Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003252

Physical Location & Seq

Genomic Coordinates Forward (+)

9663415 .. 9664572

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG124800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCACGCCCCAATCTGAAACGCTCCTTCGAAGACGACGACATGGCCGGAAAGCCTCCGCCGGCGAAGAAGGTTAGGTTTCCGAAGGGGAAGAAGGTGAAGCCGGAAGACGAACAAGCCAGAGTCGGTGGCGGTGGCGATGCGATCGGTCCGACGCCGCAGACGGACGCTAGCCTCGCTGCGAAAGAGCGCGCGAAGCGCCGCAGCAGCCAAATCTCCGAGCTCTGCAAGGACGACGACGCCTCCGCTGCTGAGGTCAGTTACCGGGGACTGGACTACGAGAACTTCGTCGAGGACGGCGTTCAGTTTGAGCCGTTTAACTTGGAGAAGGAGAGAGAAGAAGGCTATTTTGATGCGGATGGGAATTTTGTGGAGTATGTGGAGAAGAATCAAGTGAAGGATGCTTGGCTTGATAGCATCACCAAAGCTGTTGATCCAGAAACGACGAAGAAATTCGCTGAGAAAAACGATCAAGAGGCGGATTGCGGATGTGCTGGAGCCGGAGGAGACTGTTTTGCAGGCTCTGAGGAGGCTGAAGGGGAACAAGAAGGAGAAGATGTCGGCGGAGACGAAGGCGGGTTGTATTGCTCAGCTGCGTCGGGGTTGTGGTACTCGTACAATGAGGAGACTGGGGCATATGATGAAGTTGCACACCAGGCACCTGAGGCTGCCGCCGCTGCTGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.7

Weight (kDa)

4.37

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09390 AT5G09390
fragaria_vesca	FvH4_4g13240 FvH4_5g07000
malus_domestica	MD05G1045100.v1.1 MD14G1166200.v1.1
prunus_persica	Prupe.5G160300_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1
pyrus_communis	pycom05g03760
rosa_chinensis	RchiOBHm_Chr7g0191681 RchiOBHm_Chr7g0224681
rosa_laevigata	RLG00000002642 RLG00000004434
rosa_multiflora	Rmu_sc0001123.1_g000011 Rmu_sc0018746.1_g000005 Rmu_sc0032119.1_g000001 Rmu_sc0035406.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438520 Rroxscaffold_3G00263650
rosa_rugosa	Rorug06G0510900
rosa_samantha	Rh7AG120100 Rh7AG377800 Rh7BG122200 Rh7CG124800 Rh7CG397000 Rh7DG123000
rosa_wichuraiana	Rw7G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	658
AccII	CGCG	2 cut(s)	192, 194
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	364, 452
AcuI	CTGAAG	1 cut(s)	555
AcyI	GRCGYC	2 cut(s)	155, 240
AfaI	GTAC	2 cut(s)	611, 617
AfiI	CCNNNNNNNGG	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	3 cut(s)	223, 428, 593
AluI	AGCT	3 cut(s)	223, 428, 593
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	501, 561, 620
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	7 cut(s)	179, 204, 207, 248, 593, 668, 677
ApoI	RAATTY	2 cut(s)	364, 452
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	3 cut(s)	192, 194, 201
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	109, 412
AsuII	TTCGAA	1 cut(s)	30
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	663
BanI	GGYRCC	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	39, 114
Bbv12I	GWGCWC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	7 cut(s)	166, 216, 219, 235, 580, 655, 664
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	2 cut(s)	298, 313
BciT130I	CCWGG	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	3 cut(s)	501, 561, 620
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	202
BlpI	GCTNAGC	1 cut(s)	589
Bme1390I	CCNGG	2 cut(s)	266, 656
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	499, 660
BmrFI	CCNGG	2 cut(s)	266, 656
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	4 cut(s)	130, 343, 391, 426
BmtI	GCTAGC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	639
BpiI	GAAGAC	2 cut(s)	39, 114
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	589
Bpu14I	TTCGAA	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	266
BsaHI	GRCGYC	2 cut(s)	155, 240
BsaJI	CCNNGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 543, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	276, 634
Bse21I	CCTNAGG	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	3 cut(s)	364, 406, 494
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	5 cut(s)	243, 450, 516, 603, 654
BseNI	ACTGG	2 cut(s)	276, 634
BsePI	GCGCGC	1 cut(s)	190
BseRI	GAGGAG	3 cut(s)	519, 542, 638
BseXI	GCAGC	7 cut(s)	166, 216, 219, 235, 580, 655, 664
Bsh1236I	CGCG	2 cut(s)	192, 194
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	658
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	5 cut(s)	48, 62, 104, 265, 501
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	3 cut(s)	501, 561, 620
BsmBI	CGTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	3 cut(s)	144, 433, 469
Bsp1720I	GCTNAGC	1 cut(s)	589
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	5 cut(s)	244, 451, 517, 602, 655
BspFNI	CGCG	2 cut(s)	192, 194
BspLI	GGNNCC	2 cut(s)	499, 660
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	428
BspT104I	TTCGAA	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	658
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	276, 634
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	265
BssHII	GCGCGC	1 cut(s)	190
BssMI	GATC	3 cut(s)	144, 433, 469
BssNI	GRCGYC	2 cut(s)	155, 240
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	1 cut(s)	512
BstACI	GRCGYC	2 cut(s)	155, 240
BstBI	TTCGAA	1 cut(s)	30
BstC8I	GCNNGC	4 cut(s)	63, 172, 192, 520
BstDEI	CTNAG	5 cut(s)	252, 459, 525, 589, 663
BstF5I	GGATG	3 cut(s)	364, 406, 494
BstFNI	CGCG	2 cut(s)	192, 194
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	3 cut(s)	192, 194, 201
BstKTI	GATC	3 cut(s)	147, 436, 472
BstMAI	GTCTC	3 cut(s)	501, 561, 620
BstMBI	GATC	3 cut(s)	144, 433, 469
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	9 cut(s)	176, 196, 198, 207, 248, 656, 665, 674, 677
BstNI	CCWGG	1 cut(s)	656
BstSCI	CCNGG	2 cut(s)	264, 654
BstUI	CGCG	2 cut(s)	192, 194
BstV1I	GCAGC	7 cut(s)	166, 216, 219, 235, 580, 655, 664
BstV2I	GAAGAC	2 cut(s)	39, 114
Bsu36I	CCTNAGG	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	364, 406, 494
Cac8I	GCNNGC	4 cut(s)	63, 172, 192, 520
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	3 cut(s)	192, 194, 201
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	149
CpoI	CGGWCCG	1 cut(s)	149
CseI	GACGC	4 cut(s)	163, 176, 248, 585
Csp6I	GTAC	2 cut(s)	610, 616
CspI	CGGWCCG	1 cut(s)	149
CviAII	CATG	1 cut(s)	43
CviQI	GTAC	2 cut(s)	610, 616
DdeI	CTNAG	5 cut(s)	252, 459, 525, 589, 663
DpnI	GATC	3 cut(s)	146, 435, 471
DpnII	GATC	3 cut(s)	144, 433, 469
EaeI	YGGCCR	1 cut(s)	45
EciI	GGCGGA	3 cut(s)	48, 494, 579
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	555
Eco81I	CCTNAGG	1 cut(s)	663
EcoICRI	GAGCTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	654
EcoT38I	GRGCYC	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	561
FaeI	CATG	1 cut(s)	46
FaiI	YATR	4 cut(s)	44, 378, 637, 639
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	569
FauNDI	CATATG	1 cut(s)	637
FokI	GGATG	3 cut(s)	371, 413, 501
FriOI	GRGCYC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	3 cut(s)	191, 193, 200
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	5 cut(s)	48, 62, 104, 265, 501
HgaI	GACGC	4 cut(s)	163, 176, 248, 585
HhaI	GCGC	3 cut(s)	192, 194, 201
Hin1I	GRCGYC	2 cut(s)	155, 240
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	3 cut(s)	190, 192, 199
HinP1I	GCGC	3 cut(s)	190, 192, 199
HinfI	GANTC	2 cut(s)	123, 388
HpaII	CCGG	5 cut(s)	48, 62, 104, 265, 501
HphI	GGTGA	2 cut(s)	109, 412
Hpy188I	TCNGA	5 cut(s)	18, 84, 153, 220, 526
Hpy188III	TCNNGA	2 cut(s)	437, 473
Hpy99I	CGWCG	7 cut(s)	41, 157, 239, 242, 293, 448, 601
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	3 cut(s)	228, 518, 650
HpyF10VI	GCNNNNNNNGC	9 cut(s)	176, 196, 198, 207, 248, 656, 665, 674, 677
HpyF3I	CTNAG	5 cut(s)	252, 459, 525, 589, 663
Hsp92I	GRCGYC	2 cut(s)	155, 240
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	3 cut(s)	190, 192, 199
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	144, 433, 469
LmnI	GCTCC	2 cut(s)	29, 497
Lsp1109I	GCAGC	7 cut(s)	166, 216, 219, 235, 580, 655, 664
LweI	GCATC	4 cut(s)	130, 343, 391, 426
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	3, 260
MalI	GATC	3 cut(s)	146, 435, 471
MboI	GATC	3 cut(s)	144, 433, 469
MboII	GAAGA	8 cut(s)	44, 79, 103, 119, 350, 397, 460, 566
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	3 cut(s)	364, 452, 685
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	176
MreI	CGCCGGCG	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	3 cut(s)	248, 593, 677
MspI	CCGG	5 cut(s)	48, 62, 104, 265, 501
MspR9I	CCNGG	2 cut(s)	266, 656
MvaI	CCWGG	1 cut(s)	656
MvnI	CGCG	2 cut(s)	192, 194
MwoI	GCNNNNNNNGC	9 cut(s)	176, 196, 198, 207, 248, 656, 665, 674, 677
NaeI	GCCGGC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	266
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	3 cut(s)	144, 433, 469
NgoMIV	GCCGGC	1 cut(s)	61
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	499, 660
NmuCI	GTSAC	1 cut(s)	3
NspV	TTCGAA	1 cut(s)	30
PauI	GCGCGC	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	4 cut(s)	36, 285, 297, 567
PdiI	GCCGGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	388
Ple19I	CGATCG	1 cut(s)	147
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	499, 660
PspPI	GGNCC	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	524
PteI	GCGCGC	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	2 cut(s)	611, 617
RsaNI	GTAC	2 cut(s)	610, 616
Rsr2I	CGGWCCG	1 cut(s)	149
RsrII	CGGWCCG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	3 cut(s)	144, 433, 469
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	2 cut(s)	266, 656
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	8 cut(s)	75, 80, 99, 225, 258, 430, 595, 664
SfaNI	GCATC	4 cut(s)	130, 343, 391, 426
SfuI	TTCGAA	1 cut(s)	30
SgrAI	CRCCGGYG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	3 cut(s)	364, 452, 685
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	264, 654
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	2 cut(s)	30, 291
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	3 cut(s)	364, 452, 685
TauI	GCSGC	4 cut(s)	160, 204, 674, 677
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	7 cut(s)	179, 204, 207, 248, 593, 668, 677
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	2 cut(s)	364, 452
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.