Rw7G010240

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003252
Physical Location & Seq
Forward (+)
9524497 .. 9525651
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010240.1

Sequence Viewer

Length: 1068 bp
ATGTCACGCTCCAATCTGAAACGCTCCTTCGAAGACGACGACATGGCCGGAAAGCCTCCGCCGGCGAAGAAGGTTAGATTTCCAAAGGGGAAGAAGGTGAAGCCGGAAGACGAACAAGCCAGAGTCGGTGGCGGTGGCGATGCTATCGCAGCCAAATCTCCGAGCTCTGCAAGGACGACGACGCCTCCTGCTGAGGTCAGTTACCGGGGACTGGACTACGAGAACTTCGTCGAGGACGGCGTTCAGTTTGAGCCGTTTAACTTGGAGAAGGAGAGAGAAGAAGGCTATTTTGATGCGGATGGGAATTTTGTGGAGTATGTGGAGAAGAATCAAGTGAAGGATGCTTGGCTTGATAGCATCACCAAAGCTGTTGATCCAGAAACGACGAAGAAATTCGCTGAGAAAAACGGTGGTGGGGGTGAAGGTGAAGGTGATGATGAAGTTGATCAGGATTTGAGTTCCGATGAGATTGGGAAGATTAAGAGGCGGATTGCGGATGTGCTGGAGCCGGAGGAGACTGTGTTGCAGGCTCTGAGGAGGCTGAAGGGGAACAAGAAGGAGAAGATGTCGGCGGAGACGAAGGCGGTGTTTGATCAGTTGACTGAGGATGCTATGGTGTTGATGATGAAGAATGGGGAGAATAATGTGTATGATGAGGAGAAGGAGGTTTTCGAGAGGGAGGCGCAGGGGTATGAGAGTTTGGCTAAGGCGAGAATGGGGGGAGGGAAGTCGATATTGGAGGAGCTCGAAACTGATGCTGGGACGTCGAATTCGATTGCATCCATTGGTGGTGGTGGCGGTGGTGGTGTGGCTGATGATGATGCATTCGATATGTTTGGGGATGATGAAGAGCCTGCAAATAATGGTGGAGGATTGGGGAATGATTATGTATTTGATGATGCTTCTGGGTACTATTATAGCCACAGCTTGGGGTACTATTATGATCCAACTACAGGGTTGTATTGCTCAGCTGCTTCAGGGTTGTGGTACTCGTACAATGAGGAGACTGGGGCATATGATGAAGTTGCACACCAGGCACCTGAGGCTGCCGCCGCTGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

38.55

Weight (kDa)

4.4

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 294 - 342 3.8e-17 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 928
AclWI GGATC 2 cut(s) 368, 938
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 3 cut(s) 304, 392, 769
AcuI CTGAAG 2 cut(s) 563, 960
AcyI GRCGYC 2 cut(s) 182, 764
AfaI GTAC 4 cut(s) 911, 935, 989, 995
AfiI CCNNNNNNNGG 3 cut(s) 211, 928, 953
AjnI CCWGG 1 cut(s) 1032
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AluBI AGCT 5 cut(s) 165, 368, 745, 927, 971
AluI AGCT 5 cut(s) 165, 368, 745, 927, 971
Alw21I GWGCWC 2 cut(s) 167, 747
Alw26I GTCTC 3 cut(s) 509, 569, 998
AlwI GGATC 2 cut(s) 368, 938
AlwNI CAGNNNCTG 1 cut(s) 532
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 4 cut(s) 149, 971, 1046, 1055
ApoI RAATTY 3 cut(s) 304, 392, 769
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 1 cut(s) 685
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 5 cut(s) 109, 352, 431, 437, 443
AsuII TTCGAA 1 cut(s) 30
AxyI CCTNAGG 1 cut(s) 1041
BanI GGYRCC 1 cut(s) 1036
BanII GRGCYC 2 cut(s) 167, 747
BbsI GAAGAC 2 cut(s) 39, 114
Bbv12I GWGCWC 2 cut(s) 167, 747
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 4 cut(s) 161, 958, 1033, 1042
BccI CCATC 1 cut(s) 293
BceAI ACGGC 2 cut(s) 238, 253
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BciT130I CCWGG 1 cut(s) 1034
BclI TGATCA 2 cut(s) 445, 592
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 3 cut(s) 509, 569, 998
BfmI CTRYAG 1 cut(s) 951
BisI GCNGC 6 cut(s) 150, 972, 1047, 1050, 1053, 1056
BlpI GCTNAGC 1 cut(s) 967
BlsI GCNGC 6 cut(s) 151, 973, 1048, 1051, 1054, 1057
Bme1390I CCNGG 2 cut(s) 206, 1034
BmiI GGNNCC 2 cut(s) 507, 1038
BmrFI CCNGG 2 cut(s) 206, 1034
BmrI ACTGGG 1 cut(s) 1017
BmsI GCATC 9 cut(s) 130, 283, 331, 366, 598, 745, 788, 811, 889
BmuI ACTGGG 1 cut(s) 1017
BpiI GAAGAC 2 cut(s) 39, 114
BpmI CTGGAG 1 cut(s) 524
Bpu10I CCTNAGC 2 cut(s) 192, 705
Bpu1102I GCTNAGC 1 cut(s) 967
Bpu14I TTCGAA 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 206
BsaHI GRCGYC 2 cut(s) 182, 764
BsaJI CCNNGG 1 cut(s) 205
BsaXI ACNNNNNCTCC 6 cut(s) 169, 199, 506, 536, 551, 581
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 928, 953
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 216, 1012
Bse21I CCTNAGG 1 cut(s) 1041
BseBI CCWGG 1 cut(s) 1034
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 6 cut(s) 304, 346, 502, 613, 779, 847
BseLI CCNNNNNNNGG 3 cut(s) 211, 928, 953
BseMII CTCAG 6 cut(s) 183, 390, 524, 594, 981, 1032
BseNI ACTGG 2 cut(s) 216, 1012
BseRI GAGGAG 5 cut(s) 527, 550, 671, 755, 1016
BseXI GCAGC 4 cut(s) 161, 958, 1033, 1042
BseYI CCCAGC 1 cut(s) 758
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 1036
BsiHKAI GWGCWC 2 cut(s) 167, 747
BsiSI CCGG 5 cut(s) 48, 62, 104, 205, 509
BslFI GGGAC 2 cut(s) 222, 775
BslI CCNNNNNNNGG 3 cut(s) 211, 928, 953
BsmAI GTCTC 3 cut(s) 509, 569, 998
BsmBI CGTCTC 1 cut(s) 569
BsmFI GGGAC 2 cut(s) 222, 775
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 167, 747
Bsp143I GATC 4 cut(s) 373, 445, 592, 943
Bsp1720I GCTNAGC 1 cut(s) 967
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 6 cut(s) 184, 391, 525, 595, 980, 1033
BspLI GGNNCC 2 cut(s) 507, 1038
BspPI GGATC 2 cut(s) 368, 938
BspQI GCTCTTC 1 cut(s) 843
BspT104I TTCGAA 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 1036
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 216, 1012
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 4 cut(s) 373, 445, 592, 943
BssNI GRCGYC 2 cut(s) 182, 764
Bst2UI CCWGG 1 cut(s) 1034
Bst4CI ACNGT 2 cut(s) 410, 520
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 2 cut(s) 182, 764
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 3 cut(s) 63, 528, 855
BstDEI CTNAG 7 cut(s) 192, 399, 533, 603, 705, 967, 1041
BstF5I GGATG 6 cut(s) 304, 346, 502, 613, 779, 847
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 4 cut(s) 376, 448, 595, 946
BstMAI GTCTC 3 cut(s) 509, 569, 998
BstMBI GATC 4 cut(s) 373, 445, 592, 943
BstMWI GCNNNNNNNGC 5 cut(s) 149, 1034, 1043, 1052, 1055
BstNI CCWGG 1 cut(s) 1034
BstSCI CCNGG 2 cut(s) 204, 1032
BstSFI CTRYAG 1 cut(s) 951
BstV1I GCAGC 4 cut(s) 161, 958, 1033, 1042
BstV2I GAAGAC 2 cut(s) 39, 114
Bsu36I CCTNAGG 1 cut(s) 1041
BsuRI GGCC 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 6 cut(s) 304, 346, 502, 613, 779, 847
Cac8I GCNNGC 3 cut(s) 63, 528, 855
CaiI CAGNNNCTG 1 cut(s) 532
CfoI GCGC 1 cut(s) 685
Cfr10I RCCGGY 1 cut(s) 61
CseI GACGC 1 cut(s) 190
Csp6I GTAC 4 cut(s) 910, 934, 988, 994
CviAII CATG 1 cut(s) 43
CviQI GTAC 4 cut(s) 910, 934, 988, 994
DdeI CTNAG 7 cut(s) 192, 399, 533, 603, 705, 967, 1041
DpnI GATC 4 cut(s) 375, 447, 594, 945
DpnII GATC 4 cut(s) 373, 445, 592, 943
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
EciI GGCGGA 3 cut(s) 48, 502, 587
Ecl136II GAGCTC 2 cut(s) 165, 745
Eco24I GRGCYC 2 cut(s) 167, 747
Eco53kI GAGCTC 2 cut(s) 165, 745
Eco57I CTGAAG 2 cut(s) 563, 960
Eco81I CCTNAGG 1 cut(s) 1041
EcoICRI GAGCTC 2 cut(s) 165, 745
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 1 cut(s) 1032
EcoT22I ATGCAT 1 cut(s) 826
EcoT38I GRGCYC 2 cut(s) 167, 747
Esp3I CGTCTC 1 cut(s) 569
FaeI CATG 1 cut(s) 46
FaqI GGGAC 2 cut(s) 222, 775
FatI CATG 1 cut(s) 42
FauNDI CATATG 1 cut(s) 1015
FbaI TGATCA 2 cut(s) 445, 592
Fnu4HI GCNGC 6 cut(s) 150, 972, 1047, 1050, 1053, 1056
FokI GGATG 6 cut(s) 311, 353, 509, 620, 766, 854
FriOI GRGCYC 2 cut(s) 167, 747
Fsp4HI GCNGC 6 cut(s) 150, 972, 1047, 1050, 1053, 1056
GlaI GCGC 1 cut(s) 684
GluI GCNGC 6 cut(s) 150, 972, 1047, 1050, 1053, 1056
GsaI CCCAGC 1 cut(s) 762
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 48, 62, 104, 205, 509
HgaI GACGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 685
Hin1I GRCGYC 2 cut(s) 182, 764
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 2 cut(s) 123, 328
HpaII CCGG 5 cut(s) 48, 62, 104, 205, 509
HphI GGTGA 5 cut(s) 109, 352, 431, 437, 443
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 4 cut(s) 18, 162, 463, 534
Hpy188III TCNNGA 3 cut(s) 377, 449, 673
Hpy8I GTNNAC 1 cut(s) 600
Hpy99I CGWCG 6 cut(s) 41, 181, 184, 233, 388, 769
HpyCH4III ACNGT 2 cut(s) 410, 520
HpyCH4IV ACGT 1 cut(s) 764
HpyCH4V TGCA 6 cut(s) 170, 526, 779, 824, 857, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 1034, 1043, 1052, 1055
HpyF3I CTNAG 7 cut(s) 192, 399, 533, 603, 705, 967, 1041
HpySE526I ACGT 1 cut(s) 764
Hsp92I GRCGYC 2 cut(s) 182, 764
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 683
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 2 cut(s) 445, 592
Kzo9I GATC 4 cut(s) 373, 445, 592, 943
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 4 cut(s) 14, 29, 505, 742
Lsp1109I GCAGC 4 cut(s) 161, 958, 1033, 1042
LweI GCATC 9 cut(s) 130, 283, 331, 366, 598, 745, 788, 811, 889
MaeII ACGT 1 cut(s) 764
MaeIII GTNAC 2 cut(s) 3, 200
MalI GATC 4 cut(s) 375, 447, 594, 945
MboI GATC 4 cut(s) 373, 445, 592, 943
MhlI GDGCHC 2 cut(s) 167, 747
MluCI AATT 4 cut(s) 304, 392, 769, 1063
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 971
Mph1103I ATGCAT 1 cut(s) 826
MreI CGCCGGCG 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 2 cut(s) 258, 480
MspA1I CMGCKG 2 cut(s) 971, 1055
MspI CCGG 5 cut(s) 48, 62, 104, 205, 509
MspR9I CCNGG 2 cut(s) 206, 1034
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 1 cut(s) 1034
MwoI GCNNNNNNNGC 5 cut(s) 149, 1034, 1043, 1052, 1055
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 1 cut(s) 206
NdeI CATATG 1 cut(s) 1015
NdeII GATC 4 cut(s) 373, 445, 592, 943
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 507, 1038
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 826
NspV TTCGAA 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 5 cut(s) 36, 225, 237, 575, 770
PctI GAATGC 1 cut(s) 824
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 328
PflMI CCANNNNNTGG 1 cut(s) 928
PkrI GCNGC 6 cut(s) 151, 973, 1048, 1051, 1054, 1057
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp124BI GAGCTC 2 cut(s) 167, 747
Psp6I CCWGG 1 cut(s) 1032
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 1 cut(s) 1032
PspN4I GGNNCC 2 cut(s) 507, 1038
PstNI CAGNNNCTG 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 4 cut(s) 911, 935, 989, 995
RsaNI GTAC 4 cut(s) 910, 934, 988, 994
SacI GAGCTC 2 cut(s) 167, 747
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 2 cut(s) 258, 480
SatI GCNGC 6 cut(s) 150, 972, 1047, 1050, 1053, 1056
Sau3AI GATC 4 cut(s) 373, 445, 592, 943
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 2 cut(s) 206, 1034
SduI GDGCHC 2 cut(s) 167, 747
SfaNI GCATC 9 cut(s) 130, 283, 331, 366, 598, 745, 788, 811, 889
SfcI CTRYAG 1 cut(s) 951
SfuI TTCGAA 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 61
Sse9I AATT 4 cut(s) 304, 392, 769, 1063
SstI GAGCTC 2 cut(s) 167, 747
StyD4I CCNGG 2 cut(s) 204, 1032
TaaI ACNGT 2 cut(s) 410, 520
TaiI ACGT 1 cut(s) 767
TaqI TCGA 8 cut(s) 30, 231, 672, 731, 747, 767, 773, 828
TasI AATT 4 cut(s) 304, 392, 769, 1063
TauI GCSGC 2 cut(s) 1052, 1055
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 258, 480
Tru9I TTAA 2 cut(s) 258, 480
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 149, 971, 1046, 1055
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 4 cut(s) 453, 641, 861, 1035
Van91I CCANNNNNTGG 1 cut(s) 928
XapI RAATTY 3 cut(s) 304, 392, 769
XmnI GAANNNNTTC 1 cut(s) 392
ZraI GACGTC 1 cut(s) 765
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.