Rh7BG122200

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003252
Physical Location & Seq
Forward (+)
9071255 .. 9072364
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG122200.1

Sequence Viewer

Length: 1110 bp
ATGGCCGGAAAGCCTCCGCCGGCGAAGAAGGTTAGGTTTCCGAAGGGGAAGAAGGTGAAGCCGGAAGACGAACAAGCCAGAGTCGGTGGCGATGCGATCGGTCCGACGCCGCAGACGGACGCTAGCCTCGCTGCGAAAGAGCGCGCGAAGCGCCGCAGCAGCCAAATCTCCGAGCTCTGCAAGGACGACGACGCCTCCGCCGCTGAGGTCAGTTACCGGGGACTGGACTACGAGAACTTCGTCGAGGACGGCGTTCAGTTTGAGCCGTTTAACTTGGAGAAGGAGAGAGAAGAAGGCTATTTTGATGCGGATGGGAATTTTGTGGAGTATGTGGAGAAGAATCAAGTGAAGGATGCTTGGCTTGATAGCATCACCAAAGCTGTTGATCCAGAAACGACGAAGAAATTCGCTGAGAAAAACGGTGGTGGTGGTGAAGGTGATGATGAAGTTGGTGAGGATTTGAGTTCCGATGAGATTGGGAAGATTAAGAGGCGGATTGCAGATGTGCTGGAGCCTGAGGAGACTGTTTTGCAGGCTCTGAGGAGGCTGAAGGGGAACAAGAAGGAGAAGATGTCGGCGGAGACGAAGGCGGTGTTTGATCAGTTGACTGAGGATGCTATGGTGTTGATGATGAAGAATGGGGAGAACAATGTGTATGATGAGGAGAAGGAGGTTTTCGAGAGGGAGGCGCAGGGGTATGAGAGTTTGGCTAAGGCGAGAATGGGGGGAGGGAAGTCGATATTGGAGGAGCTCGAAACTGATGCTGGGACGTCGAATTCGATTGCGTCCATTGGTGGTGGTGGTGGTGGTGGTGTGGCTGATGATGATGCATTCGATATGTTTGGGGATGATGATGATGAGCCGGCAGTTGTGGCGAATGCTGCTGCGCCGGGTTTGGAGAATAATGGTGGAGGATTGGGGAATGATTATGTGTTTGATGATGCTTCTGGGTACTATTATAGTCACAGCTTGGGGTACTATTATGATCCAACTACAGGGTTGTATTGCTCAGCTGCTTCGGGGTTGTGGTACTCGTACAATGAGGAGACTGGGGCATATGATGAAGTCGCACACCAGGCACCTGAGGCTGCCGCCGCTGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

39.84

Weight (kDa)

4.38

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 308 - 356 4e-17 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 773
AccB1I GGYRCC 1 cut(s) 1078
AccII CGCG 2 cut(s) 144, 146
AclWI GGATC 2 cut(s) 380, 980
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 316, 404, 775
AcuI CTGAAG 1 cut(s) 569
AcyI GRCGYC 3 cut(s) 107, 192, 770
AfaI GTAC 4 cut(s) 953, 977, 1031, 1037
AfiI CCNNNNNNNGG 2 cut(s) 223, 995
AjnI CCWGG 1 cut(s) 1074
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 5 cut(s) 175, 380, 751, 969, 1013
AluI AGCT 5 cut(s) 175, 380, 751, 969, 1013
Alw21I GWGCWC 2 cut(s) 177, 753
Alw26I GTCTC 3 cut(s) 515, 575, 1040
AlwI GGATC 2 cut(s) 380, 980
AlwNI CAGNNNCTG 1 cut(s) 538
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 8 cut(s) 131, 156, 159, 881, 884, 1013, 1088, 1097
ApoI RAATTY 3 cut(s) 316, 404, 775
ArsI GACNNNNNNTTYG 2 cut(s) 760, 792
Asp700I GAANNNNTTC 1 cut(s) 404
AspLEI GCGC 5 cut(s) 144, 146, 153, 691, 889
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 2 cut(s) 218, 891
AsuHPI GGTGA 5 cut(s) 67, 364, 443, 449, 464
AsuNHI GCTAGC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 101
AxyI CCTNAGG 2 cut(s) 516, 1083
BanI GGYRCC 1 cut(s) 1078
BanII GRGCYC 2 cut(s) 177, 753
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 177, 753
BbvCI CCTCAGC 1 cut(s) 204
BbvI GCAGC 8 cut(s) 118, 168, 171, 868, 871, 1000, 1075, 1084
BccI CCATC 1 cut(s) 305
BceAI ACGGC 2 cut(s) 250, 265
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 1 cut(s) 1076
BclI TGATCA 1 cut(s) 598
BcnI CCSGG 2 cut(s) 218, 891
BcoDI GTCTC 3 cut(s) 515, 575, 1040
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 993
BfoI RGCGCY 1 cut(s) 154
BlpI GCTNAGC 1 cut(s) 1009
Bme1390I CCNGG 3 cut(s) 218, 891, 1076
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 513, 1080
BmrFI CCNGG 3 cut(s) 218, 891, 1076
BmrI ACTGGG 1 cut(s) 1059
BmsI GCATC 8 cut(s) 82, 295, 343, 378, 604, 751, 817, 931
BmtI GCTAGC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 1059
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 530
Bpu10I CCTNAGC 2 cut(s) 204, 711
Bpu1102I GCTNAGC 1 cut(s) 1009
BpuMI CCSGG 2 cut(s) 218, 891
BsaHI GRCGYC 3 cut(s) 107, 192, 770
BsaJI CCNNGG 1 cut(s) 217
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 557, 587
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 995
Bse118I RCCGGY 2 cut(s) 19, 862
Bse1I ACTGG 2 cut(s) 228, 1054
Bse21I CCTNAGG 2 cut(s) 516, 1083
BseBI CCWGG 1 cut(s) 1076
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 4 cut(s) 316, 358, 619, 853
BseLI CCNNNNNNNGG 2 cut(s) 223, 995
BseMII CTCAG 7 cut(s) 195, 402, 507, 530, 600, 1023, 1074
BseNI ACTGG 2 cut(s) 228, 1054
BsePI GCGCGC 1 cut(s) 142
BseRI GAGGAG 5 cut(s) 533, 556, 677, 761, 1058
BseXI GCAGC 8 cut(s) 118, 168, 171, 868, 871, 1000, 1075, 1084
BseYI CCCAGC 1 cut(s) 764
Bsh1236I CGCG 2 cut(s) 144, 146
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 1078
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 177, 753
BsiSI CCGG 6 cut(s) 6, 20, 62, 217, 863, 890
BslFI GGGAC 2 cut(s) 234, 781
BslI CCNNNNNNNGG 2 cut(s) 223, 995
BsmAI GTCTC 3 cut(s) 515, 575, 1040
BsmBI CGTCTC 1 cut(s) 575
BsmFI GGGAC 2 cut(s) 234, 781
BsmI GAATGC 2 cut(s) 830, 883
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 177, 753
Bsp143I GATC 4 cut(s) 96, 385, 598, 985
Bsp1720I GCTNAGC 1 cut(s) 1009
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 7 cut(s) 196, 403, 508, 531, 601, 1022, 1075
BspFNI CGCG 2 cut(s) 144, 146
BspLI GGNNCC 2 cut(s) 513, 1080
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 2 cut(s) 380, 980
BspT107I GGYRCC 1 cut(s) 1078
BsrFI RCCGGY 2 cut(s) 19, 862
BsrI ACTGG 2 cut(s) 228, 1054
BssAI RCCGGY 2 cut(s) 19, 862
BssECI CCNNGG 1 cut(s) 217
BssHII GCGCGC 1 cut(s) 142
BssMI GATC 4 cut(s) 96, 385, 598, 985
BssNI GRCGYC 3 cut(s) 107, 192, 770
Bst2UI CCWGG 1 cut(s) 1076
Bst4CI ACNGT 2 cut(s) 422, 526
BstACI GRCGYC 3 cut(s) 107, 192, 770
BstC8I GCNNGC 5 cut(s) 21, 124, 144, 534, 864
BstDEI CTNAG 8 cut(s) 204, 411, 516, 539, 609, 711, 1009, 1083
BstF5I GGATG 4 cut(s) 316, 358, 619, 853
BstFNI CGCG 2 cut(s) 144, 146
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 5 cut(s) 144, 146, 153, 691, 889
BstKTI GATC 4 cut(s) 99, 388, 601, 988
BstMAI GTCTC 3 cut(s) 515, 575, 1040
BstMBI GATC 4 cut(s) 96, 385, 598, 985
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 1 cut(s) 1076
BstSCI CCNGG 3 cut(s) 216, 889, 1074
BstSFI CTRYAG 1 cut(s) 993
BstUI CGCG 2 cut(s) 144, 146
BstV1I GCAGC 8 cut(s) 118, 168, 171, 868, 871, 1000, 1075, 1084
BstV2I GAAGAC 1 cut(s) 72
Bsu36I CCTNAGG 2 cut(s) 516, 1083
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 4 cut(s) 316, 358, 619, 853
Cac8I GCNNGC 5 cut(s) 21, 124, 144, 534, 864
CaiI CAGNNNCTG 1 cut(s) 538
CfoI GCGC 5 cut(s) 144, 146, 153, 691, 889
Cfr10I RCCGGY 2 cut(s) 19, 862
Cfr13I GGNCC 1 cut(s) 101
CpoI CGGWCCG 1 cut(s) 101
CseI GACGC 4 cut(s) 115, 128, 200, 774
Csp6I GTAC 4 cut(s) 952, 976, 1030, 1036
CspI CGGWCCG 1 cut(s) 101
CviQI GTAC 4 cut(s) 952, 976, 1030, 1036
DdeI CTNAG 8 cut(s) 204, 411, 516, 539, 609, 711, 1009, 1083
DpnI GATC 4 cut(s) 98, 387, 600, 987
DpnII GATC 4 cut(s) 96, 385, 598, 985
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 4 cut(s) 6, 187, 508, 593
Ecl136II GAGCTC 2 cut(s) 175, 751
Eco24I GRGCYC 2 cut(s) 177, 753
Eco47I GGWCC 1 cut(s) 101
Eco53kI GAGCTC 2 cut(s) 175, 751
Eco57I CTGAAG 1 cut(s) 569
Eco81I CCTNAGG 2 cut(s) 516, 1083
EcoICRI GAGCTC 2 cut(s) 175, 751
EcoRI GAATTC 1 cut(s) 775
EcoRII CCWGG 1 cut(s) 1074
EcoT22I ATGCAT 1 cut(s) 832
EcoT38I GRGCYC 2 cut(s) 177, 753
Esp3I CGTCTC 1 cut(s) 575
FaqI GGGAC 2 cut(s) 234, 781
FauNDI CATATG 1 cut(s) 1057
FbaI TGATCA 1 cut(s) 598
FokI GGATG 4 cut(s) 323, 365, 626, 860
FriOI GRGCYC 2 cut(s) 177, 753
FspBI CTAG 1 cut(s) 123
GlaI GCGC 5 cut(s) 143, 145, 152, 690, 888
GsaI CCCAGC 1 cut(s) 768
GsuI CTGGAG 1 cut(s) 530
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 1 cut(s) 5
HapII CCGG 6 cut(s) 6, 20, 62, 217, 863, 890
HgaI GACGC 4 cut(s) 115, 128, 200, 774
HhaI GCGC 5 cut(s) 144, 146, 153, 691, 889
Hin1I GRCGYC 3 cut(s) 107, 192, 770
Hin6I GCGC 5 cut(s) 142, 144, 151, 689, 887
HinP1I GCGC 5 cut(s) 142, 144, 151, 689, 887
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HinfI GANTC 2 cut(s) 81, 340
HpaII CCGG 6 cut(s) 6, 20, 62, 217, 863, 890
HphI GGTGA 5 cut(s) 67, 364, 443, 449, 464
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 5 cut(s) 42, 105, 172, 469, 540
Hpy188III TCNNGA 2 cut(s) 389, 679
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 6 cut(s) 109, 191, 194, 245, 400, 775
HpyCH4III ACNGT 2 cut(s) 422, 526
HpyCH4IV ACGT 1 cut(s) 770
HpyCH4V TGCA 4 cut(s) 180, 500, 532, 830
HpyF3I CTNAG 8 cut(s) 204, 411, 516, 539, 609, 711, 1009, 1083
HpySE526I ACGT 1 cut(s) 770
Hsp92I GRCGYC 3 cut(s) 107, 192, 770
HspAI GCGC 5 cut(s) 142, 144, 151, 689, 887
KroI GCCGGC 2 cut(s) 19, 862
KroNI GCCGGC 2 cut(s) 21, 864
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 4 cut(s) 96, 385, 598, 985
LmnI GCTCC 2 cut(s) 511, 748
Lsp1109I GCAGC 8 cut(s) 118, 168, 171, 868, 871, 1000, 1075, 1084
LweI GCATC 8 cut(s) 82, 295, 343, 378, 604, 751, 817, 931
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 770
MaeIII GTNAC 2 cut(s) 212, 962
MalI GATC 4 cut(s) 98, 387, 600, 987
MboI GATC 4 cut(s) 96, 385, 598, 985
MboII GAAGA 9 cut(s) 37, 61, 77, 302, 349, 412, 493, 580, 646
MhlI GDGCHC 2 cut(s) 177, 753
MluCI AATT 4 cut(s) 316, 404, 775, 1105
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 2 cut(s) 128, 1013
Mph1103I ATGCAT 1 cut(s) 832
MreI CGCCGGCG 1 cut(s) 19
MroNI GCCGGC 2 cut(s) 19, 862
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 2 cut(s) 270, 486
MspA1I CMGCKG 3 cut(s) 203, 1013, 1097
MspI CCGG 6 cut(s) 6, 20, 62, 217, 863, 890
MspR9I CCNGG 3 cut(s) 218, 891, 1076
Mva1269I GAATGC 2 cut(s) 830, 883
MvaI CCWGG 1 cut(s) 1076
MvnI CGCG 2 cut(s) 144, 146
NaeI GCCGGC 2 cut(s) 21, 864
NciI CCSGG 2 cut(s) 218, 891
NdeI CATATG 1 cut(s) 1057
NdeII GATC 4 cut(s) 96, 385, 598, 985
NgoMIV GCCGGC 2 cut(s) 19, 862
NheI GCTAGC 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 513, 1080
NmuCI GTSAC 1 cut(s) 962
NsiI ATGCAT 1 cut(s) 832
PauI GCGCGC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 4 cut(s) 237, 249, 581, 776
PctI GAATGC 2 cut(s) 830, 883
PdiI GCCGGC 2 cut(s) 21, 864
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 340
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp124BI GAGCTC 2 cut(s) 177, 753
Psp6I CCWGG 1 cut(s) 1074
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 1 cut(s) 1074
PspN4I GGNNCC 2 cut(s) 513, 1080
PspPI GGNCC 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 538
PteI GCGCGC 1 cut(s) 142
PvuI CGATCG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 4 cut(s) 953, 977, 1031, 1037
RsaNI GTAC 4 cut(s) 952, 976, 1030, 1036
Rsr2I CGGWCCG 1 cut(s) 101
RsrII CGGWCCG 1 cut(s) 101
SacI GAGCTC 2 cut(s) 177, 753
SaqAI TTAA 2 cut(s) 270, 486
Sau3AI GATC 4 cut(s) 96, 385, 598, 985
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 3 cut(s) 218, 891, 1076
SduI GDGCHC 2 cut(s) 177, 753
SfaNI GCATC 8 cut(s) 82, 295, 343, 378, 604, 751, 817, 931
SfcI CTRYAG 1 cut(s) 993
SgrAI CRCCGGYG 1 cut(s) 19
SinI GGWCC 1 cut(s) 101
Sse9I AATT 4 cut(s) 316, 404, 775, 1105
SspMI CTAG 1 cut(s) 123
SstI GAGCTC 2 cut(s) 177, 753
StyD4I CCNGG 3 cut(s) 216, 889, 1074
TaaI ACNGT 2 cut(s) 422, 526
TaiI ACGT 1 cut(s) 773
TaqI TCGA 7 cut(s) 243, 678, 737, 753, 773, 779, 834
TaqII GACCGA 1 cut(s) 89
TasI AATT 4 cut(s) 316, 404, 775, 1105
TauI GCSGC 5 cut(s) 112, 156, 203, 1094, 1097
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 2 cut(s) 270, 486
Tru9I TTAA 2 cut(s) 270, 486
TseFI GTSAC 1 cut(s) 962
TseI GCWGC 8 cut(s) 131, 156, 159, 881, 884, 1013, 1088, 1097
Tsp45I GTSAC 1 cut(s) 962
TspDTI ATGAA 3 cut(s) 459, 647, 1077
TspGWI ACGGA 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 3 cut(s) 316, 404, 775
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 1 cut(s) 123
ZraI GACGTC 1 cut(s) 771
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.