Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Forward (+)

33741049 .. 33743621

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTTGAGTGGTGGTGGGTGTCGTCTCTCCACTCATCTACGGCTGCGGGACTGCGACCTCCGCCACCAGCCCCAACTTGGTTTTGGTTTTGACTTTAGATTCGGTTCTCCAATCTCTCGCCTGCGACGCTCTCTCACTCTCAATCTCAAACCCTTGTCTCCTCGTCCAATCTCCTCTTTTCGCTCTATCATTCTTTCCAAGCGCGTTCCTTCCCTCTCCCACTGTTTCAGCCAACAACAAGACCAACGGGAGCATCCCTCCGACGCATTGTCCTCTGTGGCAGGTGGAATAGTTGCATTGGGAAAATTTGATGCCCTTCATATTGGTCATAGGGAACTTGTTATTCAAGCATCAAAGGTCGGACCTCCATTTCTTTTATCATTTGTTGGAATAGCTGAAGTACTCGGTTGGGAACCCAGGGCTCCAATAGTTGCCAAATGTGATCGAAAGAGAGTTCTTTCGACTTGGGCCCCATATTGTGGTAACATGGTCCCTGAAGAGTTTGAAATTCAATTTTCAAGTGTTCGAAAACTCACTCCACGGGAATTTGTTGAAAAGTTATTGAAAGAGTTTGGAGTTCGGGGGGTTGTGGCAGGTCAAAACTACCGATTTGGATATAAAGCAGCTGGTGATGCGACAGAGCTGGTGAAGTTGTGTGAAGAATATGGTATGGGGGCTTACATCATAAAATCTGTTATGGACAAGAACCCATACAACATCAACATGAACTCAGATTCAAAAGACAGAGGACAAGTTTCATCCACTCGTGTTCGCCGCGCCCTTGCTGTAGGAGATATGAAGTACGTGTCTAAACTTTTGGGTCGCCAACATCGTTTGATATTGATTGCAAAGGATGAGGAAGGCTTTCCTTGGAGCAGGCATAAATTGTCAGTTCCAAAGTCGTGTATGTTAAATTTAGGTCCAAAAGAGGGTCTATATGGGAAGTGTTATCTGTTACTTGGGGATGAAGGCGACCTGGTTGTCCCGTGTAGTGTAGTAATTGATACATCATATATCCACATAGAAATGGATGAGGTAGGTAGGCATGATGACATAGTTAGTAGTAAACAGAATGTGAGGCTGTTACGTATTGAATTTGGTGATATGGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

372

Amino Acids

41.55

Weight (kDa)

9.16

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_syn	PF06574	173 - 235	1.1e-10	FAD synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
AasI	GACNNNNNNGTC	1 cut(s)	980
Acc36I	ACCTGC	2 cut(s)	272, 584
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccII	CGCG	2 cut(s)	204, 777
AciI	CCGC	3 cut(s)	46, 61, 775
AcsI	RAATTY	5 cut(s)	305, 507, 545, 913, 1094
AcuI	CTGAAG	2 cut(s)	417, 516
AfaI	GTAC	2 cut(s)	402, 803
AfiI	CCNNNNNNNGG	3 cut(s)	77, 479, 929
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	8 cut(s)	347, 506, 512, 519, 554, 565, 738, 1094
AhdI	GACNNNNNGTC	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	416, 975
AluBI	AGCT	3 cut(s)	395, 626, 643
AluI	AGCT	3 cut(s)	395, 626, 643
Alw26I	GTCTC	2 cut(s)	29, 162
AoxI	GGCC	1 cut(s)	468
ApaI	GGGCCC	1 cut(s)	472
ApeKI	GCWGC	2 cut(s)	43, 623
ApoI	RAATTY	5 cut(s)	305, 507, 545, 913, 1094
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
Asp700I	GAANNNNTTC	1 cut(s)	864
AspLEI	GCGC	2 cut(s)	204, 779
AspS9I	GGNCC	5 cut(s)	362, 468, 469, 490, 920
AsuHPI	GGTGA	3 cut(s)	641, 658, 1112
AsuII	TTCGAA	1 cut(s)	526
AvaII	GGWCC	3 cut(s)	362, 490, 920
BaeGI	GKGCMC	1 cut(s)	472
BanII	GRGCYC	2 cut(s)	424, 472
BauI	CACGAG	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	30, 635
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	418, 977
BcoDI	GTCTC	2 cut(s)	29, 162
BfmI	CTRYAG	1 cut(s)	786
BfuAI	ACCTGC	2 cut(s)	272, 584
BisI	GCNGC	3 cut(s)	44, 624, 775
BlsI	GCNGC	3 cut(s)	45, 625, 776
BmcAI	AGTACT	1 cut(s)	402
Bme1390I	CCNGG	2 cut(s)	418, 977
Bme18I	GGWCC	3 cut(s)	362, 490, 920
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmgT120I	GGNCC	5 cut(s)	362, 468, 469, 490, 920
BmiI	GGNNCC	5 cut(s)	414, 423, 470, 471, 492
BmrFI	CCNGG	2 cut(s)	418, 977
BmsI	GCATC	4 cut(s)	262, 301, 359, 622
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
Bpu14I	TTCGAA	1 cut(s)	526
BsaAI	YACGTR	2 cut(s)	805, 1088
BsaJI	CCNNGG	4 cut(s)	416, 417, 539, 869
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 479, 929
BseBI	CCWGG	2 cut(s)	418, 977
BseDI	CCNNGG	4 cut(s)	416, 417, 539, 869
BseGI	GGATG	5 cut(s)	253, 758, 859, 970, 1036
BseLI	CCNNNNNNNGG	3 cut(s)	77, 479, 929
BseMII	CTCAG	1 cut(s)	744
BseRI	GAGGAG	2 cut(s)	150, 163
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	2 cut(s)	30, 635
Bsh1236I	CGCG	2 cut(s)	204, 777
BshFI	GGCC	1 cut(s)	470
BslFI	GGGAC	3 cut(s)	62, 476, 968
BslI	CCNNNNNNNGG	3 cut(s)	77, 479, 929
BsmAI	GTCTC	2 cut(s)	29, 162
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	3 cut(s)	62, 476, 968
BsnI	GGCC	1 cut(s)	470
Bsp119I	TTCGAA	1 cut(s)	526
Bsp120I	GGGCCC	1 cut(s)	468
Bsp1286I	GDGCHC	2 cut(s)	424, 472
Bsp143I	GATC	1 cut(s)	442
BspACI	CCGC	3 cut(s)	46, 61, 775
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	743
BspFNI	CGCG	2 cut(s)	204, 777
BspLI	GGNNCC	5 cut(s)	414, 423, 470, 471, 492
BspMI	ACCTGC	2 cut(s)	272, 584
BspT104I	TTCGAA	1 cut(s)	526
BssECI	CCNNGG	4 cut(s)	416, 417, 539, 869
BssMI	GATC	1 cut(s)	442
BssSI	CACGAG	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	869
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	418, 977
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	492
BstBAI	YACGTR	2 cut(s)	805, 1088
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	122, 878
BstDEI	CTNAG	1 cut(s)	730
BstDSI	CCRYGG	1 cut(s)	539
BstF5I	GGATG	5 cut(s)	253, 758, 859, 970, 1036
BstFNI	CGCG	2 cut(s)	204, 777
BstHHI	GCGC	2 cut(s)	204, 779
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	2 cut(s)	29, 162
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 126, 632
BstNI	CCWGG	2 cut(s)	418, 977
BstSCI	CCNGG	2 cut(s)	416, 975
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	472
BstSNI	TACGTA	1 cut(s)	1088
BstUI	CGCG	2 cut(s)	204, 777
BstV1I	GCAGC	2 cut(s)	30, 635
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	539
BtsCI	GGATG	5 cut(s)	253, 758, 859, 970, 1036
BtsIMutI	CAGTG	1 cut(s)	220
BveI	ACCTGC	2 cut(s)	272, 584
Cac8I	GCNNGC	2 cut(s)	122, 878
CfoI	GCGC	2 cut(s)	204, 779
Cfr13I	GGNCC	5 cut(s)	362, 468, 469, 490, 920
CseI	GACGC	2 cut(s)	135, 272
CsiI	ACCWGGT	1 cut(s)	975
Csp6I	GTAC	2 cut(s)	401, 802
CviAII	CATG	3 cut(s)	487, 724, 1046
CviQI	GTAC	2 cut(s)	401, 802
DdeI	CTNAG	1 cut(s)	730
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
DrdI	GACNNNNNNGTC	1 cut(s)	980
DriI	GACNNNNNGTC	1 cut(s)	268
DseDI	GACNNNNNNGTC	1 cut(s)	980
Eam1104I	CTCTTC	1 cut(s)	492
Eam1105I	GACNNNNNGTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	50
Eco105I	TACGTA	1 cut(s)	1088
Eco130I	CCWWGG	1 cut(s)	869
Eco24I	GRGCYC	2 cut(s)	424, 472
Eco47I	GGWCC	3 cut(s)	362, 490, 920
Eco57I	CTGAAG	2 cut(s)	417, 516
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	416, 975
EcoT14I	CCWWGG	1 cut(s)	869
EcoT38I	GRGCYC	2 cut(s)	424, 472
ErhI	CCWWGG	1 cut(s)	869
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	3 cut(s)	490, 727, 1049
FaqI	GGGAC	3 cut(s)	62, 476, 968
FatI	CATG	3 cut(s)	486, 723, 1045
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	44, 624, 775
FokI	GGATG	5 cut(s)	240, 745, 866, 977, 1043
FriOI	GRGCYC	2 cut(s)	424, 472
Fsp4HI	GCNGC	3 cut(s)	44, 624, 775
GlaI	GCGC	2 cut(s)	203, 778
GluI	GCNGC	3 cut(s)	44, 624, 775
HaeIII	GGCC	1 cut(s)	470
HgaI	GACGC	2 cut(s)	135, 272
HhaI	GCGC	2 cut(s)	204, 779
Hin1II	CATG	3 cut(s)	490, 727, 1049
Hin6I	GCGC	2 cut(s)	202, 777
HinP1I	GCGC	2 cut(s)	202, 777
HinfI	GANTC	2 cut(s)	99, 734
HphI	GGTGA	3 cut(s)	641, 658, 1112
Hpy166II	GTNNAC	1 cut(s)	1067
Hpy188I	TCNGA	3 cut(s)	262, 362, 733
Hpy8I	GTNNAC	1 cut(s)	1067
Hpy99I	CGWCG	2 cut(s)	129, 266
HpyAV	CCTTC	4 cut(s)	219, 326, 854, 962
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	2 cut(s)	804, 1087
HpyCH4V	TGCA	2 cut(s)	296, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 126, 632
HpyF3I	CTNAG	1 cut(s)	730
HpySE526I	ACGT	2 cut(s)	804, 1087
Hsp92II	CATG	3 cut(s)	490, 727, 1049
HspAI	GCGC	2 cut(s)	202, 777
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	3 cut(s)	250, 427, 873
Lsp1109I	GCAGC	2 cut(s)	30, 635
LweI	GCATC	4 cut(s)	262, 301, 359, 622
MabI	ACCWGGT	1 cut(s)	975
MaeII	ACGT	2 cut(s)	804, 1087
MaeIII	GTNAC	3 cut(s)	482, 954, 1083
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	2 cut(s)	509, 671
MhlI	GDGCHC	2 cut(s)	424, 472
MluCI	AATT	8 cut(s)	305, 507, 512, 545, 884, 913, 999, 1094
MmeI	TCCRAC	3 cut(s)	285, 340, 367
MroXI	GAANNNNTTC	1 cut(s)	864
MseI	TTAA	1 cut(s)	911
MslI	CAYNNNNRTG	2 cut(s)	722, 1025
MspA1I	CMGCKG	1 cut(s)	626
MspR9I	CCNGG	2 cut(s)	418, 977
MvaI	CCWGG	2 cut(s)	418, 977
MvnI	CGCG	2 cut(s)	204, 777
MwoI	GCNNNNNNNGC	3 cut(s)	60, 126, 632
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	3 cut(s)	490, 727, 1049
NlaIV	GGNNCC	5 cut(s)	414, 423, 470, 471, 492
NspV	TTCGAA	1 cut(s)	526
PaqCI	CACCTGC	1 cut(s)	272
PasI	CCCWGGG	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	864
PfeI	GAWTC	2 cut(s)	99, 734
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	45, 625, 776
Ppu21I	YACGTR	2 cut(s)	805, 1088
Psp6I	CCWGG	2 cut(s)	416, 975
PspGI	CCWGG	2 cut(s)	416, 975
PspN4I	GGNNCC	5 cut(s)	414, 423, 470, 471, 492
PspOMI	GGGCCC	1 cut(s)	468
PspPI	GGNCC	5 cut(s)	362, 468, 469, 490, 920
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	2 cut(s)	402, 803
RsaNI	GTAC	2 cut(s)	401, 802
RseI	CAYNNNNRTG	2 cut(s)	722, 1025
SaqAI	TTAA	1 cut(s)	911
SatI	GCNGC	3 cut(s)	44, 624, 775
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	5 cut(s)	362, 468, 469, 490, 920
ScaI	AGTACT	1 cut(s)	402
ScrFI	CCNGG	2 cut(s)	418, 977
SduI	GDGCHC	2 cut(s)	424, 472
SexAI	ACCWGGT	1 cut(s)	975
SfaNI	GCATC	4 cut(s)	262, 301, 359, 622
SfcI	CTRYAG	1 cut(s)	786
SfuI	TTCGAA	1 cut(s)	526
SinI	GGWCC	3 cut(s)	362, 490, 920
SmiMI	CAYNNNNRTG	2 cut(s)	722, 1025
SnaBI	TACGTA	1 cut(s)	1088
Sse9I	AATT	8 cut(s)	305, 507, 512, 545, 884, 913, 999, 1094
SsiI	CCGC	3 cut(s)	46, 61, 775
StyD4I	CCNGG	2 cut(s)	416, 975
StyI	CCWWGG	1 cut(s)	869
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	2 cut(s)	807, 1090
TaqI	TCGA	3 cut(s)	445, 461, 526
TasI	AATT	8 cut(s)	305, 507, 512, 545, 884, 913, 999, 1094
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	1 cut(s)	777
TfiI	GAWTC	2 cut(s)	99, 734
Tru1I	TTAA	1 cut(s)	911
Tru9I	TTAA	1 cut(s)	911
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	2 cut(s)	43, 623
TspDTI	ATGAA	5 cut(s)	308, 740, 747, 812, 981
TspRI	CASTG	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	3 cut(s)	362, 490, 920
XapI	RAATTY	5 cut(s)	305, 507, 545, 913, 1094
XcmI	CCANNNNNNNNNTGG	2 cut(s)	74, 80
XmnI	GAANNNNTTC	1 cut(s)	864
ZrmI	AGTACT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.