Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Forward (+)

73019543 .. 73022190

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG437800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTTGAGTGGTGGTGGCTCTCGTCTCTCGAATCACCTACGTCAGCGAGACTGCGACCTCCGCCACCGCCACCACCACCAACCCCAACTTGGTTTTGGGTTCGTCTTTGGCTTTGGATTGGGTACTCGAATCGCTGGGCTACGAGTACGACGCTCTCTCAAACCCTTGTCTGCTCGTAGAATCTCGTCTTTCCGCTCTATCATTCATTCCAAGTCTCCCCCCGACATTCCTACACTCTCCCAGTGTTTCAGCCAACAAGAAGACGAACGCGAGCTTCCCTCCGACGTATTGTCCTCAGTCGCAGGAGGAATAGTTGCACTGGGAAAATTCGATGCCCTTCATATTGGTCATCGAGAGCTTGCCATTCAAGCCTCAAAGGTCGGACCTCCATTTCTTTTATCATTTGTTGGAATGGCAGAAGTACTGGGTTGGGAACCTAGGGCTCCAATAGTTGCCAAATGTGATCGAAAGCGGGTTCTGTCAACTTGGGCTCCATATTGTGGTAACATGGTCCCTGCAGAGTTTGAAATTCAATTTTCAAGTGTTCGACAACTCACTCCACGGGAATTTGTTGAAAAGTTATTGAAAGAGTTTGGAGTTCGTGGGGTTGTGGCGGGTGAAAACTACCGATTTGGATATAAAGCAGCTGGTGATGCGAGAGAGCTGGTGAAGTTGTGTGAAGAATACGGTATGGGGGCTTACATCATAAAATCTGTTATGGACAAGAACCAACACTCCATCAGCACGAACTCAGATTCAAAAGACAGAGGACAAGTTTCATCTACTCGTGTTCGCCGCGCCCTTGCTGTAGGAGATATGAAGTATGTATCTCAACTTTTGGGTCGCCAACACCGCATGATATTGATTGCAAAGGAGCAGGAAGGTTTCCGTTGGAGCAGACATAAATTGTCAGTTCCAAAGTCGTGTATGTTAAATTTAGGTCCAAAAGAGGGTCTATATGGGAAGTGTGATCTCTTAATTGGTGATGAAGGCGAGCTAGTAGTGCCATGTAGTGTAGTAATTGACACAGCATATATCCACATAGAAATGGATGAGGTAGGTGTAGGTATGTATGATGATATAGTTAGTAGTAAACAGGATGTGAGGCTCTTACGTATTGAATTTGGTGATTTGGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003919 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006747 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046443 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0070566 GO:0071704 GO:0072387 GO:0072388 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_syn

Protein Analysis

380

Amino Acids

42.36

Weight (kDa)

9.03

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_syn	PF06574	102 - 249	4.5e-16	FAD synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccBSI	CCGCTC	1 cut(s)	195
AccII	CGCG	2 cut(s)	270, 798
AciI	CCGC	7 cut(s)	61, 67, 193, 472, 614, 796, 853
AcsI	RAATTY	5 cut(s)	326, 528, 566, 934, 1121
AfaI	GTAC	3 cut(s)	124, 147, 423
AfiI	CCNNNNNNNGG	3 cut(s)	89, 500, 950
AgsI	TTSAA	8 cut(s)	368, 527, 533, 540, 575, 586, 759, 1121
AhdI	GACNNNNNGTC	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	719, 751
AluBI	AGCT	5 cut(s)	274, 358, 647, 664, 997
AluI	AGCT	5 cut(s)	274, 358, 647, 664, 997
Alw26I	GTCTC	3 cut(s)	29, 42, 219
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	5 cut(s)	326, 528, 566, 934, 1121
AspA2I	CCTAGG	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	800
AspS9I	GGNCC	3 cut(s)	383, 511, 941
AsuHPI	GGTGA	6 cut(s)	26, 629, 662, 679, 995, 1139
AvaII	GGWCC	3 cut(s)	383, 511, 941
AvrII	CCTAGG	1 cut(s)	437
BanII	GRGCYC	2 cut(s)	445, 493
BauI	CACGAG	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	1 cut(s)	746
BcoDI	GTCTC	3 cut(s)	29, 42, 219
BfaI	CTAG	2 cut(s)	438, 998
BfmI	CTRYAG	2 cut(s)	516, 807
BisI	GCNGC	2 cut(s)	645, 796
BlnI	CCTAGG	1 cut(s)	437
BlsI	GCNGC	2 cut(s)	646, 797
BmcAI	AGTACT	1 cut(s)	423
Bme18I	GGWCC	3 cut(s)	383, 511, 941
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	3 cut(s)	383, 511, 941
BmiI	GGNNCC	4 cut(s)	435, 444, 492, 513
BmrI	ACTGGG	3 cut(s)	235, 329, 434
BmsI	GCATC	2 cut(s)	322, 643
BmuI	ACTGGG	3 cut(s)	235, 329, 434
BpiI	GAAGAC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BsaAI	YACGTR	1 cut(s)	1115
BsaJI	CCNNGG	2 cut(s)	437, 560
BsaXI	ACNNNNNCTCC	6 cut(s)	297, 327, 475, 505, 719, 749
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 500, 950
Bse1I	ACTGG	3 cut(s)	241, 324, 429
BseDI	CCNNGG	2 cut(s)	437, 560
BseGI	GGATG	2 cut(s)	1057, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	89, 500, 950
BseMII	CTCAG	2 cut(s)	309, 765
BseNI	ACTGG	3 cut(s)	241, 324, 429
BseXI	GCAGC	1 cut(s)	656
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	2 cut(s)	270, 798
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	3 cut(s)	89, 500, 950
BsmAI	GTCTC	3 cut(s)	29, 42, 219
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	445, 493
Bsp143I	GATC	2 cut(s)	463, 970
BspACI	CCGC	7 cut(s)	61, 67, 193, 472, 614, 796, 853
BspCNI	CTCAG	2 cut(s)	308, 764
BspFNI	CGCG	2 cut(s)	270, 798
BspLI	GGNNCC	4 cut(s)	435, 444, 492, 513
BspMAI	CTGCAG	1 cut(s)	520
BsrBI	CCGCTC	1 cut(s)	195
BsrI	ACTGG	3 cut(s)	241, 324, 429
BssECI	CCNNGG	2 cut(s)	437, 560
BssMI	GATC	2 cut(s)	463, 970
BssSI	CACGAG	1 cut(s)	786
BssT1I	CCWWGG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	786
Bst4CI	ACNGT	1 cut(s)	689
BstBAI	YACGTR	1 cut(s)	1115
BstC8I	GCNNGC	3 cut(s)	272, 360, 995
BstDEI	CTNAG	3 cut(s)	295, 751, 1140
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	1057, 1105
BstFNI	CGCG	2 cut(s)	270, 798
BstHHI	GCGC	1 cut(s)	800
BstKTI	GATC	2 cut(s)	466, 973
BstMAI	GTCTC	3 cut(s)	29, 42, 219
BstMBI	GATC	2 cut(s)	463, 970
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 368, 653, 852, 1003
BstSFI	CTRYAG	2 cut(s)	516, 807
BstSNI	TACGTA	1 cut(s)	1115
BstUI	CGCG	2 cut(s)	270, 798
BstV1I	GCAGC	1 cut(s)	656
BstV2I	GAAGAC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	1057, 1105
BtsIMutI	CAGTG	2 cut(s)	248, 317
Cac8I	GCNNGC	3 cut(s)	272, 360, 995
CfoI	GCGC	1 cut(s)	800
Cfr13I	GGNCC	3 cut(s)	383, 511, 941
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	123, 146, 422
CviAII	CATG	3 cut(s)	508, 856, 1008
CviQI	GTAC	3 cut(s)	123, 146, 422
DdeI	CTNAG	3 cut(s)	295, 751, 1140
DpnI	GATC	2 cut(s)	465, 972
DpnII	GATC	2 cut(s)	463, 970
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	50
Eco105I	TACGTA	1 cut(s)	1115
Eco130I	CCWWGG	1 cut(s)	437
Eco24I	GRGCYC	2 cut(s)	445, 493
Eco47I	GGWCC	3 cut(s)	383, 511, 941
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	2 cut(s)	445, 493
ErhI	CCWWGG	1 cut(s)	437
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	3 cut(s)	511, 859, 1011
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	3 cut(s)	507, 855, 1007
FauI	CCCGC	2 cut(s)	465, 607
Fnu4HI	GCNGC	2 cut(s)	645, 796
FokI	GGATG	2 cut(s)	1064, 1112
FriOI	GRGCYC	2 cut(s)	445, 493
Fsp4HI	GCNGC	2 cut(s)	645, 796
FspBI	CTAG	2 cut(s)	438, 998
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	2 cut(s)	645, 796
GsaI	CCCAGC	1 cut(s)	138
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	800
Hin1II	CATG	3 cut(s)	511, 859, 1011
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	5 cut(s)	31, 129, 180, 755, 1136
HphI	GGTGA	6 cut(s)	26, 629, 662, 679, 995, 1139
Hpy166II	GTNNAC	2 cut(s)	483, 1094
Hpy188I	TCNGA	3 cut(s)	283, 383, 754
Hpy188III	TCNNGA	2 cut(s)	28, 353
Hpy8I	GTNNAC	2 cut(s)	483, 1094
Hpy99I	CGWCG	2 cut(s)	153, 287
HpyAV	CCTTC	3 cut(s)	347, 875, 983
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	3 cut(s)	40, 285, 1114
HpyCH4V	TGCA	3 cut(s)	317, 518, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 368, 653, 852, 1003
HpyF3I	CTNAG	3 cut(s)	295, 751, 1140
HpySE526I	ACGT	3 cut(s)	40, 285, 1114
Hsp92II	CATG	3 cut(s)	511, 859, 1011
HspAI	GCGC	1 cut(s)	798
Kzo9I	GATC	2 cut(s)	463, 970
LmnI	GCTCC	4 cut(s)	448, 496, 874, 894
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	2 cut(s)	322, 643
MaeI	CTAG	2 cut(s)	438, 998
MaeII	ACGT	3 cut(s)	40, 285, 1114
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	2 cut(s)	465, 972
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	2 cut(s)	463, 970
MboII	GAAGA	2 cut(s)	272, 692
MhlI	GDGCHC	2 cut(s)	445, 493
MluCI	AATT	9 cut(s)	326, 528, 533, 566, 905, 934, 978, 1020, 1121
MmeI	TCCRAC	4 cut(s)	306, 361, 388, 872
MseI	TTAA	2 cut(s)	932, 977
MslI	CAYNNNNRTG	1 cut(s)	1046
MspA1I	CMGCKG	1 cut(s)	647
MvnI	CGCG	2 cut(s)	270, 798
MwoI	GCNNNNNNNGC	5 cut(s)	60, 368, 653, 852, 1003
NdeII	GATC	2 cut(s)	463, 970
NlaIII	CATG	3 cut(s)	511, 859, 1011
NlaIV	GGNNCC	4 cut(s)	435, 444, 492, 513
PfeI	GAWTC	5 cut(s)	31, 129, 180, 755, 1136
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	2 cut(s)	646, 797
Ppu21I	YACGTR	1 cut(s)	1115
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	4 cut(s)	435, 444, 492, 513
PspPI	GGNCC	3 cut(s)	383, 511, 941
PstI	CTGCAG	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	3 cut(s)	124, 147, 423
RsaNI	GTAC	3 cut(s)	123, 146, 422
RseI	CAYNNNNRTG	1 cut(s)	1046
SaqAI	TTAA	2 cut(s)	932, 977
SatI	GCNGC	2 cut(s)	645, 796
Sau3AI	GATC	2 cut(s)	463, 970
Sau96I	GGNCC	3 cut(s)	383, 511, 941
ScaI	AGTACT	1 cut(s)	423
SduI	GDGCHC	2 cut(s)	445, 493
SfaNI	GCATC	2 cut(s)	322, 643
SfcI	CTRYAG	2 cut(s)	516, 807
SinI	GGWCC	3 cut(s)	383, 511, 941
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SnaBI	TACGTA	1 cut(s)	1115
Sse9I	AATT	9 cut(s)	326, 528, 533, 566, 905, 934, 978, 1020, 1121
SsiI	CCGC	7 cut(s)	61, 67, 193, 472, 614, 796, 853
SspMI	CTAG	2 cut(s)	438, 998
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	3 cut(s)	43, 288, 1117
TaqI	TCGA	6 cut(s)	29, 127, 330, 352, 466, 547
TasI	AATT	9 cut(s)	326, 528, 533, 566, 905, 934, 978, 1020, 1121
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	1 cut(s)	798
TfiI	GAWTC	5 cut(s)	31, 129, 180, 755, 1136
Tru1I	TTAA	2 cut(s)	932, 977
Tru9I	TTAA	2 cut(s)	932, 977
TscAI	CASTG	2 cut(s)	248, 324
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	194, 329, 768, 833, 1002
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	2 cut(s)	248, 324
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	3 cut(s)	383, 511, 941
XapI	RAATTY	5 cut(s)	326, 528, 566, 934, 1121
XcmI	CCANNNNNNNNNTGG	2 cut(s)	86, 92
XmaJI	CCTAGG	1 cut(s)	437
XspI	CTAG	2 cut(s)	438, 998
ZrmI	AGTACT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.