Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000015.1

Orthogroup ID

OG0003257

Physical Location & Seq

Genomic Coordinates Forward (+)

211320 .. 211817

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000015.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgccaaactgttcttgcctaaatgttacacttagttgtgtcaaatttggtctttttctgaattcttttgcacgagatcattggggaatggatcctatgaatgctggggcaagtagagctaagaaggagttgaagcacctgaatgttttggggatggcagtgatttacatgatgaagtgtgtgctgaatctgtacaattacgcgaagaagaacttggggcctctgagattgattgtatggactgcggaggttgctatgatcaatattattgctccaatttactggagattcaaaggagtgcctgatgatttcttggtttactcaacacgaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

111

Amino Acids

12.69

Weight (kDa)

9.61

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08340 AT5G08340 AT5G23330
fragaria_vesca	FvH4_4g37140
malus_domestica	MD13G1003200.v1.1 MD16G1004200.v1.1
prunus_persica	Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1 Prupe.1G349200_v2.0.a1
pyrus_communis	pycom13g00270 pycom16g00180
rosa_chinensis	RchiOBHm_Chr2g0144991 RchiOBHm_Chr4g0446941 RchiOBHm_Chr5g0081501 RchiOBHm_Chr6g0272191 RchiOBHm_Chr7g0231651
rosa_laevigata	RLG00000001051 RLG00000020160 RLG00000035583 RLG00000035993
rosa_multiflora	Rmu_co8227451.1_g000001 Rmu_sc0000015.1_g000048 Rmu_sc0002784.1_g000009
rosa_roxburghii	Rroxscaffold_3G00229270 Rroxscaffold_3G00237760
rosa_rugosa	Rorug01G0193900 Rorug01G0194000
rosa_samantha	Rh2DG102300 Rh4AG437800 Rh4BG446700 Rh4CG464000 Rh4DG445400 Rh5AG442200 Rh5DG474200 Rh6BG133900
rosa_wichuraiana	Rw4G037440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	2 cut(s)	86, 99
AcsI	RAATTY	2 cut(s)	44, 61
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	133, 292
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	2 cut(s)	86, 99
AoxI	GGCC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	44, 61
AspS9I	GGNCC	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	91
BauI	CACGAG	1 cut(s)	72
BccI	CCATC	1 cut(s)	148
BclI	TGATCA	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	93, 219
BpmI	CTGGAG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	287
BseYI	CCCAGC	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	220
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	76, 91, 258
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	93, 219
BspPI	GGATC	2 cut(s)	86, 99
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	3 cut(s)	76, 91, 258
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	32, 120, 224
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	3 cut(s)	79, 94, 261
BstMBI	GATC	3 cut(s)	76, 91, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 251
BstUI	CGCG	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	2 cut(s)	119, 220
CviKI_1	RGCY	2 cut(s)	119, 220
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	3 cut(s)	32, 120, 224
DpnI	GATC	3 cut(s)	78, 93, 260
DpnII	GATC	3 cut(s)	76, 91, 258
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	172
FaiI	YATR	4 cut(s)	98, 170, 238, 257
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	258
FokI	GGATG	1 cut(s)	166
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	172
HinfI	GANTC	2 cut(s)	187, 288
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	60, 225
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	118, 324
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 251
HpyF3I	CTNAG	3 cut(s)	32, 120, 224
Hsp92II	CATG	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	76, 91, 258
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	4 cut(s)	90, 152, 268, 315
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	78, 93, 260
MboI	GATC	3 cut(s)	76, 91, 258
MboII	GAAGA	2 cut(s)	217, 220
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	4 cut(s)	44, 61, 196, 276
MnlI	CCTC	2 cut(s)	231, 241
MslI	CAYNNNNRTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	106
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	116, 251
NdeII	GATC	3 cut(s)	76, 91, 258
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	93, 219
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	187, 288
PspFI	CCCAGC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	93, 219
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	141
Sau3AI	GATC	3 cut(s)	76, 91, 258
Sau96I	GGNCC	1 cut(s)	218
SetI	ASST	4 cut(s)	121, 141, 252, 335
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	44, 61, 196, 276
SsiI	CCGC	1 cut(s)	245
SspI	AATATT	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	11
TasI	AATT	4 cut(s)	44, 61, 196, 276
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	187, 288
TscAI	CASTG	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	113, 188
TspRI	CASTG	1 cut(s)	165
XapI	RAATTY	2 cut(s)	44, 61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.