Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003252

Physical Location & Seq

Genomic Coordinates Reverse (-)

4296873 .. 4302242

Gene Structure 5370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03760.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAAGGCAATCGGAATTTGAAACGTCCCTTCTTCGAAGACGACAGCTCCGGCAAACCTCCGGCGCAAAAGAGGGTTCGGTTCCCTAAGGGGAAGAAGGCGAGGCCGGAAGATGAAGCGGCACTCAAATCCATACCTGTGGAGGCCATTGGGCCGACTCCGGCGGCGGCGACGGACCCTCGGGCCGCCGCCAAAGAGCGTGCCAAGCGCCGCAGCCAAATCACAACTGAGCTCTTCACTGAAGACGCTGCAGGCGTTCTCAGCGATGTCTCTGCTGCTGAAGTTACTTACAAGGATTACGAGGACTTTGTTGAGGATGGGATTCGAATAGAACCTTTCAACTTGAACAAGGAGAGGGAAGAAGGTTATTTTGATGCAAATGGAAATTTTGTTGAATATGCCAATAAAAATGAAGTCAAGGATGCATGGCTTGATAGTGTTGAAGTTGTTACAAAATATGCCGGAAAAGACATTGTAGTAACAAAAGACTATGATGATGTCCAAGATTTATCTTCTGATGACATTGGGAAGATAAAAAGACGTATTGCTGATGTGCTTGAACCAGGAGAAACGGTTCTACACGCTTTGAGAAGATTGAAGGGAACACCTAAAAACAAGAAGGAGAAGATGTCAGCTGAAACGAAGATAGTATTTGACCAGTTAACTGAAGATGCCATGAACCTGATGGATAACGGTGAATCCAATGTTTATCATGAGAAGAAGGAGATTTTTGAGCGTGAGGCAGAAGGATATGAGAGTTTAGCACGGGCAAGAAGGGAACCCACATCTATTAGTGCATATCAAGAGAGATCTGTTCTCGGCATGGAGTGGGAGTCCTCTGATGTAACAAATCCTGGAGCACCCTCTTCAATACTGCCGGAAACTTCTGTGGCTACATCCAGTTCTAATGCAACCACTGTAGAAATCTCAAGTAATGGTGATGATGCATTTGATATGTTTGCAGAAGATGATGAACATGCAATTGCTAAACCTTCTGAAGGAAGTAATGTGATTTCTGACCCTAATTCTTATTGCGTCAGCTCACCGTCATCAAACAACCTAAACAATTATTCAGAGAATGGAGTTTTGCAAAATGATTATGTGTTTGATGAGTCTTCTGGGTACTATTATAGCAGCAGTTTGGGATATTATTATGACCCATCTACAGGACTCTATTGCTCTGCTTCATCAGGGCTATGGTACTCATTCAATGAGGAAACTGGTGTATATGATGAGATTCACCAGACTACAACCACTGTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

46.71

Weight (kDa)

4.56

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09390 AT5G09390
fragaria_vesca	FvH4_4g13240 FvH4_5g07000
malus_domestica	MD05G1045100.v1.1 MD14G1166200.v1.1
prunus_persica	Prupe.5G160300_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1
pyrus_communis	pycom05g03760
rosa_chinensis	RchiOBHm_Chr7g0191681 RchiOBHm_Chr7g0224681
rosa_laevigata	RLG00000002642 RLG00000004434
rosa_multiflora	Rmu_sc0001123.1_g000011 Rmu_sc0018746.1_g000005 Rmu_sc0032119.1_g000001 Rmu_sc0035406.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438520 Rroxscaffold_3G00263650
rosa_rugosa	Rorug06G0510900
rosa_samantha	Rh7AG120100 Rh7AG377800 Rh7BG122200 Rh7CG124800 Rh7CG397000 Rh7DG123000
rosa_wichuraiana	Rw7G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	119, 164, 167, 186, 189, 211
AcsI	RAATTY	2 cut(s)	16, 385
AcuI	CTGAAG	4 cut(s)	261, 300, 687, 1017
AfaI	GTAC	2 cut(s)	1124, 1202
AfiI	CCNNNNNNNGG	2 cut(s)	998, 1166
AgsI	TTSAA	9 cut(s)	22, 340, 346, 395, 443, 560, 598, 870, 1210
AjnI	CCWGG	2 cut(s)	562, 853
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	4 cut(s)	48, 232, 635, 1041
AluI	AGCT	4 cut(s)	48, 232, 635, 1041
Alw21I	GWGCWC	2 cut(s)	234, 862
Alw26I	GTCTC	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	4 cut(s)	104, 144, 152, 183
ApeKI	GCWGC	4 cut(s)	213, 248, 275, 1134
ApoI	RAATTY	2 cut(s)	16, 385
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	67, 210
AspS9I	GGNCC	3 cut(s)	152, 175, 183
AsuHPI	GGTGA	4 cut(s)	707, 950, 1035, 1232
AsuII	TTCGAA	2 cut(s)	36, 325
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	3 cut(s)	45, 249, 1107
Bbv12I	GWGCWC	2 cut(s)	234, 862
BbvI	GCAGC	4 cut(s)	225, 235, 262, 1146
BccI	CCATC	3 cut(s)	311, 679, 1168
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	2 cut(s)	564, 855
BcoDI	GTCTC	1 cut(s)	274
BfmI	CTRYAG	3 cut(s)	249, 918, 1164
BfoI	RGCGCY	1 cut(s)	211
BglII	AGATCT	1 cut(s)	809
Bme1390I	CCNGG	2 cut(s)	564, 855
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	3 cut(s)	152, 175, 183
BmiI	GGNNCC	3 cut(s)	83, 177, 780
BmrFI	CCNGG	2 cut(s)	564, 855
BmsI	GCATC	4 cut(s)	364, 412, 661, 934
BpiI	GAAGAC	3 cut(s)	45, 249, 1107
BpmI	CTGGAG	1 cut(s)	876
Bpu14I	TTCGAA	2 cut(s)	36, 325
BpuEI	CTTGAG	1 cut(s)	913
BsaJI	CCNNGG	1 cut(s)	179
BsaXI	ACNNNNNCTCC	8 cut(s)	32, 62, 558, 588, 614, 644, 818, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	998, 1166
Bse1I	ACTGG	3 cut(s)	658, 900, 1225
Bse21I	CCTNAGG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	564, 855
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	3 cut(s)	322, 427, 896
BseLI	CCNNNNNNNGG	2 cut(s)	998, 1166
BseMII	CTCAG	2 cut(s)	219, 274
BseNI	ACTGG	3 cut(s)	658, 900, 1225
BseXI	GCAGC	4 cut(s)	225, 235, 262, 1146
BshFI	GGCC	4 cut(s)	106, 146, 154, 185
BsiHKAI	GWGCWC	2 cut(s)	234, 862
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	6 cut(s)	51, 62, 107, 161, 462, 878
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	998, 1166
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	4 cut(s)	106, 146, 154, 185
BsoBI	CYCGRG	1 cut(s)	180
Bsp119I	TTCGAA	2 cut(s)	36, 325
Bsp1286I	GDGCHC	2 cut(s)	234, 862
Bsp143I	GATC	1 cut(s)	809
BspACI	CCGC	6 cut(s)	119, 164, 167, 186, 189, 211
BspANI	GGCC	4 cut(s)	106, 146, 154, 185
BspCNI	CTCAG	2 cut(s)	220, 273
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	83, 177, 780
BspMAI	CTGCAG	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	239
BspT104I	TTCGAA	2 cut(s)	36, 325
BsrI	ACTGG	3 cut(s)	658, 900, 1225
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	809
Bst2UI	CCWGG	2 cut(s)	564, 855
Bst4CI	ACNGT	5 cut(s)	574, 695, 919, 1047, 1258
Bst6I	CTCTTC	2 cut(s)	239, 871
BstBI	TTCGAA	2 cut(s)	36, 325
BstC8I	GCNNGC	2 cut(s)	201, 253
BstDEI	CTNAG	3 cut(s)	87, 228, 260
BstENI	CCTNNNNNAGG	1 cut(s)	996
BstF5I	GGATG	3 cut(s)	322, 427, 896
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	67, 210
BstKTI	GATC	1 cut(s)	812
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	809
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 261
BstNI	CCWGG	2 cut(s)	564, 855
BstNSI	RCATGY	1 cut(s)	980
BstSCI	CCNGG	2 cut(s)	562, 853
BstSFI	CTRYAG	3 cut(s)	249, 918, 1164
BstV1I	GCAGC	4 cut(s)	225, 235, 262, 1146
BstV2I	GAAGAC	3 cut(s)	45, 249, 1107
BstX2I	RGATCY	1 cut(s)	809
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	809
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	4 cut(s)	106, 146, 154, 185
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	322, 427, 896
BtsIMutI	CAGTG	3 cut(s)	237, 915, 1254
Cac8I	GCNNGC	2 cut(s)	201, 253
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	2 cut(s)	67, 210
Cfr13I	GGNCC	3 cut(s)	152, 175, 183
CseI	GACGC	2 cut(s)	254, 1024
Csp6I	GTAC	2 cut(s)	1123, 1201
CviAII	CATG	5 cut(s)	426, 676, 713, 823, 977
CviQI	GTAC	2 cut(s)	1123, 1201
DdeI	CTNAG	3 cut(s)	87, 228, 260
DpnI	GATC	1 cut(s)	811
DpnII	GATC	1 cut(s)	809
Eam1104I	CTCTTC	2 cut(s)	239, 871
EarI	CTCTTC	2 cut(s)	239, 871
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	4 cut(s)	261, 300, 687, 1017
Eco81I	CCTNAGG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	232
EcoNI	CCTNNNNNAGG	1 cut(s)	996
EcoRII	CCWGG	2 cut(s)	562, 853
EcoT22I	ATGCAT	2 cut(s)	427, 949
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	5 cut(s)	429, 679, 716, 826, 980
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	5 cut(s)	425, 675, 712, 822, 976
FokI	GGATG	3 cut(s)	329, 434, 883
FriOI	GRGCYC	1 cut(s)	234
GlaI	GCGC	2 cut(s)	66, 209
GsuI	CTGGAG	1 cut(s)	876
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	4 cut(s)	106, 146, 154, 185
HapII	CCGG	6 cut(s)	51, 62, 107, 161, 462, 878
HgaI	GACGC	2 cut(s)	254, 1024
HhaI	GCGC	2 cut(s)	67, 210
Hin1II	CATG	5 cut(s)	429, 679, 716, 826, 980
Hin6I	GCGC	2 cut(s)	65, 208
HinP1I	GCGC	2 cut(s)	65, 208
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HinfI	GANTC	7 cut(s)	157, 322, 698, 833, 1112, 1170, 1237
HpaI	GTTAAC	1 cut(s)	663
HpaII	CCGG	6 cut(s)	51, 62, 107, 161, 462, 878
HphI	GGTGA	4 cut(s)	707, 950, 1035, 1232
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	6 cut(s)	15, 517, 841, 997, 1018, 1075
Hpy188III	TCNNGA	2 cut(s)	713, 803
Hpy8I	GTNNAC	1 cut(s)	663
Hpy99I	CGWCG	1 cut(s)	175
HpyCH4III	ACNGT	5 cut(s)	574, 695, 919, 1047, 1258
HpyCH4IV	ACGT	2 cut(s)	25, 541
HpyCH4V	TGCA	9 cut(s)	251, 377, 425, 797, 911, 947, 962, 980, 1090
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 261
HpyF3I	CTNAG	3 cut(s)	87, 228, 260
HpySE526I	ACGT	2 cut(s)	25, 541
Hsp92II	CATG	5 cut(s)	429, 679, 716, 826, 980
HspAI	GCGC	2 cut(s)	65, 208
KspAI	GTTAAC	1 cut(s)	663
Kzo9I	GATC	1 cut(s)	809
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	2 cut(s)	53, 857
Lsp1109I	GCAGC	4 cut(s)	225, 235, 262, 1146
LweI	GCATC	4 cut(s)	364, 412, 661, 934
MaeII	ACGT	2 cut(s)	25, 541
MaeIII	GTNAC	4 cut(s)	283, 448, 478, 844
MalI	GATC	1 cut(s)	811
MboI	GATC	1 cut(s)	809
MfeI	CAATTG	1 cut(s)	981
MflI	RGATCY	1 cut(s)	809
MhlI	GDGCHC	2 cut(s)	234, 862
MluCI	AATT	5 cut(s)	16, 385, 981, 1024, 1066
MlyI	GAGTC	4 cut(s)	151, 842, 1121, 1164
Mph1103I	ATGCAT	2 cut(s)	427, 949
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	6 cut(s)	51, 62, 107, 161, 462, 878
MspR9I	CCNGG	2 cut(s)	564, 855
MunI	CAATTG	1 cut(s)	981
MvaI	CCWGG	2 cut(s)	564, 855
MwoI	GCNNNNNNNGC	2 cut(s)	205, 261
NdeII	GATC	1 cut(s)	809
NlaIII	CATG	5 cut(s)	429, 679, 716, 826, 980
NlaIV	GGNNCC	3 cut(s)	83, 177, 780
NmeAIII	GCCGAG	1 cut(s)	798
NsiI	ATGCAT	2 cut(s)	427, 949
NspI	RCATGY	1 cut(s)	980
NspV	TTCGAA	2 cut(s)	36, 325
PagI	TCATGA	1 cut(s)	712
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	3 cut(s)	322, 698, 1237
PfoI	TCCNGGA	1 cut(s)	853
PleI	GAGTC	4 cut(s)	151, 841, 1120, 1164
PpsI	GAGTC	4 cut(s)	151, 841, 1120, 1164
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	562, 853
PspGI	CCWGG	2 cut(s)	562, 853
PspN4I	GGNNCC	3 cut(s)	83, 177, 780
PspPI	GGNCC	3 cut(s)	152, 175, 183
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	809
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	1124, 1202
RsaNI	GTAC	2 cut(s)	1123, 1201
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	662
Sau3AI	GATC	1 cut(s)	809
Sau96I	GGNCC	3 cut(s)	152, 175, 183
SchI	GAGTC	4 cut(s)	151, 842, 1121, 1164
ScrFI	CCNGG	2 cut(s)	564, 855
SduI	GDGCHC	2 cut(s)	234, 862
SfaNI	GCATC	4 cut(s)	364, 412, 661, 934
SfcI	CTRYAG	3 cut(s)	249, 918, 1164
SfuI	TTCGAA	2 cut(s)	36, 325
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
Sse9I	AATT	5 cut(s)	16, 385, 981, 1024, 1066
SsiI	CCGC	6 cut(s)	119, 164, 167, 186, 189, 211
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	562, 853
TaaI	ACNGT	5 cut(s)	574, 695, 919, 1047, 1258
TaiI	ACGT	2 cut(s)	28, 544
TaqI	TCGA	2 cut(s)	36, 325
TasI	AATT	5 cut(s)	16, 385, 981, 1024, 1066
TauI	GCSGC	6 cut(s)	122, 167, 170, 188, 191, 213
TfiI	GAWTC	3 cut(s)	322, 698, 1237
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	3 cut(s)	244, 922, 1261
TseI	GCWGC	4 cut(s)	213, 248, 275, 1134
TspDTI	ATGAA	5 cut(s)	129, 426, 692, 987, 1176
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	3 cut(s)	244, 922, 1261
VpaK11BI	GGWCC	1 cut(s)	175
XagI	CCTNNNNNAGG	1 cut(s)	996
XapI	RAATTY	2 cut(s)	16, 385
XceI	RCATGY	1 cut(s)	980
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XmnI	GAANNNNTTC	1 cut(s)	573
Zsp2I	ATGCAT	2 cut(s)	427, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.