Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003252

Physical Location & Seq

Genomic Coordinates Reverse (-)

8818027 .. 8827762

Gene Structure 9736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G061500.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAATCCAATCCTTCACGCTCCAATCTGAAACGCCCTTTCTTTGAAGACGACGGCTCCGACAAACCCCAAGCGCAAAAAAGGGTTAGATTCCCCAAGGGGAAGAAGGCGAGGCCAGGAGATGAAGCCGTAAACAGAGGCAGACCTGAGGAGGCGGTTGGGGTTGGGATTGGCCCGACTCCATTGACGGACCCTCGTTCTGCCGCCAAAGAACGGGCCAAGCGCCGAAGCCAAATCACAACTGAGCTTTTCAGTGAAGAGACTGCGGGCATTCTCAACGATGTCTCTGCTGCTGAAGTTACTTACAAGGATTACGACGACTTTGTTGAGGATGGGATTCCAATAGAACCTTTCAACTTGAACAAGGAGAGGGAAGAAGGTTATTTTGATGCAGATGGAAATTTTGTTGAATATGCCAATAAAAATGAAGTCGAGGATGCATGGCTTGATAGTGTTGAAGTTGATACAAAATATGCTGGAAAAGGGTTTGCAGTAACAAAAGATGATGATGATGTCCAAGATTTGTCTTCTGATGATGTTGGGAAGATTAAAAGACGTATTGCTGATGTGCTTGAGCCAGGGGAAACGGTTTTACAAGCTTTGAGGAGATTGAAGGGAACTTCAAATAACAAGAAGGAGAAGATGTCGGCTGAAACAAAGCGTGTATTTGACCAATTAACTGAAGATGCCACAAACCTGATGGATAATGGTGAATCCAATGTCTATCATGAAAAGAAAGAGATGTTTGAGCGTGAGGCAGAAGGATATGAGAGCTTAGCTCGGGCAAGAAGGGAAGGCACCTCCACAAGTGCATACCAGGGGAAATCTGTTCTTAGCATGGAGTGGGGCACTTCCTCTGATGTAACCAGTCCAGGAGTACCCTCTTCAATACTGCCCGAAACTGCTGTTGGTTCTTCCAATTCTAATGCACCCGCTGCAGAAACCACGAGTAATGGTGCTGATGCGTTTGATATATTTGCGGAAGATGATGAACATGTAATTGCTAAACCATCTTCTGAAGGAAGTGATGTGATCTGTGGCCCTAATTCTGATGGAGTCAGCTCACTGTCTTCAAACAACTTAAACGCTTATTCTGAGAATGGAGTTTTGCAAAATGATTATGTGTTTGATGAGTCTTCTGGGTACTATTATAGCAGCAGTTTGGGATATTATTATGATCCGTCCACAGGATTCTATTGCTCTGCTGCGTCGGGGCTGTGGAACATGGCTTTCCAATTACAAGTCATGACAACACAAGGCATAGCAACTGAAAACTTTCTGGATTTACTGATAATGTTGGGGACGATAATAGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

440

Amino Acids

48.17

Weight (kDa)

4.49

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09390 AT5G09390
fragaria_vesca	FvH4_4g13240 FvH4_5g07000
malus_domestica	MD05G1045100.v1.1 MD14G1166200.v1.1
prunus_persica	Prupe.5G160300_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1
pyrus_communis	pycom05g03760
rosa_chinensis	RchiOBHm_Chr7g0191681 RchiOBHm_Chr7g0224681
rosa_laevigata	RLG00000002642 RLG00000004434
rosa_multiflora	Rmu_sc0001123.1_g000011 Rmu_sc0018746.1_g000005 Rmu_sc0032119.1_g000001 Rmu_sc0035406.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438520 Rroxscaffold_3G00263650
rosa_rugosa	Rorug06G0510900
rosa_samantha	Rh7AG120100 Rh7AG377800 Rh7BG122200 Rh7CG124800 Rh7CG397000 Rh7DG123000
rosa_wichuraiana	Rw7G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	797
AciI	CCGC	5 cut(s)	155, 204, 266, 933, 980
AclWI	GGATC	1 cut(s)	1172
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	3 cut(s)	315, 702, 1038
AfaI	GTAC	2 cut(s)	879, 1145
AfiI	CCNNNNNNNGG	2 cut(s)	213, 1187
AflIII	ACRYGT	1 cut(s)	994
AgsI	TTSAA	9 cut(s)	47, 355, 361, 410, 458, 613, 624, 888, 1074
AjnI	CCWGG	4 cut(s)	115, 577, 816, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	891, 923
AluBI	AGCT	5 cut(s)	247, 599, 774, 779, 1062
AluI	AGCT	5 cut(s)	247, 599, 774, 779, 1062
Alw26I	GTCTC	2 cut(s)	254, 289
AlwI	GGATC	1 cut(s)	1172
Ama87I	CYCGRG	1 cut(s)	780
AoxI	GGCC	4 cut(s)	113, 172, 216, 1039
ApeKI	GCWGC	4 cut(s)	290, 935, 1155, 1205
ApoI	RAATTY	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	1275
AspLEI	GCGC	2 cut(s)	76, 225
AspS9I	GGNCC	4 cut(s)	173, 190, 216, 1040
AsuHPI	GGTGA	1 cut(s)	722
AvaI	CYCGRG	1 cut(s)	780
AvaII	GGWCC	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	147
BaeGI	GKGCMC	1 cut(s)	851
BanI	GGYRCC	1 cut(s)	797
BauI	CACGAG	1 cut(s)	946
BbsI	GAAGAC	4 cut(s)	54, 519, 1062, 1128
BbvI	GCAGC	4 cut(s)	277, 922, 1167, 1192
BccI	CCATC	5 cut(s)	326, 389, 694, 1018, 1046
BceAI	ACGGC	2 cut(s)	70, 113
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	4 cut(s)	117, 579, 818, 873
BcoDI	GTCTC	2 cut(s)	254, 289
BfmI	CTRYAG	1 cut(s)	936
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	5 cut(s)	204, 291, 936, 1156, 1206
BlpI	GCTNAGC	1 cut(s)	775
BlsI	GCNGC	5 cut(s)	205, 292, 937, 1157, 1207
Bme1390I	CCNGG	4 cut(s)	117, 579, 818, 873
Bme18I	GGWCC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	780
BmgT120I	GGNCC	4 cut(s)	173, 190, 216, 1040
BmiI	GGNNCC	3 cut(s)	58, 192, 799
BmrFI	CCNGG	4 cut(s)	117, 579, 818, 873
BmsI	GCATC	4 cut(s)	379, 427, 676, 952
BpiI	GAAGAC	4 cut(s)	54, 519, 1062, 1128
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
Bpu1102I	GCTNAGC	1 cut(s)	775
BpuEI	CTTGAG	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	96, 578, 817
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 629, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 1187
Bse1I	ACTGG	1 cut(s)	867
Bse21I	CCTNAGG	1 cut(s)	147
BseBI	CCWGG	4 cut(s)	117, 579, 818, 873
BseDI	CCNNGG	3 cut(s)	96, 578, 817
BseGI	GGATG	2 cut(s)	337, 442
BseLI	CCNNNNNNNGG	2 cut(s)	213, 1187
BseMII	CTCAG	3 cut(s)	138, 234, 1086
BseNI	ACTGG	1 cut(s)	867
BseRI	GAGGAG	2 cut(s)	164, 619
BseSI	GKGCMC	1 cut(s)	851
BseXI	GCAGC	4 cut(s)	277, 922, 1167, 1192
BshFI	GGCC	4 cut(s)	115, 174, 218, 1041
BshNI	GGYRCC	1 cut(s)	797
BsiHKCI	CYCGRG	1 cut(s)	780
BslFI	GGGAC	1 cut(s)	1315
BslI	CCNNNNNNNGG	2 cut(s)	213, 1187
BsmAI	GTCTC	2 cut(s)	254, 289
BsmFI	GGGAC	1 cut(s)	1315
BsmI	GAATGC	1 cut(s)	270
BsnI	GGCC	4 cut(s)	115, 174, 218, 1041
BsoBI	CYCGRG	1 cut(s)	780
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp143I	GATC	2 cut(s)	1032, 1177
Bsp1720I	GCTNAGC	1 cut(s)	775
BspACI	CCGC	5 cut(s)	155, 204, 266, 933, 980
BspANI	GGCC	4 cut(s)	115, 174, 218, 1041
BspCNI	CTCAG	3 cut(s)	139, 235, 1087
BspHI	TCATGA	2 cut(s)	727, 1245
BspLI	GGNNCC	3 cut(s)	58, 192, 799
BspMAI	CTGCAG	1 cut(s)	940
BspPI	GGATC	1 cut(s)	1172
BspT107I	GGYRCC	1 cut(s)	797
BsrI	ACTGG	1 cut(s)	867
BssECI	CCNNGG	3 cut(s)	96, 578, 817
BssMI	GATC	2 cut(s)	1032, 1177
BssSI	CACGAG	1 cut(s)	946
BssT1I	CCWWGG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	946
Bst2UI	CCWGG	4 cut(s)	117, 579, 818, 873
Bst4CI	ACNGT	2 cut(s)	589, 1068
Bst6I	CTCTTC	2 cut(s)	252, 889
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	5 cut(s)	147, 243, 775, 833, 1095
BstF5I	GGATG	2 cut(s)	337, 442
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	76, 225
BstKTI	GATC	2 cut(s)	1035, 1180
BstMAI	GTCTC	2 cut(s)	254, 289
BstMBI	GATC	2 cut(s)	1032, 1177
BstMWI	GCNNNNNNNGC	1 cut(s)	935
BstNI	CCWGG	4 cut(s)	117, 579, 818, 873
BstNSI	RCATGY	1 cut(s)	998
BstSCI	CCNGG	4 cut(s)	115, 577, 816, 871
BstSFI	CTRYAG	1 cut(s)	936
BstSLI	GKGCMC	1 cut(s)	851
BstV1I	GCAGC	4 cut(s)	277, 922, 1167, 1192
BstV2I	GAAGAC	4 cut(s)	54, 519, 1062, 1128
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	4 cut(s)	115, 174, 218, 1041
BtsCI	GGATG	2 cut(s)	337, 442
BtsIMutI	CAGTG	2 cut(s)	259, 1064
Cac8I	GCNNGC	1 cut(s)	268
CciI	TCATGA	2 cut(s)	727, 1245
CfoI	GCGC	2 cut(s)	76, 225
Cfr13I	GGNCC	4 cut(s)	173, 190, 216, 1040
CseI	GACGC	1 cut(s)	1197
Csp6I	GTAC	2 cut(s)	878, 1144
CviAII	CATG	6 cut(s)	441, 728, 838, 995, 1225, 1246
CviQI	GTAC	2 cut(s)	878, 1144
DdeI	CTNAG	5 cut(s)	147, 243, 775, 833, 1095
DpnI	GATC	2 cut(s)	1034, 1179
DpnII	GATC	2 cut(s)	1032, 1177
Eam1104I	CTCTTC	2 cut(s)	252, 889
EarI	CTCTTC	2 cut(s)	252, 889
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	315, 702, 1038
Eco81I	CCTNAGG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	780
EcoRII	CCWGG	4 cut(s)	115, 577, 816, 871
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	6 cut(s)	444, 731, 841, 998, 1228, 1249
FaqI	GGGAC	1 cut(s)	1315
FatI	CATG	6 cut(s)	440, 727, 837, 994, 1224, 1245
FauI	CCCGC	2 cut(s)	259, 940
Fnu4HI	GCNGC	5 cut(s)	204, 291, 936, 1156, 1206
FokI	GGATG	2 cut(s)	344, 449
Fsp4HI	GCNGC	5 cut(s)	204, 291, 936, 1156, 1206
GlaI	GCGC	2 cut(s)	75, 224
GluI	GCNGC	5 cut(s)	204, 291, 936, 1156, 1206
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	4 cut(s)	115, 174, 218, 1041
HgaI	GACGC	1 cut(s)	1197
HhaI	GCGC	2 cut(s)	76, 225
Hin1II	CATG	6 cut(s)	444, 731, 841, 998, 1228, 1249
Hin6I	GCGC	2 cut(s)	74, 223
HinP1I	GCGC	2 cut(s)	74, 223
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	8 cut(s)	5, 90, 178, 337, 713, 1056, 1133, 1191
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	2 cut(s)	133, 1185
Hpy188I	TCNGA	7 cut(s)	30, 61, 532, 859, 1018, 1051, 1096
Hpy188III	TCNNGA	3 cut(s)	728, 1246, 1280
Hpy8I	GTNNAC	2 cut(s)	133, 1185
Hpy99I	CGWCG	3 cut(s)	56, 320, 1213
HpyAV	CCTTC	9 cut(s)	24, 100, 371, 607, 628, 755, 783, 788, 1013
HpyCH4III	ACNGT	2 cut(s)	589, 1068
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	7 cut(s)	392, 440, 491, 812, 929, 938, 1111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	935
HpyF3I	CTNAG	5 cut(s)	147, 243, 775, 833, 1095
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	6 cut(s)	444, 731, 841, 998, 1228, 1249
HspAI	GCGC	2 cut(s)	74, 223
Kzo9I	GATC	2 cut(s)	1032, 1177
LmnI	GCTCC	2 cut(s)	26, 62
Lsp1109I	GCAGC	4 cut(s)	277, 922, 1167, 1192
LweI	GCATC	4 cut(s)	379, 427, 676, 952
MaeII	ACGT	1 cut(s)	556
MaeIII	GTNAC	3 cut(s)	298, 493, 862
MalI	GATC	2 cut(s)	1034, 1179
MboI	GATC	2 cut(s)	1032, 1177
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	6 cut(s)	400, 674, 919, 999, 1045, 1235
MlyI	GAGTC	3 cut(s)	172, 1065, 1142
MmeI	TCCRAC	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	1275
MseI	TTAA	3 cut(s)	549, 677, 1082
MspA1I	CMGCKG	1 cut(s)	935
MspR9I	CCNGG	4 cut(s)	117, 579, 818, 873
Mva1269I	GAATGC	1 cut(s)	270
MvaI	CCWGG	4 cut(s)	117, 579, 818, 873
MwoI	GCNNNNNNNGC	1 cut(s)	935
NdeII	GATC	2 cut(s)	1032, 1177
NlaIII	CATG	6 cut(s)	444, 731, 841, 998, 1228, 1249
NlaIV	GGNNCC	3 cut(s)	58, 192, 799
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	998
PagI	TCATGA	2 cut(s)	727, 1245
PciI	ACATGT	1 cut(s)	994
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	1275
PfeI	GAWTC	5 cut(s)	5, 90, 337, 713, 1191
PfoI	TCCNGGA	1 cut(s)	871
PkrI	GCNGC	5 cut(s)	205, 292, 937, 1157, 1207
PleI	GAGTC	3 cut(s)	172, 1064, 1141
PpsI	GAGTC	3 cut(s)	172, 1064, 1141
PscI	ACATGT	1 cut(s)	994
Psp6I	CCWGG	4 cut(s)	115, 577, 816, 871
PspGI	CCWGG	4 cut(s)	115, 577, 816, 871
PspN4I	GGNNCC	3 cut(s)	58, 192, 799
PspPI	GGNCC	4 cut(s)	173, 190, 216, 1040
PstI	CTGCAG	1 cut(s)	940
RsaI	GTAC	2 cut(s)	879, 1145
RsaNI	GTAC	2 cut(s)	878, 1144
SaqAI	TTAA	3 cut(s)	549, 677, 1082
SatI	GCNGC	5 cut(s)	204, 291, 936, 1156, 1206
Sau3AI	GATC	2 cut(s)	1032, 1177
Sau96I	GGNCC	4 cut(s)	173, 190, 216, 1040
SchI	GAGTC	3 cut(s)	172, 1065, 1142
ScrFI	CCNGG	4 cut(s)	117, 579, 818, 873
SduI	GDGCHC	1 cut(s)	851
SfaNI	GCATC	4 cut(s)	379, 427, 676, 952
SfcI	CTRYAG	1 cut(s)	936
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	6 cut(s)	400, 674, 919, 999, 1045, 1235
SsiI	CCGC	5 cut(s)	155, 204, 266, 933, 980
StyD4I	CCNGG	4 cut(s)	115, 577, 816, 871
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	589, 1068
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	1 cut(s)	432
TasI	AATT	6 cut(s)	400, 674, 919, 999, 1045, 1235
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	5 cut(s)	5, 90, 337, 713, 1191
Tru1I	TTAA	3 cut(s)	549, 677, 1082
Tru9I	TTAA	3 cut(s)	549, 677, 1082
TscAI	CASTG	2 cut(s)	259, 1071
TseI	GCWGC	4 cut(s)	290, 935, 1155, 1205
TspDTI	ATGAA	4 cut(s)	138, 441, 744, 1005
TspGWI	ACGGA	2 cut(s)	203, 1170
TspRI	CASTG	2 cut(s)	259, 1071
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	400
XceI	RCATGY	1 cut(s)	998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	1275
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.