AT5G09390

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003252
Physical Location & Seq
Forward (+)
2913482 .. 2915979
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G09390.2

Sequence Viewer

Length: 1056 bp
ATGGCAGATAGTTCGTCGAGGAGGAACCTTAAACGATCCTTCTTAGAAGATGAAGATTCCGATAAACAACCTCCCGAAAAGCGAGTACGGTTTCCAAAGGGGAAGAAGTCGAAACCTGAACAGCTCTTAGAGGAAGAAGCTTTAGCCCGCCGCAAAGCCCGTGATGCTGCTAAGGAGCGTGCAAAGATTCGCAATCAGAATACTACTAAGCTCTTTATCGAAGATGACAGTGATGATATTAATCAGGCTCAGGAGACTTATGAGGATGATGGCAATCGCACAGAAGATGGGATCCAGATTGAAGCTTTTAGTCTGGACAGAGAGAAAGAAGAAGGTTACTTTGATGCTGATGGGAACTTTGTAGAATATGTTAGAGAAAAGGAAGTCAAGGATGCATGGCTTGACAGTATTGAAAAAAATCCAATGTATATGGGACGATCTGCTGCAAATGATACTGAGATGGATGATGATAGTGGGAACGAAAAAGCAGGGGATGACCTTTCTCAAGATGAAATCGGAGTTAGAAAGAGGCGCATTGCTAATGTCCTTGAACCAGGAGAAACGGTCTTGCGAGCTTTAAGGAGGTTGAAAGGGAATTCGAATAATCGCAAGGAGAAGATGACATCTGAGACCAAGCTTATCTTTGATCAGCTTACTGAGGATGCGGACAAGCTTATCGAGAACGGCGACTACAATGTTTATCATGAGGAGCAAGAAGTTTTCCAACGTGAAGCAGAAGGATATGAGAGACTAGCTCAAGCGAAAGAAAATGGGACTGCCAATATAGTATCTTGTGATATGTTTGGCGATGATGAGAATGCTCCTGAACCTTCCTCTGATCTACAACCGTCTAGCTCCATCTCGGGCACTCAGCTTAATTCTGATTATGTGTTTGATGAATCTTCAGGGTACTACTACAGCAGCAGCCTTGGTTACTATTATGACCCGAACACTGGACTTTACTGCTACGCAACAACCGGAAAATGGTACAGGTACGATGAAGAGACTAAGGAATATAAAGAGGTGGTTTCTGAAGTTGCTACTGAAGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

40.3

Weight (kDa)

4.5

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 293 - 340 3.4e-16 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 148, 151, 665
AclWI GGATC 3 cut(s) 30, 286, 299
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 2 cut(s) 888, 1053
AfaI GTAC 4 cut(s) 87, 911, 989, 995
AfiI CCNNNNNNNGG 2 cut(s) 953, 984
AgsI TTSAA 4 cut(s) 302, 413, 551, 589
AjnI CCWGG 1 cut(s) 553
Alw26I GTCTC 4 cut(s) 248, 623, 742, 998
AlwI GGATC 3 cut(s) 30, 286, 299
Ama87I CYCGRG 1 cut(s) 862
ApeKI GCWGC 4 cut(s) 167, 443, 921, 924
ApoI RAATTY 1 cut(s) 595
AseI ATTAAT 1 cut(s) 240
AspLEI GCGC 1 cut(s) 534
AsuII TTCGAA 1 cut(s) 599
AvaI CYCGRG 1 cut(s) 862
BaeGI GKGCMC 1 cut(s) 869
BamHI GGATCC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 154, 430, 933, 936
BccI CCATC 5 cut(s) 263, 281, 344, 454, 866
BceAI ACGGC 1 cut(s) 700
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 646
BcoDI GTCTC 4 cut(s) 248, 623, 742, 998
BfaI CTAG 2 cut(s) 752, 852
BfmI CTRYAG 1 cut(s) 916
BisI GCNGC 5 cut(s) 151, 168, 444, 922, 925
BlsI GCNGC 5 cut(s) 152, 169, 445, 923, 926
Bme1390I CCNGG 1 cut(s) 555
BmeT110I CYCGRG 1 cut(s) 862
BmiI GGNNCC 2 cut(s) 26, 293
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 4 cut(s) 154, 334, 382, 652
BplI GAGNNNNNCTC 2 cut(s) 739, 771
Bpu10I CCTNAGC 2 cut(s) 171, 249
Bpu14I TTCGAA 1 cut(s) 599
BpuEI CTTGAG 2 cut(s) 489, 741
BsaBI GATNNNNATC 2 cut(s) 240, 273
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 1 cut(s) 928
BsaWI WCCGGW 1 cut(s) 977
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 953, 984
Bse1I ACTGG 1 cut(s) 958
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 2 cut(s) 240, 273
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 928
BseGI GGATG 5 cut(s) 271, 397, 469, 499, 667
BseJI GATNNNNATC 2 cut(s) 240, 273
BseLI CCNNNNNNNGG 2 cut(s) 953, 984
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 5 cut(s) 263, 447, 618, 648, 884
BseNI ACTGG 1 cut(s) 958
BseRI GAGGAG 2 cut(s) 34, 722
BseSI GKGCMC 1 cut(s) 869
BseXI GCAGC 4 cut(s) 154, 430, 933, 936
BsiHKCI CYCGRG 1 cut(s) 862
BsiSI CCGG 1 cut(s) 978
BslFI GGGAC 2 cut(s) 447, 787
BslI CCNNNNNNNGG 2 cut(s) 953, 984
BsmAI GTCTC 4 cut(s) 248, 623, 742, 998
BsmFI GGGAC 2 cut(s) 447, 787
BsmI GAATGC 1 cut(s) 823
Bso31I GGTCTC 1 cut(s) 623
BsoBI CYCGRG 1 cut(s) 862
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 869
Bsp143I GATC 5 cut(s) 35, 291, 437, 646, 838
BspACI CCGC 3 cut(s) 148, 151, 665
BspCNI CTCAG 5 cut(s) 262, 448, 619, 649, 883
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 26, 293
BspPI GGATC 3 cut(s) 30, 286, 299
BspT104I TTCGAA 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 1 cut(s) 958
BssECI CCNNGG 1 cut(s) 928
BssMI GATC 5 cut(s) 35, 291, 437, 646, 838
BssT1I CCWWGG 1 cut(s) 928
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 5 cut(s) 90, 230, 407, 565, 849
Bst6I CTCTTC 1 cut(s) 996
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 148, 180, 573
BstF5I GGATG 5 cut(s) 271, 397, 469, 499, 667
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 5 cut(s) 38, 294, 440, 649, 841
BstMAI GTCTC 4 cut(s) 248, 623, 742, 998
BstMBI GATC 5 cut(s) 35, 291, 437, 646, 838
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 916
BstSLI GKGCMC 1 cut(s) 869
BstV1I GCAGC 4 cut(s) 154, 430, 933, 936
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 822
BtsCI GGATG 5 cut(s) 271, 397, 469, 499, 667
BtsIMutI CAGTG 2 cut(s) 235, 951
Cac8I GCNNGC 3 cut(s) 148, 180, 573
CciI TCATGA 1 cut(s) 703
CfoI GCGC 1 cut(s) 534
Csp6I GTAC 4 cut(s) 86, 910, 988, 994
CviAII CATG 2 cut(s) 396, 704
CviQI GTAC 4 cut(s) 86, 910, 988, 994
DpnI GATC 5 cut(s) 37, 293, 439, 648, 840
DpnII GATC 5 cut(s) 35, 291, 437, 646, 838
Eam1104I CTCTTC 1 cut(s) 996
EarI CTCTTC 1 cut(s) 996
Eco130I CCWWGG 1 cut(s) 928
Eco31I GGTCTC 1 cut(s) 623
Eco57I CTGAAG 2 cut(s) 888, 1053
Eco88I CYCGRG 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 928
EcoT22I ATGCAT 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 928
FaeI CATG 2 cut(s) 399, 707
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FaqI GGGAC 2 cut(s) 447, 787
FatI CATG 2 cut(s) 395, 703
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 1 cut(s) 646
Fnu4HI GCNGC 5 cut(s) 151, 168, 444, 922, 925
FokI GGATG 5 cut(s) 278, 404, 476, 506, 674
Fsp4HI GCNGC 5 cut(s) 151, 168, 444, 922, 925
FspBI CTAG 2 cut(s) 752, 852
GlaI GCGC 1 cut(s) 533
GluI GCNGC 5 cut(s) 151, 168, 444, 922, 925
HapII CCGG 1 cut(s) 978
HhaI GCGC 1 cut(s) 534
Hin1II CATG 2 cut(s) 399, 707
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HindIII AAGCTT 4 cut(s) 138, 303, 635, 671
HinfI GANTC 3 cut(s) 56, 187, 899
HpaII CCGG 1 cut(s) 978
Hpy188I TCNGA 7 cut(s) 61, 198, 518, 628, 838, 883, 1033
Hpy188III TCNNGA 8 cut(s) 74, 251, 295, 314, 506, 679, 704, 824
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 4 cut(s) 49, 326, 731, 840
HpyCH4III ACNGT 5 cut(s) 90, 230, 407, 565, 849
HpyCH4IV ACGT 1 cut(s) 727
HpyCH4V TGCA 3 cut(s) 182, 395, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 727
Hsp92II CATG 2 cut(s) 399, 707
HspAI GCGC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 5 cut(s) 35, 291, 437, 646, 838
LmnI GCTCC 4 cut(s) 175, 709, 826, 860
Lsp1109I GCAGC 4 cut(s) 154, 430, 933, 936
LweI GCATC 4 cut(s) 154, 334, 382, 652
MaeI CTAG 2 cut(s) 752, 852
MaeII ACGT 1 cut(s) 727
MaeIII GTNAC 2 cut(s) 335, 932
MalI GATC 5 cut(s) 37, 293, 439, 648, 840
MboI GATC 5 cut(s) 35, 291, 437, 646, 838
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 869
MluCI AATT 2 cut(s) 595, 877
MmeI TCCRAC 1 cut(s) 748
Mph1103I ATGCAT 1 cut(s) 397
MseI TTAA 5 cut(s) 30, 240, 578, 876, 1054
MspI CCGG 1 cut(s) 978
MspR9I CCNGG 1 cut(s) 555
Mva1269I GAATGC 1 cut(s) 823
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 5 cut(s) 35, 291, 437, 646, 838
NlaIII CATG 2 cut(s) 399, 707
NlaIV GGNNCC 2 cut(s) 26, 293
NsiI ATGCAT 1 cut(s) 397
NspV TTCGAA 1 cut(s) 599
PagI TCATGA 1 cut(s) 703
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PctI GAATGC 1 cut(s) 823
PfeI GAWTC 3 cut(s) 56, 187, 899
PkrI GCNGC 5 cut(s) 152, 169, 445, 923, 926
PshBI ATTAAT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 2 cut(s) 26, 293
PsrI GAACNNNNNNTAC 2 cut(s) 674, 706
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 4 cut(s) 87, 911, 989, 995
RsaNI GTAC 4 cut(s) 86, 910, 988, 994
SaqAI TTAA 5 cut(s) 30, 240, 578, 876, 1054
SatI GCNGC 5 cut(s) 151, 168, 444, 922, 925
Sau3AI GATC 5 cut(s) 35, 291, 437, 646, 838
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 1 cut(s) 869
SfaNI GCATC 4 cut(s) 154, 334, 382, 652
SfcI CTRYAG 1 cut(s) 916
SfuI TTCGAA 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 504, 756
SmoI CTYRAG 2 cut(s) 504, 756
Sse9I AATT 2 cut(s) 595, 877
SsiI CCGC 3 cut(s) 148, 151, 665
SspMI CTAG 2 cut(s) 752, 852
StyD4I CCNGG 1 cut(s) 553
StyI CCWWGG 1 cut(s) 928
TaaI ACNGT 5 cut(s) 90, 230, 407, 565, 849
TaiI ACGT 1 cut(s) 730
TaqI TCGA 5 cut(s) 17, 110, 219, 599, 678
TasI AATT 2 cut(s) 595, 877
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 3 cut(s) 56, 187, 899
Tru1I TTAA 5 cut(s) 30, 240, 578, 876, 1054
Tru9I TTAA 5 cut(s) 30, 240, 578, 876, 1054
TscAI CASTG 2 cut(s) 235, 958
TseI GCWGC 4 cut(s) 167, 443, 921, 924
TspDTI ATGAA 4 cut(s) 66, 525, 912, 1014
TspRI CASTG 2 cut(s) 235, 958
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 1 cut(s) 595
XspI CTAG 2 cut(s) 752, 852
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.