FvH4_5g07000

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003252
Physical Location & Seq
Reverse (-)
4141517 .. 4142707
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07000.t1

Sequence Viewer

Length: 1191 bp
ATGGACCGCTCCAATCTGAAACGAATTTTGGAAGAAGACGACACGTCGGCGAAGGCTCCGCCAGCGAAGAAGGTTAGGTTTCCGAAGGGGAAGAAGGTGAAGCCCGAAGATGAAAAAGCCAGAGTCGGCGATGCGATCGGTCCGACGCCGCACACGGATCCTAGCCTCGCCGCGAAAGAGAGGGCCAAGCGCCGCAGCGAAGAGAAGGTCAAGCTCAGCGGCGAGATCGCTAAGCTCTATACAGACGACGACGACGCCTCCGGCGACGAGGCCAGGAAATCGGGGCGGCAGAACTTCGTTGAGGACGGCATGCAGTTCGAGCCGTTTAACTTGGAGAAGGAGAAGGAAGAAGGCTATTTCGATGCGGATGGGAATTTTGTGGAGTATGTGGATAAGAATCAAGTCAAGGATGCTTGGCTTGATAGCTTGAACAAGGCTGTTGATCCGGAAACGACGAGGAAATTCGCTGCGAAGAATGGGGATGGTGGTGAAGGTGATGATGAAGGTGGTCAGGATTTGAGTTCCGATGAGATTGGGAAGATTAAGAGGCGGATTGCGGATGCGCTGGAGCCGGAGGAGACTGTTTTGCAGGCTCTGAGGAGGCTGAAGGGGAACAAGAAGGAGAAGATGCCGGCCGAGAGGAAGGCGGTGTTTGATCAGCTGACTGAGGATGCTATGGTGTTGATGATGAAGAATGGGGAGAACAATGTGTATGATGAGGAGAAGGAGGTTTTCGAGAGGGAGGCGCAGGGGTATGAGAGCTTGGCTAAGGCGAGGATGGGGGAAGGGAAGTCGATACTGGATGAGCTCGAGAGTGATGCTGGGGCTTTGAATTCGATCGCGTCCATTGGTGGTGTTGGTGGTGGTGAGGGAGGTGGCACTGTGGCTGATGATGATGCATTTGATATGTTTGGGGATGATGAGCCTGCAGTTGTGGCCAATGCTGCTGCTGCTGCTGCTGCTGCTGAGCCGGGTTTGGAGAACAATGGTGGAGGATTGGGGAATGATTATGTGTTTGATGATGCTTCTGGGTACTACTATAGTCACAGCTTGGGGTACTATTATGATCCGAATACAGGGTTGTATTGCTCGGCAGCGTCAGGGTTGTGGTACTCGTACAATGCTGAGACTGGGACATATGATGAAGTTGCACACCAGGCACCTGAGGCCACTGCAGCCGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

42.87

Weight (kDa)

4.52

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 335 - 383 1.1e-17 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1159
AccBSI CCGCTC 1 cut(s) 9
AccII CGCG 2 cut(s) 173, 842
AccIII TCCGGA 1 cut(s) 445
AclWI GGATC 4 cut(s) 152, 165, 437, 1061
AcoI YGGCCR 2 cut(s) 633, 936
AcsI RAATTY 4 cut(s) 24, 373, 461, 832
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 2 cut(s) 146, 255
AfaI GTAC 4 cut(s) 1034, 1058, 1112, 1118
AfiI CCNNNNNNNGG 1 cut(s) 1076
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 2 cut(s) 430, 832
AhdI GACNNNNNGTC 1 cut(s) 43
AjiI CACGTC 1 cut(s) 45
AjnI CCWGG 2 cut(s) 272, 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 7 cut(s) 214, 235, 426, 661, 762, 808, 1050
AluI AGCT 7 cut(s) 214, 235, 426, 661, 762, 808, 1050
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 2 cut(s) 572, 1121
AlwI GGATC 4 cut(s) 152, 165, 437, 1061
AlwNI CAGNNNCTG 2 cut(s) 595, 1181
Ama87I CYCGRG 1 cut(s) 809
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 5 cut(s) 183, 270, 633, 936, 1167
ApoI RAATTY 4 cut(s) 24, 373, 461, 832
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AspLEI GCGC 3 cut(s) 192, 565, 748
AspS9I GGNCC 3 cut(s) 4, 140, 183
AsuC2I CCSGG 1 cut(s) 972
AsuHPI GGTGA 4 cut(s) 109, 500, 506, 878
AvaI CYCGRG 1 cut(s) 809
AvaII GGWCC 2 cut(s) 4, 140
AxyI CCTNAGG 1 cut(s) 1164
BalI TGGCCA 1 cut(s) 938
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 1159
BanII GRGCYC 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 810
BccI CCATC 3 cut(s) 362, 476, 772
BceAI ACGGC 2 cut(s) 307, 322
BcgI CGANNNNNNTGC 4 cut(s) 298, 332, 800, 834
BciT130I CCWGG 2 cut(s) 274, 1157
BclI TGATCA 1 cut(s) 655
BcnI CCSGG 1 cut(s) 972
BcoDI GTCTC 2 cut(s) 572, 1121
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 3 cut(s) 927, 1039, 1173
BfoI RGCGCY 1 cut(s) 193
BlpI GCTNAGC 3 cut(s) 215, 231, 966
Bme1390I CCNGG 3 cut(s) 274, 972, 1157
Bme18I GGWCC 2 cut(s) 4, 140
BmeRI GACNNNNNGTC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 809
BmgBI CACGTC 1 cut(s) 45
BmgT120I GGNCC 3 cut(s) 4, 140, 183
BmiI GGNNCC 4 cut(s) 57, 159, 570, 1161
BmrFI CCNGG 3 cut(s) 274, 972, 1157
BmrI ACTGGG 1 cut(s) 1140
BmsI GCATC 9 cut(s) 121, 352, 400, 550, 618, 661, 808, 886, 1012
BmuI ACTGGG 1 cut(s) 1140
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 587
Bpu10I CCTNAGC 1 cut(s) 768
Bpu1102I GCTNAGC 3 cut(s) 215, 231, 966
BpuMI CCSGG 1 cut(s) 972
BsaBI GATNNNNATC 1 cut(s) 396
BsaHI GRCGYC 2 cut(s) 146, 255
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 1076
Bse118I RCCGGY 1 cut(s) 631
Bse1I ACTGG 2 cut(s) 804, 1135
Bse21I CCTNAGG 1 cut(s) 1164
Bse8I GATNNNNATC 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 445
BseBI CCWGG 2 cut(s) 274, 1157
BseGI GGATG 8 cut(s) 373, 415, 487, 565, 676, 783, 808, 922
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 1 cut(s) 1076
BseMII CTCAG 6 cut(s) 229, 587, 657, 957, 1116, 1155
BseNI ACTGG 2 cut(s) 804, 1135
BseRI GAGGAG 3 cut(s) 590, 613, 734
BseX3I CGGCCG 1 cut(s) 633
BseYI CCCAGC 1 cut(s) 821
Bsh1236I CGCG 2 cut(s) 173, 842
Bsh1285I CGRYCG 3 cut(s) 138, 636, 840
BshFI GGCC 5 cut(s) 185, 272, 635, 938, 1169
BshNI GGYRCC 1 cut(s) 1159
BsiEI CGRYCG 3 cut(s) 138, 636, 840
BsiHKAI GWGCWC 1 cut(s) 810
BsiHKCI CYCGRG 1 cut(s) 809
BsiSI CCGG 5 cut(s) 261, 446, 572, 632, 971
BslFI GGGAC 1 cut(s) 1147
BslI CCNNNNNNNGG 1 cut(s) 1076
BsmAI GTCTC 2 cut(s) 572, 1121
BsmFI GGGAC 1 cut(s) 1147
BsnI GGCC 5 cut(s) 185, 272, 635, 938, 1169
BsoBI CYCGRG 1 cut(s) 809
Bsp1286I GDGCHC 1 cut(s) 810
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 7 cut(s) 135, 157, 225, 442, 655, 837, 1066
Bsp1720I GCTNAGC 3 cut(s) 215, 231, 966
BspANI GGCC 5 cut(s) 185, 272, 635, 938, 1169
BspCNI CTCAG 6 cut(s) 228, 588, 658, 958, 1117, 1156
BspEI TCCGGA 1 cut(s) 445
BspFNI CGCG 2 cut(s) 173, 842
BspLI GGNNCC 4 cut(s) 57, 159, 570, 1161
BspMAI CTGCAG 2 cut(s) 931, 1177
BspPI GGATC 4 cut(s) 152, 165, 437, 1061
BspT107I GGYRCC 1 cut(s) 1159
BsrBI CCGCTC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 631
BsrI ACTGG 2 cut(s) 804, 1135
BssAI RCCGGY 1 cut(s) 631
BssMI GATC 7 cut(s) 135, 157, 225, 442, 655, 837, 1066
BssNI GRCGYC 2 cut(s) 146, 255
Bst2UI CCWGG 2 cut(s) 274, 1157
Bst4CI ACNGT 2 cut(s) 583, 883
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 2 cut(s) 146, 255
BstC8I GCNNGC 5 cut(s) 63, 311, 591, 633, 927
BstDEI CTNAG 8 cut(s) 215, 231, 596, 666, 768, 966, 1125, 1164
BstF5I GGATG 8 cut(s) 373, 415, 487, 565, 676, 783, 808, 922
BstFNI CGCG 2 cut(s) 173, 842
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 3 cut(s) 192, 565, 748
BstKTI GATC 7 cut(s) 138, 160, 228, 445, 658, 840, 1069
BstMAI GTCTC 2 cut(s) 572, 1121
BstMBI GATC 7 cut(s) 135, 157, 225, 442, 655, 837, 1066
BstMCI CGRYCG 3 cut(s) 138, 636, 840
BstNI CCWGG 2 cut(s) 274, 1157
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 3 cut(s) 272, 970, 1155
BstSFI CTRYAG 3 cut(s) 927, 1039, 1173
BstUI CGCG 2 cut(s) 173, 842
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BstZI CGGCCG 1 cut(s) 633
Bsu36I CCTNAGG 1 cut(s) 1164
BsuRI GGCC 5 cut(s) 185, 272, 635, 938, 1169
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 45
BtsCI GGATG 8 cut(s) 373, 415, 487, 565, 676, 783, 808, 922
BtsI GCAGTG 1 cut(s) 1170
BtsIMutI CAGTG 2 cut(s) 879, 1170
Cac8I GCNNGC 5 cut(s) 63, 311, 591, 633, 927
CaiI CAGNNNCTG 2 cut(s) 595, 1181
CfoI GCGC 3 cut(s) 192, 565, 748
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 3 cut(s) 4, 140, 183
CpoI CGGWCCG 1 cut(s) 140
CseI GACGC 4 cut(s) 154, 263, 831, 1086
Csp6I GTAC 4 cut(s) 1033, 1057, 1111, 1117
CspI CGGWCCG 1 cut(s) 140
CviAII CATG 1 cut(s) 310
CviQI GTAC 4 cut(s) 1033, 1057, 1111, 1117
DdeI CTNAG 8 cut(s) 215, 231, 596, 666, 768, 966, 1125, 1164
DpnI GATC 7 cut(s) 137, 159, 227, 444, 657, 839, 1068
DpnII GATC 7 cut(s) 135, 157, 225, 442, 655, 837, 1066
DriI GACNNNNNGTC 1 cut(s) 43
EaeI YGGCCR 2 cut(s) 633, 936
EagI CGGCCG 1 cut(s) 633
Eam1104I CTCTTC 1 cut(s) 195
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 195
EciI GGCGGA 2 cut(s) 48, 565
Ecl136II GAGCTC 1 cut(s) 808
EclXI CGGCCG 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 810
Eco47I GGWCC 2 cut(s) 4, 140
Eco52I CGGCCG 1 cut(s) 633
Eco53kI GAGCTC 1 cut(s) 808
Eco57I CTGAAG 1 cut(s) 626
Eco81I CCTNAGG 1 cut(s) 1164
Eco88I CYCGRG 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 808
EcoRI GAATTC 1 cut(s) 832
EcoRII CCWGG 2 cut(s) 272, 1155
EcoT22I ATGCAT 1 cut(s) 901
EcoT38I GRGCYC 1 cut(s) 810
FaeI CATG 1 cut(s) 313
FaqI GGGAC 1 cut(s) 1147
FatI CATG 1 cut(s) 309
FauNDI CATATG 1 cut(s) 1138
FbaI TGATCA 1 cut(s) 655
FokI GGATG 8 cut(s) 380, 422, 494, 572, 683, 790, 815, 929
FriOI GRGCYC 1 cut(s) 810
FspBI CTAG 1 cut(s) 162
GlaI GCGC 3 cut(s) 191, 564, 747
GsaI CCCAGC 1 cut(s) 825
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 5 cut(s) 185, 272, 635, 938, 1169
HapII CCGG 5 cut(s) 261, 446, 572, 632, 971
HgaI GACGC 4 cut(s) 154, 263, 831, 1086
HhaI GCGC 3 cut(s) 192, 565, 748
Hin1I GRCGYC 2 cut(s) 146, 255
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 3 cut(s) 190, 563, 746
HinP1I GCGC 3 cut(s) 190, 563, 746
HinfI GANTC 2 cut(s) 123, 397
HpaII CCGG 5 cut(s) 261, 446, 572, 632, 971
HphI GGTGA 4 cut(s) 109, 500, 506, 878
Hpy188I TCNGA 6 cut(s) 18, 84, 144, 526, 597, 1071
Hpy188III TCNNGA 4 cut(s) 446, 512, 736, 811
Hpy99I CGWCG 7 cut(s) 49, 148, 251, 254, 257, 269, 457
HpyCH4III ACNGT 2 cut(s) 583, 883
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 6 cut(s) 313, 589, 899, 929, 1151, 1175
HpyF3I CTNAG 8 cut(s) 215, 231, 596, 666, 768, 966, 1125, 1164
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 2 cut(s) 146, 255
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 3 cut(s) 190, 563, 746
Kpn2I TCCGGA 1 cut(s) 445
KroI GCCGGC 1 cut(s) 631
KroNI GCCGGC 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 7 cut(s) 135, 157, 225, 442, 655, 837, 1066
LmnI GCTCC 3 cut(s) 14, 61, 568
LweI GCATC 9 cut(s) 121, 352, 400, 550, 618, 661, 808, 886, 1012
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 1043
MalI GATC 7 cut(s) 137, 159, 227, 444, 657, 839, 1068
MbiI CCGCTC 1 cut(s) 9
MboI GATC 7 cut(s) 135, 157, 225, 442, 655, 837, 1066
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 810
MlsI TGGCCA 1 cut(s) 938
MluCI AATT 5 cut(s) 24, 373, 461, 832, 1186
MluNI TGGCCA 1 cut(s) 938
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 167
Mox20I TGGCCA 1 cut(s) 938
Mph1103I ATGCAT 1 cut(s) 901
MroI TCCGGA 1 cut(s) 445
MroNI GCCGGC 1 cut(s) 631
MscI TGGCCA 1 cut(s) 938
MseI TTAA 2 cut(s) 327, 543
Msp20I TGGCCA 1 cut(s) 938
MspA1I CMGCKG 3 cut(s) 219, 661, 1181
MspI CCGG 5 cut(s) 261, 446, 572, 632, 971
MspR9I CCNGG 3 cut(s) 274, 972, 1157
MvaI CCWGG 2 cut(s) 274, 1157
MvnI CGCG 2 cut(s) 173, 842
NaeI GCCGGC 1 cut(s) 633
NciI CCSGG 1 cut(s) 972
NdeI CATATG 1 cut(s) 1138
NdeII GATC 7 cut(s) 135, 157, 225, 442, 655, 837, 1066
NgoMIV GCCGGC 1 cut(s) 631
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 4 cut(s) 57, 159, 570, 1161
NmeAIII GCCGAG 2 cut(s) 661, 1070
NmuCI GTSAC 1 cut(s) 1043
NsiI ATGCAT 1 cut(s) 901
NspI RCATGY 1 cut(s) 313
PaeI GCATGC 1 cut(s) 313
PaeR7I CTCGAG 1 cut(s) 809
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 633
PfeI GAWTC 1 cut(s) 397
Ple19I CGATCG 2 cut(s) 138, 840
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 810
Psp6I CCWGG 2 cut(s) 272, 1155
PspFI CCCAGC 1 cut(s) 821
PspGI CCWGG 2 cut(s) 272, 1155
PspN4I GGNNCC 4 cut(s) 57, 159, 570, 1161
PspPI GGNCC 3 cut(s) 4, 140, 183
PstI CTGCAG 2 cut(s) 931, 1177
PstNI CAGNNNCTG 2 cut(s) 595, 1181
PsuI RGATCY 1 cut(s) 157
PvuI CGATCG 2 cut(s) 138, 840
PvuII CAGCTG 1 cut(s) 661
RsaI GTAC 4 cut(s) 1034, 1058, 1112, 1118
RsaNI GTAC 4 cut(s) 1033, 1057, 1111, 1117
Rsr2I CGGWCCG 1 cut(s) 140
RsrII CGGWCCG 1 cut(s) 140
SacI GAGCTC 1 cut(s) 810
SaqAI TTAA 2 cut(s) 327, 543
Sau3AI GATC 7 cut(s) 135, 157, 225, 442, 655, 837, 1066
Sau96I GGNCC 3 cut(s) 4, 140, 183
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 274, 972, 1157
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 9 cut(s) 121, 352, 400, 550, 618, 661, 808, 886, 1012
SfcI CTRYAG 3 cut(s) 927, 1039, 1173
Sfr274I CTCGAG 1 cut(s) 809
SinI GGWCC 2 cut(s) 4, 140
SlaI CTCGAG 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
SphI GCATGC 1 cut(s) 313
Sse9I AATT 5 cut(s) 24, 373, 461, 832, 1186
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 810
StyD4I CCNGG 3 cut(s) 272, 970, 1155
TaaI ACNGT 2 cut(s) 583, 883
TaiI ACGT 1 cut(s) 47
TaqI TCGA 6 cut(s) 318, 360, 735, 794, 810, 836
TaqII GACCGA 1 cut(s) 128
TasI AATT 5 cut(s) 24, 373, 461, 832, 1186
TauI GCSGC 6 cut(s) 151, 173, 195, 222, 289, 1181
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 2 cut(s) 327, 543
Tru9I TTAA 2 cut(s) 327, 543
TscAI CASTG 2 cut(s) 886, 1177
TseFI GTSAC 1 cut(s) 1043
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 4 cut(s) 126, 516, 704, 1158
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 2 cut(s) 886, 1177
VpaK11BI GGWCC 2 cut(s) 4, 140
XapI RAATTY 4 cut(s) 24, 373, 461, 832
XceI RCATGY 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 809
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.