Rroxscaffold_157G00438520

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000157
OG0003252
Physical Location & Seq
Forward (+)
148157 .. 149323
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_157G00438520.1

Sequence Viewer

Length: 1167 bp
ATGTCACGCTCCAATCTGAAACGCTCCTTCGAAGACGACGACATGGCCGGAAAGCCTCCGCCGGCGAAGAAGGTTAGGTTTCCGAAGGGGAAGAAGGTGAAGCCGGAAGACGAACAAGCCAGAGTCGGTGGCGGTGGCGGTGGCGATGCGATCGGTCCGACGCCGCAGACGGACCCTAGCCTCGCCGCGAAAGAGCGCGCGAAGCGCCGCAGCAGCCAAATCTCCGAGCTCTGCAAGGACGACGACGCCTCCGCCGCTGAGGTCAGTTACCGGGGACTGGACTACGACAACTTCGTCGAGGACGGCGTTCAGTTTGAGCCGTTTAACTTGGAGAAGGAGAGAGAAGAAGGCTATTTTGATGCGGATGGGAATTTTGTGGAGTATGTGGAGAAGAATAAAGTGAAGGATGCTTGGCTTGATAGCATCACCAAAGCTGTTGATCCAGAAACGACGAAGAAATTCGCTGAGAAAAACGGTGGTGGTGGTGAAGGTGAAGGTGATGATGAAGTAGGTCAGGATTTGAGTTCCGATGAGATTGGGAAGATTAAGAGGCGGATTGCGGATGTGCTGGAGCCTGAGGAGACTGTTTTGCAAGCTCTGAGGAGGCTGAAGGGGAACAAGAAGGAGAAGATGTCAGCGGAGACGAAGGCGGTGTTTGATCAGTTGACTGAGGATGCTATGGTGTTGATGATGAAGAATGGGGAGAACAATGTGTATGATGAGGAGAAGGAGGTTTTCGAGAGGGAGGCGCAGGGGTATGAGAGTTTGGCTAAGGCGAGAATGGGGGAAGGGAAGTCGATATTGGAGGAGCTCGAAACTGATGCTGGGACGTCGAATTCGATTGCGTCCATTGGTGGTGGTGGTGGTGGTGGTGTGGCTGATGATGATGCATTCGATATGTTTGGGGATGATGATGAGCCTGCAGTTGTGGCGAATGCTGCTGCGCCGGGTTTGGAGAATAATGGTGGAGGATTGGGGAATGATTATGTGTTTGATGATGCTTCTGGGTACTATTATAGCCACAGCTTGGGGTACTATTATGATCCAACTACAGGGTTGTATTGCTCAGCTGCTTCGGGGTTGTGGTACTCGTACAATGAGGAGACTGGGGCATATGATGAAGTCGCACACCAGGCACCTGAGGCTGCCGCCGCTGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

41.9

Weight (kDa)

4.41

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 327 - 375 4.3e-17 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 1 cut(s) 833
AccB1I GGYRCC 1 cut(s) 1135
AccB7I CCANNNNNTGG 1 cut(s) 1027
AccII CGCG 3 cut(s) 188, 198, 200
AclWI GGATC 2 cut(s) 434, 1037
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 3 cut(s) 370, 458, 835
AcuI CTGAAG 1 cut(s) 629
AcyI GRCGYC 3 cut(s) 161, 246, 830
AfaI GTAC 4 cut(s) 1010, 1034, 1088, 1094
AfiI CCNNNNNNNGG 3 cut(s) 277, 1027, 1052
AjnI CCWGG 1 cut(s) 1131
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AluBI AGCT 6 cut(s) 229, 434, 596, 811, 1026, 1070
AluI AGCT 6 cut(s) 229, 434, 596, 811, 1026, 1070
Alw21I GWGCWC 2 cut(s) 231, 813
Alw26I GTCTC 3 cut(s) 575, 635, 1097
AlwI GGATC 2 cut(s) 434, 1037
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 7 cut(s) 210, 213, 938, 941, 1070, 1145, 1154
ApoI RAATTY 3 cut(s) 370, 458, 835
ArsI GACNNNNNNTTYG 2 cut(s) 820, 852
Asp700I GAANNNNTTC 1 cut(s) 458
AspLEI GCGC 5 cut(s) 198, 200, 207, 751, 946
AspS9I GGNCC 2 cut(s) 155, 172
AsuC2I CCSGG 2 cut(s) 272, 948
AsuHPI GGTGA 5 cut(s) 109, 418, 497, 503, 509
AsuII TTCGAA 1 cut(s) 30
AvaII GGWCC 2 cut(s) 155, 172
AxyI CCTNAGG 2 cut(s) 576, 1140
BanI GGYRCC 1 cut(s) 1135
BanII GRGCYC 2 cut(s) 231, 813
BbsI GAAGAC 2 cut(s) 39, 114
Bbv12I GWGCWC 2 cut(s) 231, 813
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 7 cut(s) 222, 225, 925, 928, 1057, 1132, 1141
BccI CCATC 1 cut(s) 359
BceAI ACGGC 2 cut(s) 304, 319
BcgI CGANNNNNNTGC 2 cut(s) 803, 837
BciT130I CCWGG 1 cut(s) 1133
BclI TGATCA 1 cut(s) 658
BcnI CCSGG 2 cut(s) 272, 948
BcoDI GTCTC 3 cut(s) 575, 635, 1097
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 2 cut(s) 921, 1050
BfoI RGCGCY 1 cut(s) 208
BlpI GCTNAGC 1 cut(s) 1066
Bme1390I CCNGG 3 cut(s) 272, 948, 1133
Bme18I GGWCC 2 cut(s) 155, 172
BmgT120I GGNCC 2 cut(s) 155, 172
BmiI GGNNCC 3 cut(s) 174, 573, 1137
BmrFI CCNGG 3 cut(s) 272, 948, 1133
BmrI ACTGGG 1 cut(s) 1116
BmsI GCATC 8 cut(s) 136, 349, 397, 432, 664, 811, 877, 988
BmuI ACTGGG 1 cut(s) 1116
BpiI GAAGAC 2 cut(s) 39, 114
BpmI CTGGAG 1 cut(s) 590
Bpu10I CCTNAGC 2 cut(s) 258, 771
Bpu1102I GCTNAGC 1 cut(s) 1066
Bpu14I TTCGAA 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 272, 948
BsaHI GRCGYC 3 cut(s) 161, 246, 830
BsaJI CCNNGG 1 cut(s) 271
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 617, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 1027, 1052
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 282, 1111
Bse21I CCTNAGG 2 cut(s) 576, 1140
BseBI CCWGG 1 cut(s) 1133
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 5 cut(s) 370, 412, 568, 679, 913
BseLI CCNNNNNNNGG 3 cut(s) 277, 1027, 1052
BseMII CTCAG 7 cut(s) 249, 456, 567, 590, 660, 1080, 1131
BseNI ACTGG 2 cut(s) 282, 1111
BsePI GCGCGC 1 cut(s) 196
BseRI GAGGAG 5 cut(s) 593, 616, 737, 821, 1115
BseXI GCAGC 7 cut(s) 222, 225, 925, 928, 1057, 1132, 1141
BseYI CCCAGC 1 cut(s) 824
Bsh1236I CGCG 3 cut(s) 188, 198, 200
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 1135
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 231, 813
BsiSI CCGG 5 cut(s) 48, 62, 104, 271, 947
BslFI GGGAC 2 cut(s) 288, 841
BslI CCNNNNNNNGG 3 cut(s) 277, 1027, 1052
BsmAI GTCTC 3 cut(s) 575, 635, 1097
BsmBI CGTCTC 1 cut(s) 635
BsmFI GGGAC 2 cut(s) 288, 841
BsmI GAATGC 2 cut(s) 890, 940
BsnI GGCC 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 231, 813
Bsp143I GATC 4 cut(s) 150, 439, 658, 1042
Bsp1720I GCTNAGC 1 cut(s) 1066
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 7 cut(s) 250, 457, 568, 591, 661, 1079, 1132
BspFNI CGCG 3 cut(s) 188, 198, 200
BspLI GGNNCC 3 cut(s) 174, 573, 1137
BspMAI CTGCAG 1 cut(s) 925
BspPI GGATC 2 cut(s) 434, 1037
BspT104I TTCGAA 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 1135
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 282, 1111
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 271
BssHII GCGCGC 1 cut(s) 196
BssMI GATC 4 cut(s) 150, 439, 658, 1042
BssNI GRCGYC 3 cut(s) 161, 246, 830
Bst2UI CCWGG 1 cut(s) 1133
Bst4CI ACNGT 2 cut(s) 476, 586
BstACI GRCGYC 3 cut(s) 161, 246, 830
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 4 cut(s) 63, 198, 594, 921
BstDEI CTNAG 8 cut(s) 258, 465, 576, 599, 669, 771, 1066, 1140
BstF5I GGATG 5 cut(s) 370, 412, 568, 679, 913
BstFNI CGCG 3 cut(s) 188, 198, 200
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 5 cut(s) 198, 200, 207, 751, 946
BstKTI GATC 4 cut(s) 153, 442, 661, 1045
BstMAI GTCTC 3 cut(s) 575, 635, 1097
BstMBI GATC 4 cut(s) 150, 439, 658, 1042
BstMCI CGRYCG 1 cut(s) 153
BstNI CCWGG 1 cut(s) 1133
BstSCI CCNGG 3 cut(s) 270, 946, 1131
BstSFI CTRYAG 2 cut(s) 921, 1050
BstUI CGCG 3 cut(s) 188, 198, 200
BstV1I GCAGC 7 cut(s) 222, 225, 925, 928, 1057, 1132, 1141
BstV2I GAAGAC 2 cut(s) 39, 114
Bsu36I CCTNAGG 2 cut(s) 576, 1140
BsuRI GGCC 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 5 cut(s) 370, 412, 568, 679, 913
Cac8I GCNNGC 4 cut(s) 63, 198, 594, 921
CfoI GCGC 5 cut(s) 198, 200, 207, 751, 946
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 155, 172
CpoI CGGWCCG 1 cut(s) 155
CseI GACGC 3 cut(s) 169, 254, 834
Csp6I GTAC 4 cut(s) 1009, 1033, 1087, 1093
CspI CGGWCCG 1 cut(s) 155
CviAII CATG 1 cut(s) 43
CviQI GTAC 4 cut(s) 1009, 1033, 1087, 1093
DdeI CTNAG 8 cut(s) 258, 465, 576, 599, 669, 771, 1066, 1140
DpnI GATC 4 cut(s) 152, 441, 660, 1044
DpnII GATC 4 cut(s) 150, 439, 658, 1042
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 45
EciI GGCGGA 3 cut(s) 48, 241, 568
Ecl136II GAGCTC 2 cut(s) 229, 811
Eco24I GRGCYC 2 cut(s) 231, 813
Eco47I GGWCC 2 cut(s) 155, 172
Eco53kI GAGCTC 2 cut(s) 229, 811
Eco57I CTGAAG 1 cut(s) 629
Eco81I CCTNAGG 2 cut(s) 576, 1140
EcoICRI GAGCTC 2 cut(s) 229, 811
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 1 cut(s) 1131
EcoT22I ATGCAT 1 cut(s) 892
EcoT38I GRGCYC 2 cut(s) 231, 813
Esp3I CGTCTC 1 cut(s) 635
FaeI CATG 1 cut(s) 46
FaqI GGGAC 2 cut(s) 288, 841
FatI CATG 1 cut(s) 42
FauNDI CATATG 1 cut(s) 1114
FbaI TGATCA 1 cut(s) 658
FokI GGATG 5 cut(s) 377, 419, 575, 686, 920
FriOI GRGCYC 2 cut(s) 231, 813
FspBI CTAG 1 cut(s) 177
GlaI GCGC 5 cut(s) 197, 199, 206, 750, 945
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 1 cut(s) 590
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 48, 62, 104, 271, 947
HgaI GACGC 3 cut(s) 169, 254, 834
HhaI GCGC 5 cut(s) 198, 200, 207, 751, 946
Hin1I GRCGYC 3 cut(s) 161, 246, 830
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 5 cut(s) 196, 198, 205, 749, 944
HinP1I GCGC 5 cut(s) 196, 198, 205, 749, 944
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HinfI GANTC 1 cut(s) 123
HpaII CCGG 5 cut(s) 48, 62, 104, 271, 947
HphI GGTGA 5 cut(s) 109, 418, 497, 503, 509
Hpy166II GTNNAC 1 cut(s) 666
Hpy188I TCNGA 6 cut(s) 18, 84, 159, 226, 529, 600
Hpy188III TCNNGA 3 cut(s) 443, 515, 739
Hpy8I GTNNAC 1 cut(s) 666
Hpy99I CGWCG 7 cut(s) 41, 163, 245, 248, 299, 454, 835
HpyCH4III ACNGT 2 cut(s) 476, 586
HpyCH4IV ACGT 1 cut(s) 830
HpyCH4V TGCA 4 cut(s) 234, 592, 890, 923
HpyF3I CTNAG 8 cut(s) 258, 465, 576, 599, 669, 771, 1066, 1140
HpySE526I ACGT 1 cut(s) 830
Hsp92I GRCGYC 3 cut(s) 161, 246, 830
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 5 cut(s) 196, 198, 205, 749, 944
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 4 cut(s) 150, 439, 658, 1042
LmnI GCTCC 4 cut(s) 14, 29, 571, 808
Lsp1109I GCAGC 7 cut(s) 222, 225, 925, 928, 1057, 1132, 1141
LweI GCATC 8 cut(s) 136, 349, 397, 432, 664, 811, 877, 988
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 830
MaeIII GTNAC 2 cut(s) 3, 266
MalI GATC 4 cut(s) 152, 441, 660, 1044
MboI GATC 4 cut(s) 150, 439, 658, 1042
MhlI GDGCHC 2 cut(s) 231, 813
MluCI AATT 4 cut(s) 370, 458, 835, 1162
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 2 cut(s) 182, 1070
Mph1103I ATGCAT 1 cut(s) 892
MreI CGCCGGCG 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 458
MseI TTAA 2 cut(s) 324, 546
MspA1I CMGCKG 4 cut(s) 257, 638, 1070, 1154
MspI CCGG 5 cut(s) 48, 62, 104, 271, 947
MspR9I CCNGG 3 cut(s) 272, 948, 1133
Mva1269I GAATGC 2 cut(s) 890, 940
MvaI CCWGG 1 cut(s) 1133
MvnI CGCG 3 cut(s) 188, 198, 200
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 2 cut(s) 272, 948
NdeI CATATG 1 cut(s) 1114
NdeII GATC 4 cut(s) 150, 439, 658, 1042
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 3 cut(s) 174, 573, 1137
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 892
NspV TTCGAA 1 cut(s) 30
PauI GCGCGC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 4 cut(s) 36, 291, 303, 836
PctI GAATGC 2 cut(s) 890, 940
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 458
PflMI CCANNNNNTGG 1 cut(s) 1027
Ple19I CGATCG 1 cut(s) 153
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp124BI GAGCTC 2 cut(s) 231, 813
Psp6I CCWGG 1 cut(s) 1131
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 1 cut(s) 1131
PspN4I GGNNCC 3 cut(s) 174, 573, 1137
PspPI GGNCC 2 cut(s) 155, 172
PstI CTGCAG 1 cut(s) 925
PteI GCGCGC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 1070
RsaI GTAC 4 cut(s) 1010, 1034, 1088, 1094
RsaNI GTAC 4 cut(s) 1009, 1033, 1087, 1093
Rsr2I CGGWCCG 1 cut(s) 155
RsrII CGGWCCG 1 cut(s) 155
SacI GAGCTC 2 cut(s) 231, 813
SaqAI TTAA 2 cut(s) 324, 546
Sau3AI GATC 4 cut(s) 150, 439, 658, 1042
Sau96I GGNCC 2 cut(s) 155, 172
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 272, 948, 1133
SduI GDGCHC 2 cut(s) 231, 813
SfaNI GCATC 8 cut(s) 136, 349, 397, 432, 664, 811, 877, 988
SfcI CTRYAG 2 cut(s) 921, 1050
SfuI TTCGAA 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 61
SinI GGWCC 2 cut(s) 155, 172
Sse9I AATT 4 cut(s) 370, 458, 835, 1162
SspMI CTAG 1 cut(s) 177
SstI GAGCTC 2 cut(s) 231, 813
StyD4I CCNGG 3 cut(s) 270, 946, 1131
TaaI ACNGT 2 cut(s) 476, 586
TaiI ACGT 1 cut(s) 833
TaqI TCGA 8 cut(s) 30, 297, 738, 797, 813, 833, 839, 894
TaqII GACCGA 1 cut(s) 143
TasI AATT 4 cut(s) 370, 458, 835, 1162
TauI GCSGC 6 cut(s) 166, 188, 210, 257, 1151, 1154
Tru1I TTAA 2 cut(s) 324, 546
Tru9I TTAA 2 cut(s) 324, 546
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 7 cut(s) 210, 213, 938, 941, 1070, 1145, 1154
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 519, 707, 1134
TspGWI ACGGA 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 1027
VpaK11BI GGWCC 2 cut(s) 155, 172
XapI RAATTY 3 cut(s) 370, 458, 835
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 1 cut(s) 177
ZraI GACGTC 1 cut(s) 831
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.