Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Reverse (-)

75892254 .. 75903166

Gene Structure 10913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG442200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGATAATGAAGGAGTTGAAGCACCTGAATGTTTTGGGGATGGCAGTGATTTACATGATGAAGTGTGTGCTGAATCTGTACAAGTACCCGAAGAAGAACTTGGGGCCTCTGAGATTGATTGTGTGGACTGCGGAGGTTGCTATGATCAATATTATTGCTCCAATTTACTGGAGATTCAAAGGAGTGCCTGATGATTTCTTGGTTTACTCAACACGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

73

Amino Acids

8.63

Weight (kDa)

9.87

Isoelectric Point (pI)

27.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	4 - 69	1.8e-16	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	80, 86
AgsI	TTSAA	2 cut(s)	19, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AoxI	GGCC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	104
BccI	CCATC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	45
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	79, 85
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	1 cut(s)	106
CviKI_1	RGCY	1 cut(s)	106
CviQI	GTAC	2 cut(s)	79, 85
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	104
FaeI	CATG	1 cut(s)	58
FaiI	YATR	2 cut(s)	56, 143
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	144
FokI	GGATG	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	58
HinfI	GANTC	2 cut(s)	73, 174
Hpy166II	GTNNAC	2 cut(s)	126, 205
Hpy188I	TCNGA	1 cut(s)	111
Hpy8I	GTNNAC	2 cut(s)	126, 205
HpyAV	CCTTC	2 cut(s)	4, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	3 cut(s)	38, 154, 201
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	2 cut(s)	103, 106
MluCI	AATT	1 cut(s)	162
MnlI	CCTC	2 cut(s)	117, 127
MslI	CAYNNNNRTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	73, 174
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	104
RsaI	GTAC	2 cut(s)	80, 86
RsaNI	GTAC	2 cut(s)	79, 85
RseI	CAYNNNNRTG	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	104
SetI	ASST	3 cut(s)	27, 138, 221
SgeI	CNNG	8 cut(s)	37, 67, 94, 100, 112, 181, 200, 211
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	131
SspI	AATATT	1 cut(s)	151
TasI	AATT	1 cut(s)	162
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	73, 174
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	2 cut(s)	23, 74
TspRI	CASTG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.