Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035406.1

Orthogroup ID

OG0003252

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 621

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035406.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 620 bp

atgtcacgctccaatctgaaacgctccttcgaagacgacgacatggccggaaagcctccgccggcgaagaaggttagatttccgaaggggaagaaggtgaagccggaagacgaacaagccagagtcggtggcggtggcgatgctatcggtccgacgccgcagacggacgctagcctcgctgcgaaagagcgcgcgaagcgccgcagcagccaaatctccgagctctgcaaggacgacgacgcctccgctgctgaggtcagttaccggggactggactacgagaacttcgtcgaggacggcgttcagtttgagccgtttaacttggagaaggagagagaagaaggctattttgatgcggatgggaattttgtggagtatgtggagaagaatcaagtgaaggatgcttggcttgatagcatcaccaaagctgttgatccagaaacgacgaagaaattcgctgagaaaaacggtggtggtggtgaaggtgaaggtgatgatgaagttgatcaggatttgagttccgatgagattgggaagatcaagaggcggattgcggatgtgctggagccggaggagactgtgttgcaggctctgaggaggctgaaggggaacaagaagga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.83

Weight (kDa)

4.84

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09390 AT5G09390
fragaria_vesca	FvH4_4g13240 FvH4_5g07000
malus_domestica	MD05G1045100.v1.1 MD14G1166200.v1.1
prunus_persica	Prupe.5G160300_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1
pyrus_communis	pycom05g03760
rosa_chinensis	RchiOBHm_Chr7g0191681 RchiOBHm_Chr7g0224681
rosa_laevigata	RLG00000002642 RLG00000004434
rosa_multiflora	Rmu_sc0001123.1_g000011 Rmu_sc0018746.1_g000005 Rmu_sc0032119.1_g000001 Rmu_sc0035406.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438520 Rroxscaffold_3G00263650
rosa_rugosa	Rorug06G0510900
rosa_samantha	Rh7AG120100 Rh7AG377800 Rh7BG122200 Rh7CG124800 Rh7CG397000 Rh7DG123000
rosa_wichuraiana	Rw7G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	192, 194
AciI	CCGC	8 cut(s)	59, 132, 158, 202, 246, 356, 547, 554
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	364, 452
AcyI	GRCGYC	2 cut(s)	155, 240
AfiI	CCNNNNNNNGG	1 cut(s)	271
AluBI	AGCT	2 cut(s)	223, 428
AluI	AGCT	2 cut(s)	223, 428
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	592
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	4 cut(s)	179, 204, 207, 248
ApoI	RAATTY	2 cut(s)	364, 452
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	3 cut(s)	192, 194, 201
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	5 cut(s)	109, 412, 491, 497, 503
AsuII	TTCGAA	1 cut(s)	30
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	39, 114
Bbv12I	GWGCWC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	166, 216, 219, 235
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	2 cut(s)	298, 313
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	202
BisI	GCNGC	6 cut(s)	158, 180, 202, 205, 208, 249
BlsI	GCNGC	6 cut(s)	159, 181, 203, 206, 209, 250
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	4 cut(s)	130, 343, 391, 426
BmtI	GCTAGC	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	39, 114
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	266
BsaHI	GRCGYC	2 cut(s)	155, 240
BsaJI	CCNNGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 566, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	3 cut(s)	364, 406, 562
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	3 cut(s)	243, 450, 584
BseNI	ACTGG	1 cut(s)	276
BsePI	GCGCGC	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	587, 610
BseXI	GCAGC	4 cut(s)	166, 216, 219, 235
Bsh1236I	CGCG	2 cut(s)	192, 194
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	5 cut(s)	48, 62, 104, 265, 569
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	433, 505, 537
BspACI	CCGC	8 cut(s)	59, 132, 158, 202, 246, 356, 547, 554
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	3 cut(s)	244, 451, 585
BspFNI	CGCG	2 cut(s)	192, 194
BspLI	GGNNCC	1 cut(s)	567
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	428
BspT104I	TTCGAA	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	265
BssHII	GCGCGC	1 cut(s)	190
BssMI	GATC	3 cut(s)	433, 505, 537
BssNI	GRCGYC	2 cut(s)	155, 240
Bst4CI	ACNGT	2 cut(s)	470, 580
BstACI	GRCGYC	2 cut(s)	155, 240
BstBI	TTCGAA	1 cut(s)	30
BstC8I	GCNNGC	4 cut(s)	63, 172, 192, 588
BstDEI	CTNAG	3 cut(s)	252, 459, 593
BstF5I	GGATG	3 cut(s)	364, 406, 562
BstFNI	CGCG	2 cut(s)	192, 194
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	3 cut(s)	192, 194, 201
BstKTI	GATC	3 cut(s)	436, 508, 540
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	3 cut(s)	433, 505, 537
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 196, 198, 207, 248
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	2 cut(s)	192, 194
BstV1I	GCAGC	4 cut(s)	166, 216, 219, 235
BstV2I	GAAGAC	2 cut(s)	39, 114
BsuRI	GGCC	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	364, 406, 562
Cac8I	GCNNGC	4 cut(s)	63, 172, 192, 588
CaiI	CAGNNNCTG	1 cut(s)	592
CfoI	GCGC	3 cut(s)	192, 194, 201
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	149
CpoI	CGGWCCG	1 cut(s)	149
CseI	GACGC	3 cut(s)	163, 176, 248
CspI	CGGWCCG	1 cut(s)	149
CviAII	CATG	1 cut(s)	43
DdeI	CTNAG	3 cut(s)	252, 459, 593
DpnI	GATC	3 cut(s)	435, 507, 539
DpnII	GATC	3 cut(s)	433, 505, 537
EaeI	YGGCCR	1 cut(s)	45
EciI	GGCGGA	2 cut(s)	48, 562
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 378
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	6 cut(s)	158, 180, 202, 205, 208, 249
FokI	GGATG	3 cut(s)	371, 413, 569
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	6 cut(s)	158, 180, 202, 205, 208, 249
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	3 cut(s)	191, 193, 200
GluI	GCNGC	6 cut(s)	158, 180, 202, 205, 208, 249
GsuI	CTGGAG	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	5 cut(s)	48, 62, 104, 265, 569
HgaI	GACGC	3 cut(s)	163, 176, 248
HhaI	GCGC	3 cut(s)	192, 194, 201
Hin1I	GRCGYC	2 cut(s)	155, 240
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	3 cut(s)	190, 192, 199
HinP1I	GCGC	3 cut(s)	190, 192, 199
HinfI	GANTC	2 cut(s)	123, 388
HpaII	CCGG	5 cut(s)	48, 62, 104, 265, 569
HphI	GGTGA	5 cut(s)	109, 412, 491, 497, 503
Hpy188I	TCNGA	6 cut(s)	18, 84, 153, 220, 523, 594
Hpy188III	TCNNGA	3 cut(s)	437, 509, 541
Hpy99I	CGWCG	6 cut(s)	41, 157, 239, 242, 293, 448
HpyCH4III	ACNGT	2 cut(s)	470, 580
HpyCH4V	TGCA	2 cut(s)	228, 586
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 196, 198, 207, 248
HpyF3I	CTNAG	3 cut(s)	252, 459, 593
Hsp92I	GRCGYC	2 cut(s)	155, 240
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	3 cut(s)	190, 192, 199
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	433, 505, 537
LmnI	GCTCC	3 cut(s)	14, 29, 565
Lsp1109I	GCAGC	4 cut(s)	166, 216, 219, 235
LweI	GCATC	4 cut(s)	130, 343, 391, 426
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	3, 260
MalI	GATC	3 cut(s)	435, 507, 539
MboI	GATC	3 cut(s)	433, 505, 537
MboII	GAAGA	8 cut(s)	44, 79, 103, 119, 350, 397, 460, 547
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	2 cut(s)	364, 452
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	9 cut(s)	66, 185, 247, 253, 286, 537, 565, 588, 591
MreI	CGCCGGCG	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	5 cut(s)	48, 62, 104, 265, 569
MspR9I	CCNGG	1 cut(s)	266
MvnI	CGCG	2 cut(s)	192, 194
MwoI	GCNNNNNNNGC	5 cut(s)	176, 196, 198, 207, 248
NaeI	GCCGGC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	3 cut(s)	433, 505, 537
NgoMIV	GCCGGC	1 cut(s)	61
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	1 cut(s)	3
NspV	TTCGAA	1 cut(s)	30
PauI	GCGCGC	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 285, 297
PdiI	GCCGGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	6 cut(s)	159, 181, 203, 206, 209, 250
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	592
PteI	GCGCGC	1 cut(s)	190
Rsr2I	CGGWCCG	1 cut(s)	149
RsrII	CGGWCCG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	6 cut(s)	158, 180, 202, 205, 208, 249
Sau3AI	GATC	3 cut(s)	433, 505, 537
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	7 cut(s)	75, 99, 225, 258, 430, 487, 493
SfaNI	GCATC	4 cut(s)	130, 343, 391, 426
SfuI	TTCGAA	1 cut(s)	30
SgrAI	CRCCGGYG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	364, 452
SsiI	CCGC	8 cut(s)	59, 132, 158, 202, 246, 356, 547, 554
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	470, 580
TaqI	TCGA	2 cut(s)	30, 291
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	364, 452
TauI	GCSGC	2 cut(s)	160, 204
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	4 cut(s)	179, 204, 207, 248
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	513
TspGWI	ACGGA	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	2 cut(s)	364, 452
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.