Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003252

Physical Location & Seq

Genomic Coordinates Forward (+)

46977760 .. 46978681

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTCTCAAATGCGATAGAAGAAGACTATTTCGATGCGGATGGGAATTTTGTGGAGTACGTGGAGAAGAATCAAGTTAAAGACGCTTGGCTTGATAGCATCACCAAACCTGTTGATCCAGAACTGGGAACAACGGTGGTGGTGGTGAAGGTGATGATGAAATTGGCCCTGACGAGGCTGAAGCGAAACAAGAAGGAGAAGATATCGGCGGAGACGAAGGCGGTGTTTGATCAGTTGACTGAGGATGCTATGGCGTTGATGATGAAGAACAGGGAGAATAATGTGTATGATGAGGAGAAGGAGGTTCTCGAATGGGAGGCACAGGGGTATGAGAGTTTGGCTAAGGCGAGAATGGGGGGAGGGAAGTCGGTACTGGAGGAGCTCGAAACTAATGCTAGGTCGTCGAATTCGATTGCGTCCATTAGTGCTGTTGGTGGTGGTGATTGTGTGGCTAATGATGATGCTTTTGATATGTTTGGGGACGATGATGAGCCTGCAGTTGTGGCGAATGCTGCTGCCCCGGGTTTGGAGAATAATGGTGGAGGGGTGGAGAATGATACATGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.57

Weight (kDa)

4.28

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09390 AT5G09390
fragaria_vesca	FvH4_4g13240 FvH4_5g07000
malus_domestica	MD05G1045100.v1.1 MD14G1166200.v1.1
prunus_persica	Prupe.5G160300_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1
pyrus_communis	pycom05g03760
rosa_chinensis	RchiOBHm_Chr7g0191681 RchiOBHm_Chr7g0224681
rosa_laevigata	RLG00000002642 RLG00000004434
rosa_multiflora	Rmu_sc0001123.1_g000011 Rmu_sc0018746.1_g000005 Rmu_sc0032119.1_g000001 Rmu_sc0035406.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438520 Rroxscaffold_3G00263650
rosa_rugosa	Rorug06G0510900
rosa_samantha	Rh7AG120100 Rh7AG377800 Rh7BG122200 Rh7CG124800 Rh7CG397000 Rh7DG123000
rosa_wichuraiana	Rw7G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	38, 209, 221
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	46, 406
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	59, 372
AfiI	CCNNNNNNNGG	3 cut(s)	125, 174, 526
AflIII	ACRYGT	1 cut(s)	560
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	520
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	512, 515
ApoI	RAATTY	2 cut(s)	46, 406
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	521, 522
AsuHPI	GGTGA	4 cut(s)	94, 157, 163, 452
AvaI	CYCGRG	1 cut(s)	520
BaeI	ACNNNNGTAYC	1 cut(s)	549
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	499, 502
BccI	CCATC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	2 cut(s)	521, 522
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	495
BisI	GCNGC	2 cut(s)	513, 516
BlsI	GCNGC	2 cut(s)	514, 517
Bme1390I	CCNGG	2 cut(s)	521, 522
BmeT110I	CYCGRG	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	521, 522
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	4 cut(s)	25, 108, 235, 451
BmuI	ACTGGG	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	521, 522
BsaAI	YACGTR	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	519, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 174, 526
Bse1I	ACTGG	2 cut(s)	129, 378
BseDI	CCNNGG	2 cut(s)	519, 520
BseGI	GGATG	2 cut(s)	46, 250
BseLI	CCNNNNNNNGG	3 cut(s)	125, 174, 526
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	129, 378
BseRI	GAGGAG	2 cut(s)	308, 392
BseXI	GCAGC	2 cut(s)	499, 502
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	3 cut(s)	125, 174, 526
BsmAI	GTCTC	1 cut(s)	206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	520
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	115, 229
BspACI	CCGC	3 cut(s)	38, 209, 221
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	129, 378
BssECI	CCNNGG	2 cut(s)	519, 520
BssMI	GATC	2 cut(s)	115, 229
Bst4CI	ACNGT	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	2 cut(s)	240, 342
BstF5I	GGATG	2 cut(s)	46, 250
BstKTI	GATC	2 cut(s)	118, 232
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	115, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 512
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	2 cut(s)	519, 520
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	2 cut(s)	499, 502
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	46, 250
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	166
Cfr9I	CCCGGG	1 cut(s)	520
CseI	GACGC	2 cut(s)	92, 405
Csp6I	GTAC	2 cut(s)	58, 371
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	1 cut(s)	561
CviJI	RGCY	7 cut(s)	91, 167, 178, 341, 382, 452, 493
CviKI_1	RGCY	7 cut(s)	91, 167, 178, 341, 382, 452, 493
CviQI	GTAC	2 cut(s)	58, 371
DdeI	CTNAG	2 cut(s)	240, 342
DpnI	GATC	2 cut(s)	117, 231
DpnII	GATC	2 cut(s)	115, 229
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	1 cut(s)	564
FaiI	YATR	5 cut(s)	251, 288, 330, 473, 562
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	1 cut(s)	560
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	513, 516
FokI	GGATG	2 cut(s)	53, 257
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	513, 516
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	2 cut(s)	513, 516
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	521
HgaI	GACGC	2 cut(s)	92, 405
Hin1II	CATG	1 cut(s)	564
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	4 cut(s)	94, 157, 163, 452
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	119, 308
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	4 cut(s)	142, 187, 211, 292
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 512
HpyF3I	CTNAG	2 cut(s)	240, 342
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	564
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	115, 229
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	9 cut(s)	110, 123, 132, 182, 256, 308, 359, 507, 534
Lsp1109I	GCAGC	2 cut(s)	499, 502
LweI	GCATC	4 cut(s)	25, 108, 235, 451
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	1 cut(s)	60
MalI	GATC	2 cut(s)	117, 231
MboI	GATC	2 cut(s)	115, 229
MboII	GAAGA	5 cut(s)	32, 35, 79, 211, 277
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	46, 161, 406
MnlI	CCTC	8 cut(s)	168, 235, 286, 295, 310, 353, 370, 536
MseI	TTAA	1 cut(s)	78
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	2 cut(s)	521, 522
Mva1269I	GAATGC	1 cut(s)	514
MwoI	GCNNNNNNNGC	2 cut(s)	503, 512
NciI	CCSGG	2 cut(s)	521, 522
NdeII	GATC	2 cut(s)	115, 229
NlaIII	CATG	1 cut(s)	564
NspI	RCATGY	1 cut(s)	564
PciI	ACATGT	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	2 cut(s)	212, 407
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	514, 517
Ppu21I	YACGTR	1 cut(s)	61
PscI	ACATGT	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	499
RsaI	GTAC	2 cut(s)	59, 372
RsaNI	GTAC	2 cut(s)	58, 371
SacI	GAGCTC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	513, 516
Sau3AI	GATC	2 cut(s)	115, 229
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	521, 522
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	6 cut(s)	63, 112, 153, 306, 384, 401
SfaNI	GCATC	4 cut(s)	25, 108, 235, 451
SfcI	CTRYAG	1 cut(s)	495
SmaI	CCCGGG	1 cut(s)	522
Sse9I	AATT	3 cut(s)	46, 161, 406
SsiI	CCGC	3 cut(s)	38, 209, 221
SspMI	CTAG	1 cut(s)	396
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	519, 520
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	5 cut(s)	33, 309, 384, 404, 410
TasI	AATT	3 cut(s)	46, 161, 406
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	2 cut(s)	512, 515
TspDTI	ATGAA	2 cut(s)	173, 278
TspMI	CCCGGG	1 cut(s)	520
XapI	RAATTY	2 cut(s)	46, 406
XceI	RCATGY	1 cut(s)	564
XmaI	CCCGGG	1 cut(s)	520
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.