RLG00000004434

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003252
Physical Location & Seq
Reverse (-)
59344338 .. 59345504
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004434

Sequence Viewer

Length: 1167 bp
ATGTCACGCTCCAATCTGAAACGCTCCTTCGAAGACGACGACATGGCCGGAAAGCTTCCGCCGGCGAAGAAGGTTAGGTTTCCGAAGGGGAAGAAGGTGAAGCCGGAAGACGAACAAGCCAGAGTCGGTGGCGGTGGCGATGCGATCGGTCCGACGCCGCAGACGGACCCTAGCCTCGCCGCGAAAGAGCGCGCGAAGCGCCGCAGCAGCCAAATCTCCGAGCTCTGCAAGGACGACGACGCCTCCGCCGCTGAGGTCAGTTACCGGGGACCGGACTACGAGAACTTCGTCGAGGACGGCGTTCAGTTTGAGCCGTTTAACTTGGAGAAGGAGAGAGAAGAAGGCTATTTTGATGCGGATGGGAATTTTGTGGAGTATGTGGACAAGAATCAAGTGAAGGATGCTTGGCTTGATAGCATCACCAAAGCTGTTGATCCAGAAACGACGAAGAAATTCGCTGAGAAAAACGGTGGTGGTGGTGGTGGTGGTGAAGGTGATGATGAAGTTGGTCAGGATTTGAGTTCCGATGAGATTGGGAAGATTAAGAGGCGGATTGCTGATGTGCTGGAGCCGGAGGAGACTGTGTTGCAGGCTCTGAGGAGGCTGAAGGGGAACAAGAAGGAGAAGATGTCGGCGGAGACGAAGGCGGTGTTTGATCAGTTGACTGAGGATGCTATGGCGTTGATGATGAAGAATGGGGAGAACAATGTGTATGATGAGGAGAAGGAGGTTTTCGAGAGGGAGGCGCAGGGGTATGAGAGTTTGGCTAAGGCGAGAATGGGGGGAGGGAAGTCGATATTGGAGGAGCTCGAAACTGATGCGGGGACGTCGAATTCGATTGCGTCCATTGGTGGTGGTGGTGGTGGTGGTGGTGTGGCTGATGATGATGCATTCGATATGTTTGGGGATGATGATGAGCCTGCAGTTGTGGCGAATGCTGCTGCGCCGGGTTTGGAGAATAATGGTGGAGGATTGGGGAATGATTATGTGTTTGATGATGCTTCTGGGTACTATTATAGTCACAGCTTGGGGTACTATTATGATCCAACTACAGGGTTGTATTGCTCAGCTGCTTCGGGGTTGTGGTACTCGTACAATGAGGAGACTGGGGCATATGATGAAGTCGCACACCAGGCACCTGAGGCGGCCGCCGCTGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

41.73

Weight (kDa)

4.41

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 327 - 375 4.3e-17 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 830
AccB1I GGYRCC 1 cut(s) 1135
AccII CGCG 3 cut(s) 182, 192, 194
AclWI GGATC 2 cut(s) 428, 1037
AcoI YGGCCR 2 cut(s) 45, 1146
AcsI RAATTY 3 cut(s) 364, 452, 832
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 3 cut(s) 155, 240, 827
AfaI GTAC 4 cut(s) 1010, 1034, 1088, 1094
AfiI CCNNNNNNNGG 2 cut(s) 271, 1052
AjnI CCWGG 1 cut(s) 1131
AjuI GAANNNNNNNTTGG 2 cut(s) 782, 814
AluBI AGCT 6 cut(s) 55, 223, 428, 808, 1026, 1070
AluI AGCT 6 cut(s) 55, 223, 428, 808, 1026, 1070
Alw21I GWGCWC 2 cut(s) 225, 810
Alw26I GTCTC 3 cut(s) 572, 632, 1097
AlwI GGATC 2 cut(s) 428, 1037
AlwNI CAGNNNCTG 1 cut(s) 595
AoxI GGCC 2 cut(s) 45, 1146
ApeKI GCWGC 6 cut(s) 204, 207, 938, 941, 1070, 1154
ApoI RAATTY 3 cut(s) 364, 452, 832
ArsI GACNNNNNNTTYG 2 cut(s) 817, 849
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 5 cut(s) 192, 194, 201, 748, 946
AspS9I GGNCC 3 cut(s) 149, 166, 269
AsuC2I CCSGG 2 cut(s) 266, 948
AsuHPI GGTGA 4 cut(s) 109, 412, 500, 506
AsuII TTCGAA 1 cut(s) 30
AvaII GGWCC 3 cut(s) 149, 166, 269
AxyI CCTNAGG 1 cut(s) 1140
BanI GGYRCC 1 cut(s) 1135
BanII GRGCYC 2 cut(s) 225, 810
BbsI GAAGAC 2 cut(s) 39, 114
Bbv12I GWGCWC 2 cut(s) 225, 810
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 6 cut(s) 216, 219, 925, 928, 1057, 1141
BccI CCATC 1 cut(s) 353
BceAI ACGGC 2 cut(s) 298, 313
BcgI CGANNNNNNTGC 2 cut(s) 800, 834
BciT130I CCWGG 1 cut(s) 1133
BclI TGATCA 1 cut(s) 655
BcnI CCSGG 2 cut(s) 266, 948
BcoDI GTCTC 3 cut(s) 572, 632, 1097
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 2 cut(s) 921, 1050
BfoI RGCGCY 1 cut(s) 202
BlpI GCTNAGC 1 cut(s) 1066
Bme1390I CCNGG 3 cut(s) 266, 948, 1133
Bme18I GGWCC 3 cut(s) 149, 166, 269
BmgT120I GGNCC 3 cut(s) 149, 166, 269
BmiI GGNNCC 4 cut(s) 168, 270, 570, 1137
BmrFI CCNGG 3 cut(s) 266, 948, 1133
BmrI ACTGGG 1 cut(s) 1116
BmsI GCATC 8 cut(s) 130, 343, 391, 426, 661, 808, 877, 988
BmuI ACTGGG 1 cut(s) 1116
BpiI GAAGAC 2 cut(s) 39, 114
BpmI CTGGAG 1 cut(s) 587
Bpu10I CCTNAGC 2 cut(s) 252, 768
Bpu1102I GCTNAGC 1 cut(s) 1066
Bpu14I TTCGAA 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 266, 948
BsaHI GRCGYC 3 cut(s) 155, 240, 827
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 6 cut(s) 227, 257, 569, 599, 614, 644
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 1052
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 1111
Bse21I CCTNAGG 1 cut(s) 1140
BseBI CCWGG 1 cut(s) 1133
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 4 cut(s) 364, 406, 676, 913
BseLI CCNNNNNNNGG 2 cut(s) 271, 1052
BseMII CTCAG 6 cut(s) 243, 450, 587, 657, 1080, 1131
BseNI ACTGG 1 cut(s) 1111
BsePI GCGCGC 1 cut(s) 190
BseRI GAGGAG 5 cut(s) 590, 613, 734, 818, 1115
BseX3I CGGCCG 1 cut(s) 1146
BseXI GCAGC 6 cut(s) 216, 219, 925, 928, 1057, 1141
Bsh1236I CGCG 3 cut(s) 182, 192, 194
Bsh1285I CGRYCG 2 cut(s) 147, 1149
BshFI GGCC 2 cut(s) 47, 1148
BshNI GGYRCC 1 cut(s) 1135
BsiEI CGRYCG 2 cut(s) 147, 1149
BsiHKAI GWGCWC 2 cut(s) 225, 810
BsiSI CCGG 7 cut(s) 48, 62, 104, 265, 272, 572, 947
BslFI GGGAC 2 cut(s) 282, 838
BslI CCNNNNNNNGG 2 cut(s) 271, 1052
BsmAI GTCTC 3 cut(s) 572, 632, 1097
BsmBI CGTCTC 1 cut(s) 632
BsmFI GGGAC 2 cut(s) 282, 838
BsmI GAATGC 2 cut(s) 890, 940
BsnI GGCC 2 cut(s) 47, 1148
Bsp119I TTCGAA 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 225, 810
Bsp143I GATC 4 cut(s) 144, 433, 655, 1042
Bsp1720I GCTNAGC 1 cut(s) 1066
BspANI GGCC 2 cut(s) 47, 1148
BspCNI CTCAG 6 cut(s) 244, 451, 588, 658, 1079, 1132
BspFNI CGCG 3 cut(s) 182, 192, 194
BspLI GGNNCC 4 cut(s) 168, 270, 570, 1137
BspMAI CTGCAG 1 cut(s) 925
BspPI GGATC 2 cut(s) 428, 1037
BspT104I TTCGAA 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 1135
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 1 cut(s) 1111
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 265
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 4 cut(s) 144, 433, 655, 1042
BssNI GRCGYC 3 cut(s) 155, 240, 827
Bst2UI CCWGG 1 cut(s) 1133
Bst4CI ACNGT 2 cut(s) 470, 583
BstACI GRCGYC 3 cut(s) 155, 240, 827
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 4 cut(s) 63, 192, 591, 921
BstDEI CTNAG 7 cut(s) 252, 459, 596, 666, 768, 1066, 1140
BstF5I GGATG 4 cut(s) 364, 406, 676, 913
BstFNI CGCG 3 cut(s) 182, 192, 194
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 5 cut(s) 192, 194, 201, 748, 946
BstKTI GATC 4 cut(s) 147, 436, 658, 1045
BstMAI GTCTC 3 cut(s) 572, 632, 1097
BstMBI GATC 4 cut(s) 144, 433, 655, 1042
BstMCI CGRYCG 2 cut(s) 147, 1149
BstNI CCWGG 1 cut(s) 1133
BstSCI CCNGG 3 cut(s) 264, 946, 1131
BstSFI CTRYAG 2 cut(s) 921, 1050
BstUI CGCG 3 cut(s) 182, 192, 194
BstV1I GCAGC 6 cut(s) 216, 219, 925, 928, 1057, 1141
BstV2I GAAGAC 2 cut(s) 39, 114
BstZI CGGCCG 1 cut(s) 1146
Bsu36I CCTNAGG 1 cut(s) 1140
BsuRI GGCC 2 cut(s) 47, 1148
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 4 cut(s) 364, 406, 676, 913
Cac8I GCNNGC 4 cut(s) 63, 192, 591, 921
CaiI CAGNNNCTG 1 cut(s) 595
CciNI GCGGCCGC 1 cut(s) 1146
CfoI GCGC 5 cut(s) 192, 194, 201, 748, 946
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 149, 166, 269
CpoI CGGWCCG 1 cut(s) 149
CseI GACGC 3 cut(s) 163, 248, 831
Csp6I GTAC 4 cut(s) 1009, 1033, 1087, 1093
CspI CGGWCCG 1 cut(s) 149
CviAII CATG 1 cut(s) 43
CviQI GTAC 4 cut(s) 1009, 1033, 1087, 1093
DdeI CTNAG 7 cut(s) 252, 459, 596, 666, 768, 1066, 1140
DpnI GATC 4 cut(s) 146, 435, 657, 1044
DpnII GATC 4 cut(s) 144, 433, 655, 1042
EaeI YGGCCR 2 cut(s) 45, 1146
EagI CGGCCG 1 cut(s) 1146
EciI GGCGGA 4 cut(s) 48, 235, 565, 650
Ecl136II GAGCTC 2 cut(s) 223, 808
EclXI CGGCCG 1 cut(s) 1146
Eco24I GRGCYC 2 cut(s) 225, 810
Eco47I GGWCC 3 cut(s) 149, 166, 269
Eco52I CGGCCG 1 cut(s) 1146
Eco53kI GAGCTC 2 cut(s) 223, 808
Eco57I CTGAAG 1 cut(s) 626
Eco81I CCTNAGG 1 cut(s) 1140
EcoICRI GAGCTC 2 cut(s) 223, 808
EcoRI GAATTC 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 1131
EcoT22I ATGCAT 1 cut(s) 892
EcoT38I GRGCYC 2 cut(s) 225, 810
Esp3I CGTCTC 1 cut(s) 632
FaeI CATG 1 cut(s) 46
FaqI GGGAC 2 cut(s) 282, 838
FatI CATG 1 cut(s) 42
FauI CCCGC 1 cut(s) 814
FauNDI CATATG 1 cut(s) 1114
FbaI TGATCA 1 cut(s) 655
FokI GGATG 4 cut(s) 371, 413, 683, 920
FriOI GRGCYC 2 cut(s) 225, 810
FspBI CTAG 1 cut(s) 171
GlaI GCGC 5 cut(s) 191, 193, 200, 747, 945
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 2 cut(s) 47, 1148
HapII CCGG 7 cut(s) 48, 62, 104, 265, 272, 572, 947
HgaI GACGC 3 cut(s) 163, 248, 831
HhaI GCGC 5 cut(s) 192, 194, 201, 748, 946
Hin1I GRCGYC 3 cut(s) 155, 240, 827
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 5 cut(s) 190, 192, 199, 746, 944
HinP1I GCGC 5 cut(s) 190, 192, 199, 746, 944
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 123, 388
HpaII CCGG 7 cut(s) 48, 62, 104, 265, 272, 572, 947
HphI GGTGA 4 cut(s) 109, 412, 500, 506
Hpy166II GTNNAC 2 cut(s) 382, 663
Hpy188I TCNGA 6 cut(s) 18, 84, 153, 220, 526, 597
Hpy188III TCNNGA 3 cut(s) 437, 512, 736
Hpy8I GTNNAC 2 cut(s) 382, 663
Hpy99I CGWCG 7 cut(s) 41, 157, 239, 242, 293, 448, 832
HpyCH4III ACNGT 2 cut(s) 470, 583
HpyCH4IV ACGT 1 cut(s) 827
HpyCH4V TGCA 4 cut(s) 228, 589, 890, 923
HpyF3I CTNAG 7 cut(s) 252, 459, 596, 666, 768, 1066, 1140
HpySE526I ACGT 1 cut(s) 827
Hsp92I GRCGYC 3 cut(s) 155, 240, 827
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 5 cut(s) 190, 192, 199, 746, 944
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 4 cut(s) 144, 433, 655, 1042
LmnI GCTCC 4 cut(s) 14, 29, 568, 805
Lsp1109I GCAGC 6 cut(s) 216, 219, 925, 928, 1057, 1141
LweI GCATC 8 cut(s) 130, 343, 391, 426, 661, 808, 877, 988
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 827
MaeIII GTNAC 3 cut(s) 3, 260, 1019
MalI GATC 4 cut(s) 146, 435, 657, 1044
MboI GATC 4 cut(s) 144, 433, 655, 1042
MboII GAAGA 9 cut(s) 44, 79, 103, 119, 350, 460, 550, 637, 703
MhlI GDGCHC 2 cut(s) 225, 810
MluCI AATT 4 cut(s) 364, 452, 832, 1162
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 2 cut(s) 176, 1070
Mph1103I ATGCAT 1 cut(s) 892
MreI CGCCGGCG 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 2 cut(s) 318, 543
MspA1I CMGCKG 3 cut(s) 251, 1070, 1154
MspI CCGG 7 cut(s) 48, 62, 104, 265, 272, 572, 947
MspR9I CCNGG 3 cut(s) 266, 948, 1133
Mva1269I GAATGC 2 cut(s) 890, 940
MvaI CCWGG 1 cut(s) 1133
MvnI CGCG 3 cut(s) 182, 192, 194
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 2 cut(s) 266, 948
NdeI CATATG 1 cut(s) 1114
NdeII GATC 4 cut(s) 144, 433, 655, 1042
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 4 cut(s) 168, 270, 570, 1137
NmuCI GTSAC 2 cut(s) 3, 1019
NotI GCGGCCGC 1 cut(s) 1146
NsiI ATGCAT 1 cut(s) 892
NspV TTCGAA 1 cut(s) 30
PauI GCGCGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 5 cut(s) 36, 285, 297, 638, 833
PctI GAATGC 2 cut(s) 890, 940
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 388
Ple19I CGATCG 1 cut(s) 147
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp124BI GAGCTC 2 cut(s) 225, 810
Psp6I CCWGG 1 cut(s) 1131
PspGI CCWGG 1 cut(s) 1131
PspN4I GGNNCC 4 cut(s) 168, 270, 570, 1137
PspPI GGNCC 3 cut(s) 149, 166, 269
PstI CTGCAG 1 cut(s) 925
PstNI CAGNNNCTG 1 cut(s) 595
PteI GCGCGC 1 cut(s) 190
PvuI CGATCG 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 1070
RsaI GTAC 4 cut(s) 1010, 1034, 1088, 1094
RsaNI GTAC 4 cut(s) 1009, 1033, 1087, 1093
Rsr2I CGGWCCG 1 cut(s) 149
RsrII CGGWCCG 1 cut(s) 149
SacI GAGCTC 2 cut(s) 225, 810
SaqAI TTAA 2 cut(s) 318, 543
Sau3AI GATC 4 cut(s) 144, 433, 655, 1042
Sau96I GGNCC 3 cut(s) 149, 166, 269
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 266, 948, 1133
SduI GDGCHC 2 cut(s) 225, 810
SfaNI GCATC 8 cut(s) 130, 343, 391, 426, 661, 808, 877, 988
SfcI CTRYAG 2 cut(s) 921, 1050
SfuI TTCGAA 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 61
SinI GGWCC 3 cut(s) 149, 166, 269
Sse9I AATT 4 cut(s) 364, 452, 832, 1162
SspMI CTAG 1 cut(s) 171
SstI GAGCTC 2 cut(s) 225, 810
StyD4I CCNGG 3 cut(s) 264, 946, 1131
TaaI ACNGT 2 cut(s) 470, 583
TaiI ACGT 1 cut(s) 830
TaqI TCGA 8 cut(s) 30, 291, 735, 794, 810, 830, 836, 894
TaqII GACCGA 1 cut(s) 137
TasI AATT 4 cut(s) 364, 452, 832, 1162
TauI GCSGC 7 cut(s) 160, 182, 204, 251, 1148, 1151, 1154
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 318, 543
Tru9I TTAA 2 cut(s) 318, 543
TseFI GTSAC 2 cut(s) 3, 1019
TseI GCWGC 6 cut(s) 204, 207, 938, 941, 1070, 1154
Tsp45I GTSAC 2 cut(s) 3, 1019
TspDTI ATGAA 3 cut(s) 516, 704, 1134
TspGWI ACGGA 1 cut(s) 179
VpaK11BI GGWCC 3 cut(s) 149, 166, 269
XapI RAATTY 3 cut(s) 364, 452, 832
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 1 cut(s) 171
ZraI GACGTC 1 cut(s) 828
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.