Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003252

Physical Location & Seq

Genomic Coordinates Reverse (-)

16850878 .. 16851780

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCGGCCAAGCCTCCACCGGCGAAGAAGGTCAAGTTTCCGAAAGGGCAGAAGGTGAAGCCAGAAGAAGAACAAGCCAGAGTCGGTGGCGGAGGCAATGCGATTGGGAAGAAAGCTATTGATGAGGATGGGAATTTTGTGGAGAAGAATCGAGTCAAGAATGCCTGGCTTGATAGCCTGAAAAAGGCTATTAAGAGGTGGATTGCGGATATGCTGGAGACGAAAGAGACTGTTTTGCAGGCTCTAGCTAAGTTGAAGGGGAACAAGAAGGAGAAGACGACAACGGAAACGAAGACGGTGTTTGATAAGTTGACTGAGGATATGGTGTTGATAATGAAGAATGGGGAGAACAATGTGTATGATGAGGAGGAGGTTTTTGAGAGGGAGGTGCAGGGGTATGAGAGTTTGGCTAAGGCTAGAATGGGCGAAGGCAAGTCGATACTGGAGGAGCTTAAGAGTGATACTGAGGCTTTGATTTCGATTGCGCCAATTGGTGTTGCTAGGGGACCAAAATGGCTACTCCTTGTATTGAAATGGAATCTATGTCAGCTGGAAATGAAGAGTTTACAGATCACAGAGAGAGTAATCAAAAAGAAAAGAACCAAATTTTTAGGATCTAAGATCAAGTTTACCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.96

Weight (kDa)

9.63

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09390 AT5G09390
fragaria_vesca	FvH4_4g13240 FvH4_5g07000
malus_domestica	MD05G1045100.v1.1 MD14G1166200.v1.1
prunus_persica	Prupe.5G160300_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1
pyrus_communis	pycom05g03760
rosa_chinensis	RchiOBHm_Chr7g0191681 RchiOBHm_Chr7g0224681
rosa_laevigata	RLG00000002642 RLG00000004434
rosa_multiflora	Rmu_sc0001123.1_g000011 Rmu_sc0018746.1_g000005 Rmu_sc0032119.1_g000001 Rmu_sc0035406.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438520 Rroxscaffold_3G00263650
rosa_rugosa	Rorug06G0510900
rosa_samantha	Rh7AG120100 Rh7AG377800 Rh7BG122200 Rh7CG124800 Rh7CG397000 Rh7DG123000
rosa_wichuraiana	Rw7G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	90, 206
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	133, 605
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	256, 532
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	4 cut(s)	116, 248, 451, 550
AluI	AGCT	4 cut(s)	116, 248, 451, 550
Alw26I	GTCTC	2 cut(s)	212, 221
AlwI	GGATC	1 cut(s)	622
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	133, 605
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	506
BbsI	GAAGAC	2 cut(s)	281, 299
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	212, 221
BfaI	CTAG	3 cut(s)	245, 417, 501
BfrI	CTTAAG	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	1 cut(s)	166
BpiI	GAAGAC	2 cut(s)	281, 299
BpmI	CTGGAG	2 cut(s)	236, 464
Bpu10I	CCTNAGC	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	306, 456
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	3 cut(s)	380, 383, 461
BsgI	GTGCAG	1 cut(s)	410
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	212, 221
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	519
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	570, 614, 621
BspACI	CCGC	2 cut(s)	90, 206
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	307, 457
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	622
BspTI	CTTAAG	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	3 cut(s)	570, 614, 621
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	232, 298
Bst6I	CTCTTC	1 cut(s)	554
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	5 cut(s)	249, 315, 411, 465, 618
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	3 cut(s)	573, 617, 624
BstMAI	GTCTC	2 cut(s)	212, 221
BstMBI	GATC	3 cut(s)	570, 614, 621
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstV2I	GAAGAC	2 cut(s)	281, 299
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	506
DdeI	CTNAG	5 cut(s)	249, 315, 411, 465, 618
DpnI	GATC	3 cut(s)	572, 616, 623
DpnII	GATC	3 cut(s)	570, 614, 621
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
EciI	GGCGGA	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	506
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	212
FaiI	YATR	5 cut(s)	212, 323, 360, 399, 544
FaqI	GGGAC	1 cut(s)	519
FokI	GGATG	1 cut(s)	140
FspBI	CTAG	3 cut(s)	245, 417, 501
GlaI	GCGC	1 cut(s)	486
GsuI	CTGGAG	2 cut(s)	236, 464
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	487
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	4 cut(s)	81, 148, 153, 538
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	312, 566, 630
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	3 cut(s)	312, 566, 630
HpyAV	CCTTC	5 cut(s)	22, 46, 250, 262, 422
HpyCH4III	ACNGT	2 cut(s)	232, 298
HpyCH4V	TGCA	2 cut(s)	238, 391
HpyF3I	CTNAG	5 cut(s)	249, 315, 411, 465, 618
HspAI	GCGC	1 cut(s)	485
Kzo9I	GATC	3 cut(s)	570, 614, 621
LmnI	GCTCC	1 cut(s)	448
MaeI	CTAG	3 cut(s)	245, 417, 501
MalI	GATC	3 cut(s)	572, 616, 623
MboI	GATC	3 cut(s)	570, 614, 621
MboII	GAAGA	9 cut(s)	37, 77, 80, 121, 157, 286, 304, 349, 571
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	614
MluCI	AATT	3 cut(s)	133, 489, 605
MlyI	GAGTC	2 cut(s)	90, 162
MseI	TTAA	3 cut(s)	192, 453, 637
MspA1I	CMGCKG	1 cut(s)	550
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	570, 614, 621
NlaIV	GGNNCC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	148, 538
PleI	GAGTC	2 cut(s)	89, 161
PpsI	GAGTC	2 cut(s)	89, 161
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	550
SaqAI	TTAA	3 cut(s)	192, 453, 637
Sau3AI	GATC	3 cut(s)	570, 614, 621
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	2 cut(s)	90, 162
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	9 cut(s)	33, 57, 118, 200, 250, 375, 390, 453, 552
SgrAI	CRCCGGYG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	133, 489, 605
SsiI	CCGC	2 cut(s)	90, 206
SspMI	CTAG	3 cut(s)	245, 417, 501
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	232, 298
TaqI	TCGA	3 cut(s)	151, 437, 479
TasI	AATT	3 cut(s)	133, 489, 605
TfiI	GAWTC	2 cut(s)	148, 538
Tru1I	TTAA	3 cut(s)	192, 453, 637
Tru9I	TTAA	3 cut(s)	192, 453, 637
TspDTI	ATGAA	2 cut(s)	350, 572
TspGWI	ACGGA	1 cut(s)	299
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	506
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	2 cut(s)	133, 605
XspI	CTAG	3 cut(s)	245, 417, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.