Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001123.1

Orthogroup ID

OG0003252

Physical Location & Seq

Genomic Coordinates Forward (+)

43606 .. 44763

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001123.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgtcacgctccaatctgaaacgctccttcgaagacgacgacatggccggaaagcctccaccggcgaagaaggttagatttccgaaggggaagaaggtgaagccggaagacgaacaagccagagtcggtggcggtggcgatgcgatcggtccgacgccgcagacggacgctagcctcgctgcgaaagagcgcgcgaagcgccgcagcagccaaatctccgagctctgcaaggacgacgacgcctccgctgctgaggtcagttaccggggactggactacgagaacttcgtcgaggacggcgttcagtttgagccgtttaacttggagaaggagagagaagaaggctattttgatgcggatgggaattttgtggagtatgtggagaagaatcaagtgaaggatgcttggcttgatagcatcaccaaagctgttgatccagaaacgacgaagaaattcgctgagaaaaacggtggtggtggtgaaggtgaaggtgatgatgaagttgatcaggatttgagttccgatgagattgggaagatcaagaggcggattgcggatgtgctggagccggaggagactgtgttgcaggctctgaggaggctgaaggggaacaagaaggagaagatgtcggcggagacgaaggcggtgtttgatcagttgactgaggatgctatggtgttgatgatgaagaatggggagaacaatgtgtatgatgaggagaaggaggttttcgagagggaggcgcaggggtatgagagtttggctaaggcgagaatggggggagggaagtcgatattggaggagctcgaaactgatgctgggacgtcgaattcgattgcatccattggtggtggtggtggtggtgtggctgatgatgatgcattcgatatgtttggggatgatgatgagcctgcagttgtggcgaatgctgctgcgcccggtttggagaataatggtggaggattggggaatgattatgtgtttgatgatgcttctgggtactattatagccacagcttggggtactattatgatccaactacagggttgtattgctcagctgcttcggggttgtggtactcgtacaatgaggagactggggcatatgatgaagttgcacaccaggcacctgaggctgccgccgctgctgtgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

385

Amino Acids

41.7

Weight (kDa)

4.39

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09390 AT5G09390
fragaria_vesca	FvH4_4g13240 FvH4_5g07000
malus_domestica	MD05G1045100.v1.1 MD14G1166200.v1.1
prunus_persica	Prupe.5G160300_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1
pyrus_communis	pycom05g03760
rosa_chinensis	RchiOBHm_Chr7g0191681 RchiOBHm_Chr7g0224681
rosa_laevigata	RLG00000002642 RLG00000004434
rosa_multiflora	Rmu_sc0001123.1_g000011 Rmu_sc0018746.1_g000005 Rmu_sc0032119.1_g000001 Rmu_sc0035406.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438520 Rroxscaffold_3G00263650
rosa_rugosa	Rorug06G0510900
rosa_samantha	Rh7AG120100 Rh7AG377800 Rh7BG122200 Rh7CG124800 Rh7CG397000 Rh7DG123000
rosa_wichuraiana	Rw7G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	1126
AccB7I	CCANNNNNTGG	1 cut(s)	1018
AccII	CGCG	2 cut(s)	192, 194
AclWI	GGATC	2 cut(s)	428, 1028
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	364, 452, 829
AcuI	CTGAAG	1 cut(s)	623
AcyI	GRCGYC	3 cut(s)	155, 240, 824
AfaI	GTAC	4 cut(s)	1001, 1025, 1079, 1085
AfiI	CCNNNNNNNGG	3 cut(s)	271, 1018, 1043
AjnI	CCWGG	1 cut(s)	1122
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AluBI	AGCT	5 cut(s)	223, 428, 805, 1017, 1061
AluI	AGCT	5 cut(s)	223, 428, 805, 1017, 1061
Alw21I	GWGCWC	2 cut(s)	225, 807
Alw26I	GTCTC	3 cut(s)	569, 629, 1088
AlwI	GGATC	2 cut(s)	428, 1028
AlwNI	CAGNNNCTG	1 cut(s)	592
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	9 cut(s)	179, 204, 207, 248, 929, 932, 1061, 1136, 1145
ApoI	RAATTY	3 cut(s)	364, 452, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	814, 846
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	5 cut(s)	192, 194, 201, 745, 937
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	266, 939
AsuHPI	GGTGA	5 cut(s)	109, 412, 491, 497, 503
AsuII	TTCGAA	1 cut(s)	30
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	1131
BanI	GGYRCC	1 cut(s)	1126
BanII	GRGCYC	2 cut(s)	225, 807
BbsI	GAAGAC	2 cut(s)	39, 114
Bbv12I	GWGCWC	2 cut(s)	225, 807
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	9 cut(s)	166, 216, 219, 235, 916, 919, 1048, 1123, 1132
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	2 cut(s)	298, 313
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	1 cut(s)	1124
BclI	TGATCA	2 cut(s)	505, 652
BcnI	CCSGG	2 cut(s)	266, 939
BcoDI	GTCTC	3 cut(s)	569, 629, 1088
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	2 cut(s)	912, 1041
BfoI	RGCGCY	1 cut(s)	202
BlpI	GCTNAGC	1 cut(s)	1057
Bme1390I	CCNGG	3 cut(s)	266, 939, 1124
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	567, 1128
BmrFI	CCNGG	3 cut(s)	266, 939, 1124
BmrI	ACTGGG	1 cut(s)	1107
BmsI	GCATC	9 cut(s)	130, 343, 391, 426, 658, 805, 848, 868, 979
BmtI	GCTAGC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	1107
BpiI	GAAGAC	2 cut(s)	39, 114
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	2 cut(s)	252, 765
Bpu1102I	GCTNAGC	1 cut(s)	1057
Bpu14I	TTCGAA	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	266, 939
BsaHI	GRCGYC	3 cut(s)	155, 240, 824
BsaJI	CCNNGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	6 cut(s)	227, 257, 566, 596, 611, 641
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 1018, 1043
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	276, 1102
Bse21I	CCTNAGG	1 cut(s)	1131
BseBI	CCWGG	1 cut(s)	1124
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	6 cut(s)	364, 406, 562, 673, 839, 904
BseLI	CCNNNNNNNGG	3 cut(s)	271, 1018, 1043
BseMII	CTCAG	6 cut(s)	243, 450, 584, 654, 1071, 1122
BseNI	ACTGG	2 cut(s)	276, 1102
BsePI	GCGCGC	1 cut(s)	190
BseRI	GAGGAG	5 cut(s)	587, 610, 731, 815, 1106
BseXI	GCAGC	9 cut(s)	166, 216, 219, 235, 916, 919, 1048, 1123, 1132
BseYI	CCCAGC	1 cut(s)	818
Bsh1236I	CGCG	2 cut(s)	192, 194
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	1126
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	225, 807
BsiSI	CCGG	6 cut(s)	48, 62, 104, 265, 569, 939
BslFI	GGGAC	2 cut(s)	282, 835
BslI	CCNNNNNNNGG	3 cut(s)	271, 1018, 1043
BsmAI	GTCTC	3 cut(s)	569, 629, 1088
BsmBI	CGTCTC	1 cut(s)	629
BsmFI	GGGAC	2 cut(s)	282, 835
BsmI	GAATGC	2 cut(s)	881, 931
BsnI	GGCC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	225, 807
Bsp143I	GATC	6 cut(s)	144, 433, 505, 537, 652, 1033
Bsp1720I	GCTNAGC	1 cut(s)	1057
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	6 cut(s)	244, 451, 585, 655, 1070, 1123
BspFNI	CGCG	2 cut(s)	192, 194
BspLI	GGNNCC	2 cut(s)	567, 1128
BspMAI	CTGCAG	1 cut(s)	916
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	428, 1028
BspT104I	TTCGAA	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	1126
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	276, 1102
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	265
BssHII	GCGCGC	1 cut(s)	190
BssMI	GATC	6 cut(s)	144, 433, 505, 537, 652, 1033
BssNI	GRCGYC	3 cut(s)	155, 240, 824
Bst2UI	CCWGG	1 cut(s)	1124
Bst4CI	ACNGT	2 cut(s)	470, 580
BstACI	GRCGYC	3 cut(s)	155, 240, 824
BstBI	TTCGAA	1 cut(s)	30
BstC8I	GCNNGC	4 cut(s)	172, 192, 588, 912
BstDEI	CTNAG	7 cut(s)	252, 459, 593, 663, 765, 1057, 1131
BstF5I	GGATG	6 cut(s)	364, 406, 562, 673, 839, 904
BstFNI	CGCG	2 cut(s)	192, 194
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	5 cut(s)	192, 194, 201, 745, 937
BstKTI	GATC	6 cut(s)	147, 436, 508, 540, 655, 1036
BstMAI	GTCTC	3 cut(s)	569, 629, 1088
BstMBI	GATC	6 cut(s)	144, 433, 505, 537, 652, 1033
BstMCI	CGRYCG	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	1124
BstSCI	CCNGG	3 cut(s)	264, 937, 1122
BstSFI	CTRYAG	2 cut(s)	912, 1041
BstUI	CGCG	2 cut(s)	192, 194
BstV1I	GCAGC	9 cut(s)	166, 216, 219, 235, 916, 919, 1048, 1123, 1132
BstV2I	GAAGAC	2 cut(s)	39, 114
Bsu36I	CCTNAGG	1 cut(s)	1131
BsuRI	GGCC	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	6 cut(s)	364, 406, 562, 673, 839, 904
Cac8I	GCNNGC	4 cut(s)	172, 192, 588, 912
CaiI	CAGNNNCTG	1 cut(s)	592
CfoI	GCGC	5 cut(s)	192, 194, 201, 745, 937
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	149
CpoI	CGGWCCG	1 cut(s)	149
CseI	GACGC	3 cut(s)	163, 176, 248
Csp6I	GTAC	4 cut(s)	1000, 1024, 1078, 1084
CspI	CGGWCCG	1 cut(s)	149
CviAII	CATG	1 cut(s)	43
CviQI	GTAC	4 cut(s)	1000, 1024, 1078, 1084
DdeI	CTNAG	7 cut(s)	252, 459, 593, 663, 765, 1057, 1131
DpnI	GATC	6 cut(s)	146, 435, 507, 539, 654, 1035
DpnII	GATC	6 cut(s)	144, 433, 505, 537, 652, 1033
EaeI	YGGCCR	1 cut(s)	45
EciI	GGCGGA	2 cut(s)	562, 647
Ecl136II	GAGCTC	2 cut(s)	223, 805
Eco24I	GRGCYC	2 cut(s)	225, 807
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	2 cut(s)	223, 805
Eco57I	CTGAAG	1 cut(s)	623
Eco81I	CCTNAGG	1 cut(s)	1131
EcoICRI	GAGCTC	2 cut(s)	223, 805
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	1122
EcoT22I	ATGCAT	1 cut(s)	883
EcoT38I	GRGCYC	2 cut(s)	225, 807
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	1 cut(s)	46
FaqI	GGGAC	2 cut(s)	282, 835
FatI	CATG	1 cut(s)	42
FauNDI	CATATG	1 cut(s)	1105
FbaI	TGATCA	2 cut(s)	505, 652
FokI	GGATG	6 cut(s)	371, 413, 569, 680, 826, 911
FriOI	GRGCYC	2 cut(s)	225, 807
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	5 cut(s)	191, 193, 200, 744, 936
GsaI	CCCAGC	1 cut(s)	822
GsuI	CTGGAG	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	6 cut(s)	48, 62, 104, 265, 569, 939
HgaI	GACGC	3 cut(s)	163, 176, 248
HhaI	GCGC	5 cut(s)	192, 194, 201, 745, 937
Hin1I	GRCGYC	3 cut(s)	155, 240, 824
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	5 cut(s)	190, 192, 199, 743, 935
HinP1I	GCGC	5 cut(s)	190, 192, 199, 743, 935
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HinfI	GANTC	2 cut(s)	123, 388
HpaII	CCGG	6 cut(s)	48, 62, 104, 265, 569, 939
HphI	GGTGA	5 cut(s)	109, 412, 491, 497, 503
Hpy166II	GTNNAC	1 cut(s)	660
Hpy188I	TCNGA	6 cut(s)	18, 84, 153, 220, 523, 594
Hpy188III	TCNNGA	4 cut(s)	437, 509, 541, 733
Hpy8I	GTNNAC	1 cut(s)	660
Hpy99I	CGWCG	7 cut(s)	41, 157, 239, 242, 293, 448, 829
HpyCH4III	ACNGT	2 cut(s)	470, 580
HpyCH4IV	ACGT	1 cut(s)	824
HpyCH4V	TGCA	6 cut(s)	228, 586, 839, 881, 914, 1118
HpyF3I	CTNAG	7 cut(s)	252, 459, 593, 663, 765, 1057, 1131
HpySE526I	ACGT	1 cut(s)	824
Hsp92I	GRCGYC	3 cut(s)	155, 240, 824
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	5 cut(s)	190, 192, 199, 743, 935
Ksp22I	TGATCA	2 cut(s)	505, 652
Kzo9I	GATC	6 cut(s)	144, 433, 505, 537, 652, 1033
LmnI	GCTCC	4 cut(s)	14, 29, 565, 802
Lsp1109I	GCAGC	9 cut(s)	166, 216, 219, 235, 916, 919, 1048, 1123, 1132
LweI	GCATC	9 cut(s)	130, 343, 391, 426, 658, 805, 848, 868, 979
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	824
MaeIII	GTNAC	2 cut(s)	3, 260
MalI	GATC	6 cut(s)	146, 435, 507, 539, 654, 1035
MboI	GATC	6 cut(s)	144, 433, 505, 537, 652, 1033
MhlI	GDGCHC	2 cut(s)	225, 807
MluCI	AATT	4 cut(s)	364, 452, 829, 1153
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	176, 1061
Mph1103I	ATGCAT	1 cut(s)	883
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	3 cut(s)	248, 1061, 1145
MspI	CCGG	6 cut(s)	48, 62, 104, 265, 569, 939
MspR9I	CCNGG	3 cut(s)	266, 939, 1124
Mva1269I	GAATGC	2 cut(s)	881, 931
MvaI	CCWGG	1 cut(s)	1124
MvnI	CGCG	2 cut(s)	192, 194
NciI	CCSGG	2 cut(s)	266, 939
NdeI	CATATG	1 cut(s)	1105
NdeII	GATC	6 cut(s)	144, 433, 505, 537, 652, 1033
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	567, 1128
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	883
NspV	TTCGAA	1 cut(s)	30
PauI	GCGCGC	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	5 cut(s)	36, 285, 297, 635, 830
PctI	GAATGC	2 cut(s)	881, 931
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	388
PflMI	CCANNNNNTGG	1 cut(s)	1018
Ple19I	CGATCG	1 cut(s)	147
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp124BI	GAGCTC	2 cut(s)	225, 807
Psp6I	CCWGG	1 cut(s)	1122
PspFI	CCCAGC	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	1122
PspN4I	GGNNCC	2 cut(s)	567, 1128
PspPI	GGNCC	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	592
PteI	GCGCGC	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	1061
RsaI	GTAC	4 cut(s)	1001, 1025, 1079, 1085
RsaNI	GTAC	4 cut(s)	1000, 1024, 1078, 1084
Rsr2I	CGGWCCG	1 cut(s)	149
RsrII	CGGWCCG	1 cut(s)	149
SacI	GAGCTC	2 cut(s)	225, 807
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	6 cut(s)	144, 433, 505, 537, 652, 1033
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	3 cut(s)	266, 939, 1124
SduI	GDGCHC	2 cut(s)	225, 807
SfaNI	GCATC	9 cut(s)	130, 343, 391, 426, 658, 805, 848, 868, 979
SfcI	CTRYAG	2 cut(s)	912, 1041
SfuI	TTCGAA	1 cut(s)	30
SgrAI	CRCCGGYG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	4 cut(s)	364, 452, 829, 1153
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	2 cut(s)	225, 807
StyD4I	CCNGG	3 cut(s)	264, 937, 1122
TaaI	ACNGT	2 cut(s)	470, 580
TaiI	ACGT	1 cut(s)	827
TaqI	TCGA	8 cut(s)	30, 291, 732, 791, 807, 827, 833, 885
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	4 cut(s)	364, 452, 829, 1153
TauI	GCSGC	4 cut(s)	160, 204, 1142, 1145
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	9 cut(s)	179, 204, 207, 248, 929, 932, 1061, 1136, 1145
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	513, 701, 1125
TspGWI	ACGGA	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	1018
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	3 cut(s)	364, 452, 829
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	825
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.