 cut(s)	31, 135, 186, 761, 1136
HphI	GGTGA	6 cut(s)	26, 635, 668, 685, 1001, 1139
Hpy166II	GTNNAC	2 cut(s)	839, 1094
Hpy188I	TCNGA	4 cut(s)	289, 389, 554, 760
Hpy188III	TCNNGA	3 cut(s)	28, 359, 1140
Hpy8I	GTNNAC	2 cut(s)	839, 1094
Hpy99I	CGWCG	2 cut(s)	159, 293
HpyAV	CCTTC	3 cut(s)	353, 881, 989
HpyCH4III	ACNGT	2 cut(s)	251, 695
HpyCH4IV	ACGT	4 cut(s)	40, 291, 1070, 1114
HpyCH4V	TGCA	4 cut(s)	323, 524, 875, 933
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 374, 659, 858
HpyF3I	CTNAG	2 cut(s)	301, 757
HpySE526I	ACGT	4 cut(s)	40, 291, 1070, 1114
Hsp92II	CATG	5 cut(s)	495, 517, 865, 937, 1017
HspAI	GCGC	1 cut(s)	804
Kzo9I	GATC	2 cut(s)	469, 976
LmnI	GCTCC	4 cut(s)	454, 502, 880, 900
Lsp1109I	GCAGC	1 cut(s)	662
LweI	GCATC	2 cut(s)	328, 649
MaeI	CTAG	2 cut(s)	444, 1004
MaeII	ACGT	4 cut(s)	40, 291, 1070, 1114
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	2 cut(s)	471, 978
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	2 cut(s)	469, 976
MboII	GAAGA	2 cut(s)	278, 698
MhlI	GDGCHC	2 cut(s)	451, 499
MluCI	AATT	9 cut(s)	332, 534, 539, 572, 911, 940, 984, 1026, 1121
MmeI	TCCRAC	5 cut(s)	312, 367, 394, 577, 878
MseI	TTAA	2 cut(s)	938, 983
MslI	CAYNNNNRTG	1 cut(s)	1052
MspA1I	CMGCKG	1 cut(s)	653
MvnI	CGCG	2 cut(s)	276, 804
MwoI	GCNNNNNNNGC	4 cut(s)	60, 374, 659, 858
NdeII	GATC	2 cut(s)	469, 976
NlaIII	CATG	5 cut(s)	495, 517, 865, 937, 1017
NlaIV	GGNNCC	4 cut(s)	441, 450, 498, 519
NspI	RCATGY	1 cut(s)	937
PaqCI	CACCTGC	1 cut(s)	611
PfeI	GAWTC	5 cut(s)	31, 135, 186, 761, 1136
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	65, 652, 803
Ppu21I	YACGTR	2 cut(s)	1071, 1115
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	4 cut(s)	441, 450, 498, 519
PspPI	GGNCC	3 cut(s)	389, 517, 947
PstI	CTGCAG	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	4 cut(s)	130, 153, 429, 1069
RsaNI	GTAC	4 cut(s)	129, 152, 428, 1068
RseI	CAYNNNNRTG	1 cut(s)	1052
SaqAI	TTAA	2 cut(s)	938, 983
SatI	GCNGC	3 cut(s)	64, 651, 802
Sau3AI	GATC	2 cut(s)	469, 976
Sau96I	GGNCC	3 cut(s)	389, 517, 947
ScaI	AGTACT	1 cut(s)	429
SduI	GDGCHC	2 cut(s)	451, 499
SfaNI	GCATC	2 cut(s)	328, 649
SfcI	CTRYAG	2 cut(s)	522, 813
SinI	GGWCC	3 cut(s)	389, 517, 947
SmiMI	CAYNNNNRTG	1 cut(s)	1052
SnaBI	TACGTA	2 cut(s)	1071, 1115
Sse9I	AATT	9 cut(s)	332, 534, 539, 572, 911, 940, 984, 1026, 1121
SsiI	CCGC	7 cut(s)	61, 64, 79, 199, 478, 802, 859
SspMI	CTAG	2 cut(s)	444, 1004
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	2 cut(s)	251, 695
TaiI	ACGT	4 cut(s)	43, 294, 1073, 1117
TaqI	TCGA	5 cut(s)	29, 133, 336, 358, 472
TasI	AATT	9 cut(s)	332, 534, 539, 572, 911, 940, 984, 1026, 1121
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	2 cut(s)	66, 804
TfiI	GAWTC	5 cut(s)	31, 135, 186, 761, 1136
Tru1I	TTAA	2 cut(s)	938, 983
Tru9I	TTAA	2 cut(s)	938, 983
TscAI	CASTG	2 cut(s)	254, 330
TseI	GCWGC	1 cut(s)	650
TspDTI	ATGAA	5 cut(s)	200, 335, 774, 839, 1008
TspGWI	ACGGA	1 cut(s)	884
TspRI	CASTG	2 cut(s)	254, 330
Van91I	CCANNNNNTGG	1 cut(s)	506
VpaK11BI	GGWCC	3 cut(s)	389, 517, 947
XapI	RAATTY	5 cut(s)	332, 534, 572, 940, 1121
XceI	RCATGY	1 cut(s)	937
XcmI	CCANNNNNNNNNTGG	2 cut(s)	92, 98
XmaJI	CCTAGG	1 cut(s)	443
XspI	CTAG	2 cut(s)	444, 1004
ZrmI	AGTACT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.