Rh7DG123000

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003252
Physical Location & Seq
Forward (+)
10397812 .. 10398927
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG123000.1

Sequence Viewer

Length: 1116 bp
ATGGCCGGAAAGCCTCCGCCGGCGAAGAAGGTTAGATTTCCGAAGGGGAAGAAGGTGAAGCCGGAAGACGAACAAGCCAGAGTCGGTGGCGGTGGCGATGCGATCGGTCCGACGCCGCAGACGGACGCTAGCCTCGCTGCGAAAGAGCGCGCGAAGCGCCGCAGCAGCCAAATCTCCGAGCTCTGCAAGGACGACGACGCCTCCGCCGCTGAGGTCAGTTACCGGGGACTGGACTACGAGAACTTCGTCGAGGACGGCGTTCAGTTTGAGCCGTTTAACTTGGAGAAGGAGAGAGAAGAAGGCTATTTTGATGCGGATGGGAATTTTGTGGAGTATGTGGAGAAGAATCAAGTGAAGGATGCTTGGCTTGATAGCATCACCAAAGCTGTTGATCCAGAAACGACGAAGAAATTCGCTGCGAAAAACGGTGGTGGGGGTGAAGGTGAAGGTGATGATGAAGTTGATCAGGATTTGAGTTCCGATGAGATTGGGAAGATTAAGAGGCGGATTGCGGATGTGCTGGAGCCGGAGGAGACTGTGTTGCAGGCTCTGAGGAGGCTGAAGGGGAACAAGAAGGAGAAGATGTCGGCGGAGACGAAGGCGGTGTTTGATCAGTTGACTGAGGATGCTATGGTGTTGATGATGAAGAATGGGGAGAACAATGTGTATGATGAGGAGAAGGAGGTTTTCGAGAGGGAGGCGCAGGGGTATGAGAGTTTGGCTAAGGCGAGAATGGGGGGAGGGAAGTCGATATTGGAGGAGCTCGAAACTGATGCTGGGACGTCGAATTCGATTGCATCCATTGGTGGTGGTGGTGGTGGTGTGGCTGATGATGATGCATTCGATATGTTTGGGGATGATGATGAGCCTGCAGTTGTGGCGAATGCTGCTGCGCCCGGTTTGGAGAATAATGGTGGAGGATTGGGGAATGATTATGTGTTTGATGATGCTTCTGGGTACTATTATAGCCACAGCTTGGGGTACTATTATGATCCAACTACAGGGTTGTATTGCTCAGCTGCTTCGGGGTTGTGGTACTCGTACAATGAGGAGACTGGGGCATATGATGAAGTTGCACACCAGGCACCTGAGGCTGCCGCCGCTGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

371

Amino Acids

39.97

Weight (kDa)

4.39

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 310 - 358 4e-17 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 785
AccB1I GGYRCC 1 cut(s) 1084
AccB7I CCANNNNNTGG 1 cut(s) 976
AccII CGCG 2 cut(s) 150, 152
AclWI GGATC 2 cut(s) 386, 986
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 322, 410, 787
AcuI CTGAAG 1 cut(s) 581
AcyI GRCGYC 3 cut(s) 113, 198, 782
AfaI GTAC 4 cut(s) 959, 983, 1037, 1043
AfiI CCNNNNNNNGG 3 cut(s) 229, 976, 1001
AjnI CCWGG 1 cut(s) 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AluBI AGCT 5 cut(s) 181, 386, 763, 975, 1019
AluI AGCT 5 cut(s) 181, 386, 763, 975, 1019
Alw21I GWGCWC 2 cut(s) 183, 765
Alw26I GTCTC 3 cut(s) 527, 587, 1046
AlwI GGATC 2 cut(s) 386, 986
AlwNI CAGNNNCTG 1 cut(s) 550
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 9 cut(s) 137, 162, 165, 416, 887, 890, 1019, 1094, 1103
ApoI RAATTY 3 cut(s) 322, 410, 787
ArsI GACNNNNNNTTYG 2 cut(s) 772, 804
Asp700I GAANNNNTTC 1 cut(s) 410
AspLEI GCGC 5 cut(s) 150, 152, 159, 703, 895
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 2 cut(s) 224, 897
AsuHPI GGTGA 5 cut(s) 67, 370, 449, 455, 461
AsuNHI GCTAGC 1 cut(s) 128
AvaII GGWCC 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 1089
BanI GGYRCC 1 cut(s) 1084
BanII GRGCYC 2 cut(s) 183, 765
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 183, 765
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 9 cut(s) 124, 174, 177, 403, 874, 877, 1006, 1081, 1090
BccI CCATC 1 cut(s) 311
BceAI ACGGC 2 cut(s) 256, 271
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BciT130I CCWGG 1 cut(s) 1082
BclI TGATCA 2 cut(s) 463, 610
BcnI CCSGG 2 cut(s) 224, 897
BcoDI GTCTC 3 cut(s) 527, 587, 1046
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 2 cut(s) 870, 999
BfoI RGCGCY 1 cut(s) 160
BlpI GCTNAGC 1 cut(s) 1015
Bme1390I CCNGG 3 cut(s) 224, 897, 1082
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 525, 1086
BmrFI CCNGG 3 cut(s) 224, 897, 1082
BmrI ACTGGG 1 cut(s) 1065
BmsI GCATC 9 cut(s) 88, 301, 349, 384, 616, 763, 806, 826, 937
BmtI GCTAGC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 1065
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 542
Bpu10I CCTNAGC 2 cut(s) 210, 723
Bpu1102I GCTNAGC 1 cut(s) 1015
BpuMI CCSGG 2 cut(s) 224, 897
BsaHI GRCGYC 3 cut(s) 113, 198, 782
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 6 cut(s) 185, 215, 524, 554, 569, 599
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 976, 1001
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 234, 1060
Bse21I CCTNAGG 1 cut(s) 1089
BseBI CCWGG 1 cut(s) 1082
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 6 cut(s) 322, 364, 520, 631, 797, 862
BseLI CCNNNNNNNGG 3 cut(s) 229, 976, 1001
BseMII CTCAG 5 cut(s) 201, 542, 612, 1029, 1080
BseNI ACTGG 2 cut(s) 234, 1060
BsePI GCGCGC 1 cut(s) 148
BseRI GAGGAG 5 cut(s) 545, 568, 689, 773, 1064
BseXI GCAGC 9 cut(s) 124, 174, 177, 403, 874, 877, 1006, 1081, 1090
BseYI CCCAGC 1 cut(s) 776
Bsh1236I CGCG 2 cut(s) 150, 152
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 1084
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 183, 765
BsiSI CCGG 6 cut(s) 6, 20, 62, 223, 527, 897
BslFI GGGAC 2 cut(s) 240, 793
BslI CCNNNNNNNGG 3 cut(s) 229, 976, 1001
BsmAI GTCTC 3 cut(s) 527, 587, 1046
BsmBI CGTCTC 1 cut(s) 587
BsmFI GGGAC 2 cut(s) 240, 793
BsmI GAATGC 2 cut(s) 839, 889
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 183, 765
Bsp143I GATC 5 cut(s) 102, 391, 463, 610, 991
Bsp1720I GCTNAGC 1 cut(s) 1015
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 5 cut(s) 202, 543, 613, 1028, 1081
BspFNI CGCG 2 cut(s) 150, 152
BspLI GGNNCC 2 cut(s) 525, 1086
BspMAI CTGCAG 1 cut(s) 874
BspOI GCTAGC 1 cut(s) 132
BspPI GGATC 2 cut(s) 386, 986
BspT107I GGYRCC 1 cut(s) 1084
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 2 cut(s) 234, 1060
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 223
BssHII GCGCGC 1 cut(s) 148
BssMI GATC 5 cut(s) 102, 391, 463, 610, 991
BssNI GRCGYC 3 cut(s) 113, 198, 782
Bst2UI CCWGG 1 cut(s) 1082
Bst4CI ACNGT 2 cut(s) 428, 538
BstACI GRCGYC 3 cut(s) 113, 198, 782
BstC8I GCNNGC 5 cut(s) 21, 130, 150, 546, 870
BstDEI CTNAG 6 cut(s) 210, 551, 621, 723, 1015, 1089
BstF5I GGATG 6 cut(s) 322, 364, 520, 631, 797, 862
BstFNI CGCG 2 cut(s) 150, 152
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 5 cut(s) 150, 152, 159, 703, 895
BstKTI GATC 5 cut(s) 105, 394, 466, 613, 994
BstMAI GTCTC 3 cut(s) 527, 587, 1046
BstMBI GATC 5 cut(s) 102, 391, 463, 610, 991
BstMCI CGRYCG 1 cut(s) 105
BstNI CCWGG 1 cut(s) 1082
BstSCI CCNGG 3 cut(s) 222, 895, 1080
BstSFI CTRYAG 2 cut(s) 870, 999
BstUI CGCG 2 cut(s) 150, 152
BstV1I GCAGC 9 cut(s) 124, 174, 177, 403, 874, 877, 1006, 1081, 1090
BstV2I GAAGAC 1 cut(s) 72
Bsu36I CCTNAGG 1 cut(s) 1089
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 6 cut(s) 322, 364, 520, 631, 797, 862
Cac8I GCNNGC 5 cut(s) 21, 130, 150, 546, 870
CaiI CAGNNNCTG 1 cut(s) 550
CfoI GCGC 5 cut(s) 150, 152, 159, 703, 895
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 107
CpoI CGGWCCG 1 cut(s) 107
CseI GACGC 3 cut(s) 121, 134, 206
Csp6I GTAC 4 cut(s) 958, 982, 1036, 1042
CspI CGGWCCG 1 cut(s) 107
CviQI GTAC 4 cut(s) 958, 982, 1036, 1042
DdeI CTNAG 6 cut(s) 210, 551, 621, 723, 1015, 1089
DpnI GATC 5 cut(s) 104, 393, 465, 612, 993
DpnII GATC 5 cut(s) 102, 391, 463, 610, 991
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 4 cut(s) 6, 193, 520, 605
Ecl136II GAGCTC 2 cut(s) 181, 763
Eco24I GRGCYC 2 cut(s) 183, 765
Eco47I GGWCC 1 cut(s) 107
Eco53kI GAGCTC 2 cut(s) 181, 763
Eco57I CTGAAG 1 cut(s) 581
Eco81I CCTNAGG 1 cut(s) 1089
EcoICRI GAGCTC 2 cut(s) 181, 763
EcoRI GAATTC 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 1080
EcoT22I ATGCAT 1 cut(s) 841
EcoT38I GRGCYC 2 cut(s) 183, 765
Esp3I CGTCTC 1 cut(s) 587
FaqI GGGAC 2 cut(s) 240, 793
FauNDI CATATG 1 cut(s) 1063
FbaI TGATCA 2 cut(s) 463, 610
FokI GGATG 6 cut(s) 329, 371, 527, 638, 784, 869
FriOI GRGCYC 2 cut(s) 183, 765
FspBI CTAG 1 cut(s) 129
GlaI GCGC 5 cut(s) 149, 151, 158, 702, 894
GsaI CCCAGC 1 cut(s) 780
GsuI CTGGAG 1 cut(s) 542
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 1 cut(s) 5
HapII CCGG 6 cut(s) 6, 20, 62, 223, 527, 897
HgaI GACGC 3 cut(s) 121, 134, 206
HhaI GCGC 5 cut(s) 150, 152, 159, 703, 895
Hin1I GRCGYC 3 cut(s) 113, 198, 782
Hin6I GCGC 5 cut(s) 148, 150, 157, 701, 893
HinP1I GCGC 5 cut(s) 148, 150, 157, 701, 893
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 2 cut(s) 81, 346
HpaII CCGG 6 cut(s) 6, 20, 62, 223, 527, 897
HphI GGTGA 5 cut(s) 67, 370, 449, 455, 461
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 5 cut(s) 42, 111, 178, 481, 552
Hpy188III TCNNGA 3 cut(s) 395, 467, 691
Hpy8I GTNNAC 1 cut(s) 618
Hpy99I CGWCG 6 cut(s) 115, 197, 200, 251, 406, 787
HpyCH4III ACNGT 2 cut(s) 428, 538
HpyCH4IV ACGT 1 cut(s) 782
HpyCH4V TGCA 6 cut(s) 186, 544, 797, 839, 872, 1076
HpyF3I CTNAG 6 cut(s) 210, 551, 621, 723, 1015, 1089
HpySE526I ACGT 1 cut(s) 782
Hsp92I GRCGYC 3 cut(s) 113, 198, 782
HspAI GCGC 5 cut(s) 148, 150, 157, 701, 893
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Ksp22I TGATCA 2 cut(s) 463, 610
Kzo9I GATC 5 cut(s) 102, 391, 463, 610, 991
LmnI GCTCC 2 cut(s) 523, 760
Lsp1109I GCAGC 9 cut(s) 124, 174, 177, 403, 874, 877, 1006, 1081, 1090
LweI GCATC 9 cut(s) 88, 301, 349, 384, 616, 763, 806, 826, 937
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 782
MaeIII GTNAC 1 cut(s) 218
MalI GATC 5 cut(s) 104, 393, 465, 612, 993
MboI GATC 5 cut(s) 102, 391, 463, 610, 991
MboII GAAGA 9 cut(s) 37, 61, 77, 308, 355, 418, 505, 592, 658
MhlI GDGCHC 2 cut(s) 183, 765
MluCI AATT 4 cut(s) 322, 410, 787, 1111
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 2 cut(s) 134, 1019
Mph1103I ATGCAT 1 cut(s) 841
MreI CGCCGGCG 1 cut(s) 19
MroNI GCCGGC 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 410
MseI TTAA 2 cut(s) 276, 498
MspA1I CMGCKG 3 cut(s) 209, 1019, 1103
MspI CCGG 6 cut(s) 6, 20, 62, 223, 527, 897
MspR9I CCNGG 3 cut(s) 224, 897, 1082
Mva1269I GAATGC 2 cut(s) 839, 889
MvaI CCWGG 1 cut(s) 1082
MvnI CGCG 2 cut(s) 150, 152
NaeI GCCGGC 1 cut(s) 21
NciI CCSGG 2 cut(s) 224, 897
NdeI CATATG 1 cut(s) 1063
NdeII GATC 5 cut(s) 102, 391, 463, 610, 991
NgoMIV GCCGGC 1 cut(s) 19
NheI GCTAGC 1 cut(s) 128
NlaIV GGNNCC 2 cut(s) 525, 1086
NsiI ATGCAT 1 cut(s) 841
PauI GCGCGC 1 cut(s) 148
PcsI WCGNNNNNNNCGW 4 cut(s) 243, 255, 593, 788
PctI GAATGC 2 cut(s) 839, 889
PdiI GCCGGC 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 1 cut(s) 346
PflMI CCANNNNNTGG 1 cut(s) 976
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp124BI GAGCTC 2 cut(s) 183, 765
Psp6I CCWGG 1 cut(s) 1080
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 1 cut(s) 1080
PspN4I GGNNCC 2 cut(s) 525, 1086
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 874
PstNI CAGNNNCTG 1 cut(s) 550
PteI GCGCGC 1 cut(s) 148
PvuI CGATCG 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 4 cut(s) 959, 983, 1037, 1043
RsaNI GTAC 4 cut(s) 958, 982, 1036, 1042
Rsr2I CGGWCCG 1 cut(s) 107
RsrII CGGWCCG 1 cut(s) 107
SacI GAGCTC 2 cut(s) 183, 765
SaqAI TTAA 2 cut(s) 276, 498
Sau3AI GATC 5 cut(s) 102, 391, 463, 610, 991
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 3 cut(s) 224, 897, 1082
SduI GDGCHC 2 cut(s) 183, 765
SfaNI GCATC 9 cut(s) 88, 301, 349, 384, 616, 763, 806, 826, 937
SfcI CTRYAG 2 cut(s) 870, 999
SgrAI CRCCGGYG 1 cut(s) 19
SinI GGWCC 1 cut(s) 107
Sse9I AATT 4 cut(s) 322, 410, 787, 1111
SspMI CTAG 1 cut(s) 129
SstI GAGCTC 2 cut(s) 183, 765
StyD4I CCNGG 3 cut(s) 222, 895, 1080
TaaI ACNGT 2 cut(s) 428, 538
TaiI ACGT 1 cut(s) 785
TaqI TCGA 7 cut(s) 249, 690, 749, 765, 785, 791, 843
TaqII GACCGA 1 cut(s) 95
TasI AATT 4 cut(s) 322, 410, 787, 1111
TauI GCSGC 5 cut(s) 118, 162, 209, 1100, 1103
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 276, 498
Tru9I TTAA 2 cut(s) 276, 498
TseI GCWGC 9 cut(s) 137, 162, 165, 416, 887, 890, 1019, 1094, 1103
TspDTI ATGAA 3 cut(s) 471, 659, 1083
TspGWI ACGGA 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 976
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 3 cut(s) 322, 410, 787
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 1 cut(s) 129
ZraI GACGTC 1 cut(s) 783
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.