Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003252

Physical Location & Seq

Genomic Coordinates Forward (+)

14142222 .. 14143409

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G160300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAATCGAATCAGCCATCACGATCAAATCTGAAACGCAAGGTGATCTCCGAAGAGTCCGATTCCGATTCCGATTCCGGCAAACCCACAGCGGAAAAGAGGGTTAGGTTTCCAAAGGGGAAGAAGGCGAGGCTGGGAGATGAAGCGGTAAACATACGCAGAGCTGAGGACGACGACGAGATTGGGATTGGGTTGGCGGACCCTCGTTCTGCCGCCAAAGAGCGAGAGAAGCGACGGAGCCAGAGAAATCACGACAGGTTTGGGGAGGATGGGATTGGCGAAGATGTGTCCAAGGCGGAAGTTTCATACGAAGGATTGGACTCTGAGAACTTGATGGAGGATGGGATTCCAATAGAGCCTTTTAACTTGGACAAGGAGAGGGAAGAGGGTTATTTTGATGCGGATGGGAATTTTGTTGAATATGCCCCCAATGAGAAGAACAAGGTCAAGGATGCTTGGCTTGACAGTGTTGAAGCTGGTGAGACAAAATTATATGCTCGGAAAACAGAAGATGAAGATGGTGATGGTGATGGTGATGGTGAAGATTTACCTTTGTCTGATGGTGATGATATCGGGAAGATTAAACGGCGAATTGCTGATGTGCTGGAGGATGGAGAGACTGTTTTGCAGGCTTTGAGGAGGTTGAAGGGAGGTTCTTCTTCTGCAAGGAACAAGAGGGAGAAGATGCCCGCTGAGACAAAGCGCGTTTTCGATCAGTTGACAGAGGATGCTGTGACCCTGATGGACAAGTATGGGGAGTACAATGTGAATCATGAGAAGAGGGAGATTTTTGAGCGTGAGGCTCAAGGGTATGAGAGTTTAGCTAGGGCAAGAAGCCAAGGCGCGGCATTGGGTACGAATAATGGTGCTGAATCTGCTGGAGATGAATATGATATGTTTGGTGAAGATGATGAAGATGCAACTGCTCAAGCATCGAATTCGGATGGGGTTGGGGTTGGTCCCTCGCAATTGGAGAATGATTATGTGTTGGATGAGTCTTCTGGGTACTATTATAGCAGCAGTTTGGGGTATTATTATGATCCATCTACTGGACTCTATTGCTCTGCTGCTTCTGGGCTATGGTACTCGTTCAATGAGGAGACTGGAGCATATGATGAAATCACTCACCATGGCCAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGCTGAGACCGGTGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

396

Amino Acids

43.33

Weight (kDa)

4.44

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09390 AT5G09390
fragaria_vesca	FvH4_4g13240 FvH4_5g07000
malus_domestica	MD05G1045100.v1.1 MD14G1166200.v1.1
prunus_persica	Prupe.5G160300_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1
pyrus_communis	pycom05g03760
rosa_chinensis	RchiOBHm_Chr7g0191681 RchiOBHm_Chr7g0224681
rosa_laevigata	RLG00000002642 RLG00000004434
rosa_multiflora	Rmu_sc0001123.1_g000011 Rmu_sc0018746.1_g000005 Rmu_sc0032119.1_g000001 Rmu_sc0035406.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438520 Rroxscaffold_3G00263650
rosa_rugosa	Rorug06G0510900
rosa_samantha	Rh7AG120100 Rh7AG377800 Rh7BG122200 Rh7CG124800 Rh7CG397000 Rh7DG123000
rosa_wichuraiana	Rw7G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1049
AccII	CGCG	2 cut(s)	705, 845
AciI	CCGC	8 cut(s)	92, 146, 197, 213, 296, 401, 690, 845
AclWI	GGATC	1 cut(s)	1034
AcoI	YGGCCR	1 cut(s)	1132
AcsI	RAATTY	2 cut(s)	409, 937
AfaI	GTAC	4 cut(s)	761, 856, 1007, 1085
AfiI	CCNNNNNNNGG	3 cut(s)	844, 1049, 1135
AgeI	ACCGGT	1 cut(s)	1175
AgsI	TTSAA	4 cut(s)	419, 473, 646, 1093
AjnI	CCWGG	1 cut(s)	1134
AluBI	AGCT	3 cut(s)	164, 476, 824
AluI	AGCT	3 cut(s)	164, 476, 824
Alw26I	GTCTC	5 cut(s)	476, 611, 689, 1094, 1166
AlwI	GGATC	1 cut(s)	1034
AoxI	GGCC	1 cut(s)	1132
ApoI	RAATTY	2 cut(s)	409, 937
AsiGI	ACCGGT	1 cut(s)	1175
AspLEI	GCGC	2 cut(s)	705, 845
AspS9I	GGNCC	2 cut(s)	199, 959
AsuHPI	GGTGA	9 cut(s)	55, 491, 533, 539, 545, 551, 575, 914, 1118
AvaII	GGWCC	2 cut(s)	199, 959
BalI	TGGCCA	1 cut(s)	1134
BbsI	GAAGAC	1 cut(s)	990
BbvCI	CCTCAGC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	602
BcgI	CGANNNNNNTGC	2 cut(s)	921, 955
BciT130I	CCWGG	1 cut(s)	1136
BcoDI	GTCTC	5 cut(s)	476, 611, 689, 1094, 1166
BfaI	CTAG	1 cut(s)	825
Bme1390I	CCNGG	1 cut(s)	1136
Bme18I	GGWCC	2 cut(s)	199, 959
BmgT120I	GGNCC	2 cut(s)	199, 959
BmiI	GGNNCC	3 cut(s)	201, 239, 961
BmrFI	CCNGG	1 cut(s)	1136
BmsI	GCATC	7 cut(s)	388, 442, 675, 718, 907, 941, 1156
BpiI	GAAGAC	1 cut(s)	990
BpmI	CTGGAG	3 cut(s)	626, 900, 1125
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	789, 912
BsaI	GGTCTC	1 cut(s)	1166
BsaJI	CCNNGG	3 cut(s)	291, 838, 1129
BsaWI	WCCGGW	1 cut(s)	1175
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	844, 1049, 1135
Bse118I	RCCGGY	1 cut(s)	1175
Bse1I	ACTGG	2 cut(s)	1054, 1108
BseBI	CCWGG	1 cut(s)	1136
BseDI	CCNNGG	3 cut(s)	291, 838, 1129
BseGI	GGATG	8 cut(s)	274, 346, 409, 457, 616, 733, 949, 997
BseLI	CCNNNNNNNGG	3 cut(s)	844, 1049, 1135
BseMII	CTCAG	4 cut(s)	156, 315, 684, 1161
BseNI	ACTGG	2 cut(s)	1054, 1108
BseRI	GAGGAG	2 cut(s)	652, 1112
BseYI	CCCAGC	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	705, 845
BshFI	GGCC	1 cut(s)	1134
BshTI	ACCGGT	1 cut(s)	1175
BsiSI	CCGG	2 cut(s)	78, 1176
BslFI	GGGAC	1 cut(s)	945
BslI	CCNNNNNNNGG	3 cut(s)	844, 1049, 1135
BsmAI	GTCTC	5 cut(s)	476, 611, 689, 1094, 1166
BsmFI	GGGAC	1 cut(s)	945
BsnI	GGCC	1 cut(s)	1134
Bso31I	GGTCTC	1 cut(s)	1166
Bsp143I	GATC	4 cut(s)	23, 45, 712, 1039
Bsp19I	CCATGG	1 cut(s)	1129
BspACI	CCGC	8 cut(s)	92, 146, 197, 213, 296, 401, 690, 845
BspANI	GGCC	1 cut(s)	1134
BspCNI	CTCAG	4 cut(s)	157, 316, 685, 1162
BspFNI	CGCG	2 cut(s)	705, 845
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	3 cut(s)	201, 239, 961
BspPI	GGATC	1 cut(s)	1034
BspTNI	GGTCTC	1 cut(s)	1166
BsrFI	RCCGGY	1 cut(s)	1175
BsrI	ACTGG	2 cut(s)	1054, 1108
BssAI	RCCGGY	1 cut(s)	1175
BssECI	CCNNGG	3 cut(s)	291, 838, 1129
BssMI	GATC	4 cut(s)	23, 45, 712, 1039
BssT1I	CCWWGG	3 cut(s)	291, 838, 1129
Bst2UI	CCWGG	1 cut(s)	1136
Bst4CI	ACNGT	2 cut(s)	467, 622
Bst6I	CTCTTC	3 cut(s)	48, 378, 773
BstC8I	GCNNGC	2 cut(s)	630, 690
BstDEI	CTNAG	4 cut(s)	165, 324, 693, 1170
BstDSI	CCRYGG	1 cut(s)	1129
BstF5I	GGATG	8 cut(s)	274, 346, 409, 457, 616, 733, 949, 997
BstFNI	CGCG	2 cut(s)	705, 845
BstHHI	GCGC	2 cut(s)	705, 845
BstKTI	GATC	4 cut(s)	26, 48, 715, 1042
BstMAI	GTCTC	5 cut(s)	476, 611, 689, 1094, 1166
BstMBI	GATC	4 cut(s)	23, 45, 712, 1039
BstMWI	GCNNNNNNNGC	9 cut(s)	229, 875, 1145, 1148, 1151, 1154, 1157, 1160, 1166
BstNI	CCWGG	1 cut(s)	1136
BstSCI	CCNGG	1 cut(s)	1134
BstUI	CGCG	2 cut(s)	705, 845
BstV2I	GAAGAC	1 cut(s)	990
BsuRI	GGCC	1 cut(s)	1134
BtgI	CCRYGG	1 cut(s)	1129
BtsCI	GGATG	8 cut(s)	274, 346, 409, 457, 616, 733, 949, 997
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	2 cut(s)	630, 690
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	2 cut(s)	705, 845
Cfr10I	RCCGGY	1 cut(s)	1175
Cfr13I	GGNCC	2 cut(s)	199, 959
Csp6I	GTAC	4 cut(s)	760, 855, 1006, 1084
CspAI	ACCGGT	1 cut(s)	1175
CviAII	CATG	2 cut(s)	773, 1130
CviQI	GTAC	4 cut(s)	760, 855, 1006, 1084
DdeI	CTNAG	4 cut(s)	165, 324, 693, 1170
DpnI	GATC	4 cut(s)	25, 47, 714, 1041
DpnII	GATC	4 cut(s)	23, 45, 712, 1039
EaeI	YGGCCR	1 cut(s)	1132
Eam1104I	CTCTTC	3 cut(s)	48, 378, 773
EarI	CTCTTC	3 cut(s)	48, 378, 773
EciI	GGCGGA	2 cut(s)	212, 311
Eco130I	CCWWGG	3 cut(s)	291, 838, 1129
Eco31I	GGTCTC	1 cut(s)	1166
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	199, 959
EcoRI	GAATTC	1 cut(s)	937
EcoRII	CCWGG	1 cut(s)	1134
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	3 cut(s)	291, 838, 1129
ErhI	CCWWGG	3 cut(s)	291, 838, 1129
FaeI	CATG	2 cut(s)	776, 1133
FaqI	GGGAC	1 cut(s)	945
FatI	CATG	2 cut(s)	772, 1129
FauI	CCCGC	1 cut(s)	697
FauNDI	CATATG	1 cut(s)	1111
FokI	GGATG	8 cut(s)	281, 353, 416, 464, 623, 740, 956, 1004
FspBI	CTAG	1 cut(s)	825
GlaI	GCGC	2 cut(s)	704, 844
GsaI	CCCAGC	1 cut(s)	137
GsuI	CTGGAG	3 cut(s)	626, 900, 1125
HaeIII	GGCC	1 cut(s)	1134
HapII	CCGG	2 cut(s)	78, 1176
HhaI	GCGC	2 cut(s)	705, 845
Hin1II	CATG	2 cut(s)	776, 1133
Hin6I	GCGC	2 cut(s)	703, 843
HinP1I	GCGC	2 cut(s)	703, 843
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HpaII	CCGG	2 cut(s)	78, 1176
HphI	GGTGA	9 cut(s)	55, 491, 533, 539, 545, 551, 575, 914, 1118
Hpy166II	GTNNAC	2 cut(s)	151, 720
Hpy188I	TCNGA	9 cut(s)	33, 52, 61, 67, 73, 325, 501, 559, 943
Hpy188III	TCNNGA	4 cut(s)	21, 251, 574, 773
Hpy8I	GTNNAC	2 cut(s)	151, 720
Hpy99I	CGWCG	3 cut(s)	176, 179, 237
HpyAV	CCTTC	3 cut(s)	118, 305, 640
HpyCH4III	ACNGT	2 cut(s)	467, 622
HpyCH4V	TGCA	4 cut(s)	628, 665, 920, 1181
HpyF10VI	GCNNNNNNNGC	9 cut(s)	229, 875, 1145, 1148, 1151, 1154, 1157, 1160, 1166
HpyF3I	CTNAG	4 cut(s)	165, 324, 693, 1170
Hsp92II	CATG	2 cut(s)	776, 1133
HspAI	GCGC	2 cut(s)	703, 843
Kzo9I	GATC	4 cut(s)	23, 45, 712, 1039
LmnI	GCTCC	2 cut(s)	237, 1106
LweI	GCATC	7 cut(s)	388, 442, 675, 718, 907, 941, 1156
MaeI	CTAG	1 cut(s)	825
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	4 cut(s)	25, 47, 714, 1041
MboI	GATC	4 cut(s)	23, 45, 712, 1039
MfeI	CAATTG	1 cut(s)	968
MlsI	TGGCCA	1 cut(s)	1134
MluCI	AATT	6 cut(s)	409, 488, 591, 937, 968, 1183
MluNI	TGGCCA	1 cut(s)	1134
MlyI	GAGTC	4 cut(s)	65, 314, 1004, 1047
MmeI	TCCRAC	1 cut(s)	969
Mox20I	TGGCCA	1 cut(s)	1134
MscI	TGGCCA	1 cut(s)	1134
MseI	TTAA	2 cut(s)	363, 582
Msp20I	TGGCCA	1 cut(s)	1134
MspA1I	CMGCKG	2 cut(s)	92, 692
MspI	CCGG	2 cut(s)	78, 1176
MspR9I	CCNGG	1 cut(s)	1136
MunI	CAATTG	1 cut(s)	968
MvaI	CCWGG	1 cut(s)	1136
MvnI	CGCG	2 cut(s)	705, 845
MwoI	GCNNNNNNNGC	9 cut(s)	229, 875, 1145, 1148, 1151, 1154, 1157, 1160, 1166
NcoI	CCATGG	1 cut(s)	1129
NdeI	CATATG	1 cut(s)	1111
NdeII	GATC	4 cut(s)	23, 45, 712, 1039
NlaIII	CATG	2 cut(s)	776, 1133
NlaIV	GGNNCC	3 cut(s)	201, 239, 961
NmuCI	GTSAC	1 cut(s)	733
PagI	TCATGA	1 cut(s)	772
PfeI	GAWTC	8 cut(s)	5, 10, 62, 68, 74, 346, 769, 872
PflMI	CCANNNNNTGG	1 cut(s)	1049
PinAI	ACCGGT	1 cut(s)	1175
PleI	GAGTC	4 cut(s)	64, 314, 1003, 1047
PpsI	GAGTC	4 cut(s)	64, 314, 1003, 1047
Psp6I	CCWGG	1 cut(s)	1134
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	1134
PspN4I	GGNNCC	3 cut(s)	201, 239, 961
PspPI	GGNCC	2 cut(s)	199, 959
RsaI	GTAC	4 cut(s)	761, 856, 1007, 1085
RsaNI	GTAC	4 cut(s)	760, 855, 1006, 1084
SaqAI	TTAA	2 cut(s)	363, 582
Sau3AI	GATC	4 cut(s)	23, 45, 712, 1039
Sau96I	GGNCC	2 cut(s)	199, 959
SchI	GAGTC	4 cut(s)	65, 314, 1004, 1047
ScrFI	CCNGG	1 cut(s)	1136
SfaNI	GCATC	7 cut(s)	388, 442, 675, 718, 907, 941, 1156
SinI	GGWCC	2 cut(s)	199, 959
SmlI	CTYRAG	2 cut(s)	804, 927
SmoI	CTYRAG	2 cut(s)	804, 927
Sse9I	AATT	6 cut(s)	409, 488, 591, 937, 968, 1183
SsiI	CCGC	8 cut(s)	92, 146, 197, 213, 296, 401, 690, 845
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	1 cut(s)	1134
StyI	CCWWGG	3 cut(s)	291, 838, 1129
TaaI	ACNGT	2 cut(s)	467, 622
TaqI	TCGA	3 cut(s)	8, 711, 935
TasI	AATT	6 cut(s)	409, 488, 591, 937, 968, 1183
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	2 cut(s)	215, 848
TfiI	GAWTC	8 cut(s)	5, 10, 62, 68, 74, 346, 769, 872
Tru1I	TTAA	2 cut(s)	363, 582
Tru9I	TTAA	2 cut(s)	363, 582
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	733
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	6 cut(s)	156, 294, 528, 900, 927, 1131
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	472
Van91I	CCANNNNNTGG	1 cut(s)	1049
VpaK11BI	GGWCC	2 cut(s)	199, 959
XapI	RAATTY	2 cut(s)	409, 937
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.