RchiOBHm_Chr7g0191681

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003252
Physical Location & Seq
Forward (+)
10348509 .. 10350167
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17130

Sequence Viewer

Length: 1161 bp
ATGTCACGCTCCAATCTGAAACGCTCCTTCGAAGACGACGACATGGCCGGAAAGCCTCCGCCGGCGAAGAAGGTTAGATTTCCGAAGGGGAAGAAGGTGAAGCCGGAAGACGAACAAGCCAGAGTCGGTGGCGGTGGCGATGCGATCGGTCCGACGCCGCAGACGGACGCTAGCCTCGCTGCGAAAGAGCGCGCGAAGCGCCGCAGCAGCCAAATCTCCGAGCTCTGCAAGGACGACGACGCCTCCGCCGCGGAGGTCAGTTACCGGGGACTGGACTACGAGAACTTCGTCGAGGACGGCGTTCAGTTTGAGCCGTTTAACTTGGAGAAGGAGAGAGAAGAAGGCTATTTTGATGCGGATGGGAATTTTGTGGAGTATGTGGAGAAGAATCAAGTGAAGGATGCTTGGCTTGATAGCATCACCAAAGCTGTTGATCCAGAAACGACGAAGAAATTCGCTGAGAAAAACGGTGGTGGGGGTGAAGGTGAAGGTGATGATGAAGTTGGTCAGGATTTGAGTTCCGATGAGATTGGGAAGATCAAGAGGCGGATTGCGGATGTGCTGGAGCCGGAGGAGACTGTTTTGCAGGCTCTGAGGAGGCTGAAGGGGAACAAGAAGGAGAAGATGTCGGCTGAGACGAAGGCGGTGTTTGATCAGTTGACTGAGGATGCTATGGTGTTGATGATGAAGAATGGGGAGAATAATGTGTATGATGAGGAGAAGGAGGTTTTCGAGAGGGAGGCGCAGGGGTATGAGAGTTTGGCTAAGGCGAGAATGGGGGGAGGGAAGTCGATATTGGAGGAGCTCGAAACTGATGCTGGGACGTCGAATTCGATTGCATCCATTGGTGGTGGTGGCGGTGGTGGTGTGGCTGATGATGATGCATTCGATATGTTTGGGGATGATGATGAGCCTGCAGTTGTGGCGAATGCTGCTGCGCCCGGTTTGGAGAATAATGGTGGAGGATTGGGGAATGATTATGTGTTTGATGATGCTTCTGGGTACTATTATAGCCACAGCTTGGGGTACTATTATGATCCAACTACAGGGTTGTATTGCTCAGCTGCTTCGGGGTTGTGGTACTCGTACAATGAGGAGACTGGGGCATATGATGAAGTTGCACACCAGGCACCTGAGGCTGCCGCCGCTGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

41.7

Weight (kDa)

4.41

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 325 - 373 4.3e-17 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 827
AccB1I GGYRCC 1 cut(s) 1129
AccB7I CCANNNNNTGG 1 cut(s) 1021
AccII CGCG 3 cut(s) 192, 194, 251
AclWI GGATC 2 cut(s) 428, 1031
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 3 cut(s) 364, 452, 829
AcuI CTGAAG 1 cut(s) 623
AcyI GRCGYC 3 cut(s) 155, 240, 824
AfaI GTAC 4 cut(s) 1004, 1028, 1082, 1088
AfiI CCNNNNNNNGG 3 cut(s) 271, 1021, 1046
AjnI CCWGG 1 cut(s) 1125
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
AluBI AGCT 5 cut(s) 223, 428, 805, 1020, 1064
AluI AGCT 5 cut(s) 223, 428, 805, 1020, 1064
Alw21I GWGCWC 2 cut(s) 225, 807
Alw26I GTCTC 3 cut(s) 569, 629, 1091
AlwI GGATC 2 cut(s) 428, 1031
AlwNI CAGNNNCTG 1 cut(s) 592
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 8 cut(s) 179, 204, 207, 932, 935, 1064, 1139, 1148
ApoI RAATTY 3 cut(s) 364, 452, 829
ArsI GACNNNNNNTTYG 2 cut(s) 814, 846
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 5 cut(s) 192, 194, 201, 745, 940
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 2 cut(s) 266, 942
AsuHPI GGTGA 5 cut(s) 109, 412, 491, 497, 503
AsuII TTCGAA 1 cut(s) 30
AsuNHI GCTAGC 1 cut(s) 170
AvaII GGWCC 1 cut(s) 149
AxyI CCTNAGG 1 cut(s) 1134
BanI GGYRCC 1 cut(s) 1129
BanII GRGCYC 2 cut(s) 225, 807
BbsI GAAGAC 2 cut(s) 39, 114
Bbv12I GWGCWC 2 cut(s) 225, 807
BbvI GCAGC 8 cut(s) 166, 216, 219, 919, 922, 1051, 1126, 1135
BccI CCATC 1 cut(s) 353
BceAI ACGGC 2 cut(s) 298, 313
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 1 cut(s) 1127
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 2 cut(s) 266, 942
BcoDI GTCTC 3 cut(s) 569, 629, 1091
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 2 cut(s) 915, 1044
BfoI RGCGCY 1 cut(s) 202
BlpI GCTNAGC 1 cut(s) 1060
Bme1390I CCNGG 3 cut(s) 266, 942, 1127
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 567, 1131
BmrFI CCNGG 3 cut(s) 266, 942, 1127
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 9 cut(s) 130, 343, 391, 426, 658, 805, 848, 871, 982
BmtI GCTAGC 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 1110
BpiI GAAGAC 2 cut(s) 39, 114
BpmI CTGGAG 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 765
Bpu1102I GCTNAGC 1 cut(s) 1060
Bpu14I TTCGAA 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 266, 942
BsaHI GRCGYC 3 cut(s) 155, 240, 824
BsaJI CCNNGG 2 cut(s) 249, 265
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 611, 641
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 1021, 1046
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 276, 1105
Bse21I CCTNAGG 1 cut(s) 1134
BseBI CCWGG 1 cut(s) 1127
BseDI CCNNGG 2 cut(s) 249, 265
BseGI GGATG 6 cut(s) 364, 406, 562, 673, 839, 907
BseLI CCNNNNNNNGG 3 cut(s) 271, 1021, 1046
BseMII CTCAG 6 cut(s) 450, 584, 624, 654, 1074, 1125
BseNI ACTGG 2 cut(s) 276, 1105
BsePI GCGCGC 1 cut(s) 190
BseRI GAGGAG 5 cut(s) 587, 610, 731, 815, 1109
BseXI GCAGC 8 cut(s) 166, 216, 219, 919, 922, 1051, 1126, 1135
BseYI CCCAGC 1 cut(s) 818
Bsh1236I CGCG 3 cut(s) 192, 194, 251
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 1129
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 225, 807
BsiSI CCGG 6 cut(s) 48, 62, 104, 265, 569, 942
BslFI GGGAC 2 cut(s) 282, 835
BslI CCNNNNNNNGG 3 cut(s) 271, 1021, 1046
BsmAI GTCTC 3 cut(s) 569, 629, 1091
BsmBI CGTCTC 1 cut(s) 629
BsmFI GGGAC 2 cut(s) 282, 835
BsmI GAATGC 2 cut(s) 884, 934
BsnI GGCC 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 225, 807
Bsp143I GATC 5 cut(s) 144, 433, 537, 652, 1036
Bsp1720I GCTNAGC 1 cut(s) 1060
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 6 cut(s) 451, 585, 625, 655, 1073, 1126
BspFNI CGCG 3 cut(s) 192, 194, 251
BspLI GGNNCC 2 cut(s) 567, 1131
BspMAI CTGCAG 1 cut(s) 919
BspOI GCTAGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 428, 1031
BspT104I TTCGAA 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 1129
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 276, 1105
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 249, 265
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 5 cut(s) 144, 433, 537, 652, 1036
BssNI GRCGYC 3 cut(s) 155, 240, 824
Bst2UI CCWGG 1 cut(s) 1127
Bst4CI ACNGT 2 cut(s) 470, 580
BstACI GRCGYC 3 cut(s) 155, 240, 824
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 5 cut(s) 63, 172, 192, 588, 915
BstDEI CTNAG 7 cut(s) 459, 593, 633, 663, 765, 1060, 1134
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 6 cut(s) 364, 406, 562, 673, 839, 907
BstFNI CGCG 3 cut(s) 192, 194, 251
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 5 cut(s) 192, 194, 201, 745, 940
BstKTI GATC 5 cut(s) 147, 436, 540, 655, 1039
BstMAI GTCTC 3 cut(s) 569, 629, 1091
BstMBI GATC 5 cut(s) 144, 433, 537, 652, 1036
BstMCI CGRYCG 1 cut(s) 147
BstNI CCWGG 1 cut(s) 1127
BstSCI CCNGG 3 cut(s) 264, 940, 1125
BstSFI CTRYAG 2 cut(s) 915, 1044
BstUI CGCG 3 cut(s) 192, 194, 251
BstV1I GCAGC 8 cut(s) 166, 216, 219, 919, 922, 1051, 1126, 1135
BstV2I GAAGAC 2 cut(s) 39, 114
Bsu36I CCTNAGG 1 cut(s) 1134
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 6 cut(s) 364, 406, 562, 673, 839, 907
Cac8I GCNNGC 5 cut(s) 63, 172, 192, 588, 915
CaiI CAGNNNCTG 1 cut(s) 592
CfoI GCGC 5 cut(s) 192, 194, 201, 745, 940
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 149
Cfr42I CCGCGG 1 cut(s) 252
CpoI CGGWCCG 1 cut(s) 149
CseI GACGC 3 cut(s) 163, 176, 248
Csp6I GTAC 4 cut(s) 1003, 1027, 1081, 1087
CspI CGGWCCG 1 cut(s) 149
CviAII CATG 1 cut(s) 43
CviQI GTAC 4 cut(s) 1003, 1027, 1081, 1087
DdeI CTNAG 7 cut(s) 459, 593, 633, 663, 765, 1060, 1134
DpnI GATC 5 cut(s) 146, 435, 539, 654, 1038
DpnII GATC 5 cut(s) 144, 433, 537, 652, 1036
EaeI YGGCCR 1 cut(s) 45
EciI GGCGGA 3 cut(s) 48, 235, 562
Ecl136II GAGCTC 2 cut(s) 223, 805
Eco24I GRGCYC 2 cut(s) 225, 807
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 2 cut(s) 223, 805
Eco57I CTGAAG 1 cut(s) 623
Eco81I CCTNAGG 1 cut(s) 1134
EcoICRI GAGCTC 2 cut(s) 223, 805
EcoRI GAATTC 1 cut(s) 829
EcoRII CCWGG 1 cut(s) 1125
EcoT22I ATGCAT 1 cut(s) 886
EcoT38I GRGCYC 2 cut(s) 225, 807
Esp3I CGTCTC 1 cut(s) 629
FaeI CATG 1 cut(s) 46
FaqI GGGAC 2 cut(s) 282, 835
FatI CATG 1 cut(s) 42
FauNDI CATATG 1 cut(s) 1108
FbaI TGATCA 1 cut(s) 652
FokI GGATG 6 cut(s) 371, 413, 569, 680, 826, 914
FriOI GRGCYC 2 cut(s) 225, 807
FspBI CTAG 1 cut(s) 171
GlaI GCGC 5 cut(s) 191, 193, 200, 744, 939
GsaI CCCAGC 1 cut(s) 822
GsuI CTGGAG 1 cut(s) 584
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 1 cut(s) 47
HapII CCGG 6 cut(s) 48, 62, 104, 265, 569, 942
HgaI GACGC 3 cut(s) 163, 176, 248
HhaI GCGC 5 cut(s) 192, 194, 201, 745, 940
Hin1I GRCGYC 3 cut(s) 155, 240, 824
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 5 cut(s) 190, 192, 199, 743, 938
HinP1I GCGC 5 cut(s) 190, 192, 199, 743, 938
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HinfI GANTC 2 cut(s) 123, 388
HpaII CCGG 6 cut(s) 48, 62, 104, 265, 569, 942
HphI GGTGA 5 cut(s) 109, 412, 491, 497, 503
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 6 cut(s) 18, 84, 153, 220, 523, 594
Hpy188III TCNNGA 4 cut(s) 437, 509, 541, 733
Hpy8I GTNNAC 1 cut(s) 660
Hpy99I CGWCG 7 cut(s) 41, 157, 239, 242, 293, 448, 829
HpyCH4III ACNGT 2 cut(s) 470, 580
HpyCH4IV ACGT 1 cut(s) 824
HpyCH4V TGCA 6 cut(s) 228, 586, 839, 884, 917, 1121
HpyF3I CTNAG 7 cut(s) 459, 593, 633, 663, 765, 1060, 1134
HpySE526I ACGT 1 cut(s) 824
Hsp92I GRCGYC 3 cut(s) 155, 240, 824
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 5 cut(s) 190, 192, 199, 743, 938
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 652
KspI CCGCGG 1 cut(s) 252
Kzo9I GATC 5 cut(s) 144, 433, 537, 652, 1036
LmnI GCTCC 4 cut(s) 14, 29, 565, 802
Lsp1109I GCAGC 8 cut(s) 166, 216, 219, 919, 922, 1051, 1126, 1135
LweI GCATC 9 cut(s) 130, 343, 391, 426, 658, 805, 848, 871, 982
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 824
MaeIII GTNAC 2 cut(s) 3, 260
MalI GATC 5 cut(s) 146, 435, 539, 654, 1038
MboI GATC 5 cut(s) 144, 433, 537, 652, 1036
MhlI GDGCHC 2 cut(s) 225, 807
MluCI AATT 4 cut(s) 364, 452, 829, 1156
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 2 cut(s) 176, 1064
Mph1103I ATGCAT 1 cut(s) 886
MreI CGCCGGCG 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 318
MspA1I CMGCKG 3 cut(s) 251, 1064, 1148
MspI CCGG 6 cut(s) 48, 62, 104, 265, 569, 942
MspR9I CCNGG 3 cut(s) 266, 942, 1127
Mva1269I GAATGC 2 cut(s) 884, 934
MvaI CCWGG 1 cut(s) 1127
MvnI CGCG 3 cut(s) 192, 194, 251
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 2 cut(s) 266, 942
NdeI CATATG 1 cut(s) 1108
NdeII GATC 5 cut(s) 144, 433, 537, 652, 1036
NgoMIV GCCGGC 1 cut(s) 61
NheI GCTAGC 1 cut(s) 170
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 567, 1131
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 886
NspV TTCGAA 1 cut(s) 30
PauI GCGCGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 5 cut(s) 36, 285, 297, 635, 830
PctI GAATGC 2 cut(s) 884, 934
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 1021
Ple19I CGATCG 1 cut(s) 147
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp124BI GAGCTC 2 cut(s) 225, 807
Psp6I CCWGG 1 cut(s) 1125
PspFI CCCAGC 1 cut(s) 818
PspGI CCWGG 1 cut(s) 1125
PspN4I GGNNCC 2 cut(s) 567, 1131
PspPI GGNCC 1 cut(s) 149
PstI CTGCAG 1 cut(s) 919
PstNI CAGNNNCTG 1 cut(s) 592
PteI GCGCGC 1 cut(s) 190
PvuI CGATCG 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 4 cut(s) 1004, 1028, 1082, 1088
RsaNI GTAC 4 cut(s) 1003, 1027, 1081, 1087
Rsr2I CGGWCCG 1 cut(s) 149
RsrII CGGWCCG 1 cut(s) 149
SacI GAGCTC 2 cut(s) 225, 807
SacII CCGCGG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 318
Sau3AI GATC 5 cut(s) 144, 433, 537, 652, 1036
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 266, 942, 1127
SduI GDGCHC 2 cut(s) 225, 807
SfaNI GCATC 9 cut(s) 130, 343, 391, 426, 658, 805, 848, 871, 982
SfcI CTRYAG 2 cut(s) 915, 1044
Sfr303I CCGCGG 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 61
SgrBI CCGCGG 1 cut(s) 252
SinI GGWCC 1 cut(s) 149
Sse9I AATT 4 cut(s) 364, 452, 829, 1156
SspMI CTAG 1 cut(s) 171
SstI GAGCTC 2 cut(s) 225, 807
StyD4I CCNGG 3 cut(s) 264, 940, 1125
TaaI ACNGT 2 cut(s) 470, 580
TaiI ACGT 1 cut(s) 827
TaqI TCGA 8 cut(s) 30, 291, 732, 791, 807, 827, 833, 888
TaqII GACCGA 1 cut(s) 137
TasI AATT 4 cut(s) 364, 452, 829, 1156
TauI GCSGC 5 cut(s) 160, 204, 251, 1145, 1148
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 8 cut(s) 179, 204, 207, 932, 935, 1064, 1139, 1148
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 513, 701, 1128
TspGWI ACGGA 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 1021
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 3 cut(s) 364, 452, 829
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 1 cut(s) 171
ZraI GACGTC 1 cut(s) 825
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.