Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003252

Physical Location & Seq

Genomic Coordinates Reverse (-)

50627378 .. 50628499

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG397000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTCTCAAATGCGATAACTGGGAACAACGGTGGTGGTGGTGAAGGTGATGATGAAATTGGTCAGGATTTGAGTTCCGATGAGATTGGGAAGATTACTGTGTTGCAGGCCCTGACGAGGCTGAAGCGAAACAAGAAGGAGAAGATATCGGCGGAGACGAAGGCGGTGTTTGATCAGTTGACTGAGGATGCTATGGCGTTGATGAAGAACAGGGAGAATAATGTGTATGATGAGGAGAAGGAGGTTTTCGAATGGGAGGCACAGGGGTATGAGAGTTTGGCTAAGGCGAGAATGGGGGGAGGGAAGTCGGTACTGGAGGAGCTCGAAACTAATGCTAGGACGTCGAATTCGATTGCGTCCATTAGTGCTGTTGGTGGTGGTGATTGTGTGGCTAATGATGATGCTTTTGATATGTTTGGGGACGATGATGAGCCTGCAGTTGTGGCGAATGCTGCTGCCCCGGCCACAGCTTGGGGTACTATTATGATCCAGCTACAGGGCTGTATTGCTCAGCTCCGCAATGAGGAGACTAGGGCATATGATGAAGTTGCACAACAGGCGCCTGAGGCTGCCGCCCCTGCTGTGAATCCCAAGCCATTGATACTTGATGAAAATGTCGATGATCAATTGTCCATCTACATCTCACAGACTCACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.49

Weight (kDa)

4.23

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09390 AT5G09390
fragaria_vesca	FvH4_4g13240 FvH4_5g07000
malus_domestica	MD05G1045100.v1.1 MD14G1166200.v1.1
prunus_persica	Prupe.5G160300_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1 Prupe.8G061500_v2.0.a1
pyrus_communis	pycom05g03760
rosa_chinensis	RchiOBHm_Chr7g0191681 RchiOBHm_Chr7g0224681
rosa_laevigata	RLG00000002642 RLG00000004434
rosa_multiflora	Rmu_sc0001123.1_g000011 Rmu_sc0018746.1_g000005 Rmu_sc0032119.1_g000001 Rmu_sc0035406.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438520 Rroxscaffold_3G00263650
rosa_rugosa	Rorug06G0510900
rosa_samantha	Rh7AG120100 Rh7AG377800 Rh7BG122200 Rh7CG124800 Rh7CG397000 Rh7DG123000
rosa_wichuraiana	Rw7G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	471
AciI	CCGC	4 cut(s)	152, 164, 517, 573
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	2 cut(s)	341, 560
AfaI	GTAC	2 cut(s)	312, 478
AfiI	CCNNNNNNNGG	4 cut(s)	117, 471, 496, 523
AluBI	AGCT	4 cut(s)	322, 470, 493, 514
AluI	AGCT	4 cut(s)	322, 470, 493, 514
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	2 cut(s)	149, 521
AlwI	GGATC	1 cut(s)	481
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	108, 462
ApeKI	GCWGC	3 cut(s)	452, 455, 569
ApoI	RAATTY	1 cut(s)	346
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	3 cut(s)	53, 59, 392
AsuII	TTCGAA	1 cut(s)	249
AxyI	CCTNAGG	1 cut(s)	564
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	439, 442, 556
BccI	CCATC	1 cut(s)	641
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BclI	TGATCA	2 cut(s)	172, 622
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	149, 521
BfaI	CTAG	2 cut(s)	336, 531
BfmI	CTRYAG	2 cut(s)	435, 494
BfoI	RGCGCY	1 cut(s)	563
BisI	GCNGC	4 cut(s)	453, 456, 570, 573
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	4 cut(s)	454, 457, 571, 574
Bme1390I	CCNGG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	461
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	178, 391
BmuI	ACTGGG	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	461
BsaHI	GRCGYC	2 cut(s)	341, 560
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 471, 496, 523
Bse1I	ACTGG	2 cut(s)	25, 318
Bse21I	CCTNAGG	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	4 cut(s)	117, 471, 496, 523
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	3 cut(s)	174, 524, 555
BseNI	ACTGG	2 cut(s)	25, 318
BseRI	GAGGAG	3 cut(s)	248, 332, 539
BseXI	GCAGC	3 cut(s)	439, 442, 556
BshFI	GGCC	2 cut(s)	110, 464
BshNI	GGYRCC	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	4 cut(s)	117, 471, 496, 523
BsmAI	GTCTC	2 cut(s)	149, 521
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	110, 464
Bsp119I	TTCGAA	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	172, 486, 622
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	4 cut(s)	152, 164, 517, 573
BspANI	GGCC	2 cut(s)	110, 464
BspCNI	CTCAG	3 cut(s)	175, 523, 556
BspLI	GGNNCC	1 cut(s)	561
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	1 cut(s)	481
BspT104I	TTCGAA	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	559
BsrDI	GCAATG	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	25, 318
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	3 cut(s)	172, 486, 622
BssNI	GRCGYC	2 cut(s)	341, 560
Bst4CI	ACNGT	3 cut(s)	32, 100, 656
BstACI	GRCGYC	2 cut(s)	341, 560
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	108, 435
BstDEI	CTNAG	4 cut(s)	183, 282, 510, 564
BstF5I	GGATG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	3 cut(s)	175, 489, 625
BstMAI	GTCTC	2 cut(s)	149, 521
BstMBI	GATC	3 cut(s)	172, 486, 622
BstMWI	GCNNNNNNNGC	6 cut(s)	443, 452, 461, 557, 566, 578
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	2 cut(s)	435, 494
BstV1I	GCAGC	3 cut(s)	439, 442, 556
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	110, 464
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	108, 435
CaiI	CAGNNNCTG	1 cut(s)	112
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	109
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	311, 477
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviQI	GTAC	2 cut(s)	311, 477
DdeI	CTNAG	4 cut(s)	183, 282, 510, 564
DinI	GGCGCC	1 cut(s)	561
DpnI	GATC	3 cut(s)	174, 488, 624
DpnII	GATC	3 cut(s)	172, 486, 622
EaeI	YGGCCR	1 cut(s)	462
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	564
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	346
EcoRV	GATATC	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	324
EgeI	GGCGCC	1 cut(s)	561
EheI	GGCGCC	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	149
FaiI	YATR	7 cut(s)	194, 228, 270, 413, 485, 538, 540
FaqI	GGGAC	1 cut(s)	434
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	2 cut(s)	172, 622
Fnu4HI	GCNGC	4 cut(s)	453, 456, 570, 573
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	4 cut(s)	453, 456, 570, 573
FspBI	CTAG	2 cut(s)	336, 531
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	4 cut(s)	453, 456, 570, 573
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	110, 464
HapII	CCGG	1 cut(s)	461
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	1 cut(s)	562
Hin1I	GRCGYC	2 cut(s)	341, 560
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	586, 649
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	3 cut(s)	53, 59, 392
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	4 cut(s)	38, 130, 154, 232
HpyCH4III	ACNGT	3 cut(s)	32, 100, 656
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	106, 437, 551
HpyF10VI	GCNNNNNNNGC	6 cut(s)	443, 452, 461, 557, 566, 578
HpyF3I	CTNAG	4 cut(s)	183, 282, 510, 564
HpySE526I	ACGT	1 cut(s)	341
Hsp92I	GRCGYC	2 cut(s)	341, 560
HspAI	GCGC	1 cut(s)	560
KasI	GGCGCC	1 cut(s)	559
Ksp22I	TGATCA	2 cut(s)	172, 622
Kzo9I	GATC	3 cut(s)	172, 486, 622
LmnI	GCTCC	2 cut(s)	319, 519
Lsp1109I	GCAGC	3 cut(s)	439, 442, 556
LweI	GCATC	2 cut(s)	178, 391
MaeI	CTAG	2 cut(s)	336, 531
MaeII	ACGT	1 cut(s)	341
MalI	GATC	3 cut(s)	174, 488, 624
MboI	GATC	3 cut(s)	172, 486, 622
MboII	GAAGA	3 cut(s)	103, 154, 217
MfeI	CAATTG	1 cut(s)	626
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	3 cut(s)	57, 346, 626
Mly113I	GGCGCC	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	643
MnlI	CCTC	9 cut(s)	111, 178, 226, 235, 250, 293, 310, 517, 559
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	461
MunI	CAATTG	1 cut(s)	626
Mva1269I	GAATGC	1 cut(s)	454
MwoI	GCNNNNNNNGC	6 cut(s)	443, 452, 461, 557, 566, 578
NarI	GGCGCC	1 cut(s)	560
NciI	CCSGG	1 cut(s)	461
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	3 cut(s)	172, 486, 622
NlaIV	GGNNCC	1 cut(s)	561
NspV	TTCGAA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	2 cut(s)	155, 347
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	586
PflMI	CCANNNNNTGG	1 cut(s)	471
PkrI	GCNGC	4 cut(s)	454, 457, 571, 574
PleI	GAGTC	1 cut(s)	643
PluTI	GGCGCC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	643
Psp124BI	GAGCTC	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	2 cut(s)	312, 478
RsaNI	GTAC	2 cut(s)	311, 477
SacI	GAGCTC	1 cut(s)	324
SatI	GCNGC	4 cut(s)	453, 456, 570, 573
Sau3AI	GATC	3 cut(s)	172, 486, 622
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	7 cut(s)	49, 246, 324, 344, 472, 495, 516
SfaNI	GCATC	2 cut(s)	178, 391
SfcI	CTRYAG	2 cut(s)	435, 494
SfoI	GGCGCC	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	249
Sse9I	AATT	3 cut(s)	57, 346, 626
SsiI	CCGC	4 cut(s)	152, 164, 517, 573
SspDI	GGCGCC	1 cut(s)	559
SspMI	CTAG	2 cut(s)	336, 531
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	32, 100, 656
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	5 cut(s)	249, 324, 344, 350, 618
TasI	AATT	3 cut(s)	57, 346, 626
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	1 cut(s)	586
TseI	GCWGC	3 cut(s)	452, 455, 569
TspDTI	ATGAA	4 cut(s)	69, 218, 558, 624
Van91I	CCANNNNNTGG	1 cut(s)	471
XapI	RAATTY	1 cut(s)	346
XspI	CTAG	2 cut(s)	336, 531
ZraI	GACGTC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.