Rroxscaffold_3G00263650

CD2 antigen cytoplasmic tail-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003252
Physical Location & Seq
Reverse (-)
57538148 .. 57539313
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263650.1

Sequence Viewer

Length: 1101 bp
ATGTCACGCTCCAATCTGAAACGCTCCTTCGAAGACGACGACATGGCCGGAAAGCCTCCGCCGGCGAAGAAGGTTAGGTTTCCGAAGGGGAAGAAGGTGAAGCCGGAAGACGAACAAGCCAGAGTCGGTGGCGGTGGCGGTGGCGATGCGATCGGTCCGACGCCGCAGACGGACCCTAGCCTCGCCGCGAAAGAGCGCGCGAAGCGCCGCAGCAGCCAAATCTCCGAGCTCTGCAAGGACGACGACGCCTCCGCCGCTGAGGTCAGTTACCGGGGACTGGACTACGACAACTTCGTCGAGGACGGCGTTCAGTTTGAGCCGTTTAACTTGGAGAAGGAGAGAGAAGAAGGCTATTTTGATGCGGATGGGAATTTTGTGGAGTATGTGGAGAAGAATAAAGTGAAGGATGCTTGGCTTGATAGCATCACCAAAGCTGTTGATCCAGAAACGACGAAGAAATTCGCTGAGAAAAACGGTGGTGGTGGTGAAGGTGAAGGTGATGATGAAGTAGGTCAGGATTTGAGTTCCGATGAGATTGGGAAGATTAAGAGGCGGATTGCGGATGTGCTGGAGCCTGAGGAGACTGTTTTGCAAGCTCTGAGGAGGCTGAAGGGGAACAAGAAGGAGAAGATGTCAGCGGAGACGAAGGCGGTGTTTGATCAGTTGACTGAGGATGCTATGGTGTTGATGATGAAGAATGGGGAGAACAATGTGTATGATGAGGAGAAGGAGGTTTTCGAGAGGGAGGCGCAGGGGTATGAGAGTTTGGCTAAGGCGAGAATGGGGGAAGGGAAGTCGATATTGGAGGAGCTCGAAACTGATGCTGGGACGTCGAATTCGATTGCGTCCATGCCTGCAGTTGTGGCGAATGCTGCTGCGCCGGGTTTGGAGAATAATGGTGGAGGATTGGGGAATGATTATGTGTTTGATGATGCTTCTGGGTACTATTATAGCCACAGCTTGGGGTACTATTATGATCCAACTACAGGGTTGTATTGCTCAGCTGCTTCGGGGTTGTGGTACTCGTACAATGAGGAGACTGGGGCATATGATGAAGTCGCACACCAGGCACCTGAGGCTGCCGCCGCTGCTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

366

Amino Acids

39.86

Weight (kDa)

4.55

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OCRE PF17780 305 - 353 3.9e-17 OCRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 1 cut(s) 833
AccB1I GGYRCC 1 cut(s) 1069
AccB7I CCANNNNNTGG 1 cut(s) 961
AccII CGCG 3 cut(s) 188, 198, 200
AclWI GGATC 2 cut(s) 434, 971
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 3 cut(s) 370, 458, 835
AcuI CTGAAG 1 cut(s) 629
AcyI GRCGYC 3 cut(s) 161, 246, 830
AfaI GTAC 4 cut(s) 944, 968, 1022, 1028
AfiI CCNNNNNNNGG 3 cut(s) 277, 961, 986
AjnI CCWGG 1 cut(s) 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AluBI AGCT 6 cut(s) 229, 434, 596, 811, 960, 1004
AluI AGCT 6 cut(s) 229, 434, 596, 811, 960, 1004
Alw21I GWGCWC 2 cut(s) 231, 813
Alw26I GTCTC 3 cut(s) 575, 635, 1031
AlwI GGATC 2 cut(s) 434, 971
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 7 cut(s) 210, 213, 872, 875, 1004, 1079, 1088
ApoI RAATTY 3 cut(s) 370, 458, 835
ArsI GACNNNNNNTTYG 2 cut(s) 820, 852
Asp700I GAANNNNTTC 1 cut(s) 458
AspLEI GCGC 5 cut(s) 198, 200, 207, 751, 880
AspS9I GGNCC 2 cut(s) 155, 172
AsuC2I CCSGG 2 cut(s) 272, 882
AsuHPI GGTGA 5 cut(s) 109, 418, 497, 503, 509
AsuII TTCGAA 1 cut(s) 30
AvaII GGWCC 2 cut(s) 155, 172
AxyI CCTNAGG 2 cut(s) 576, 1074
BanI GGYRCC 1 cut(s) 1069
BanII GRGCYC 2 cut(s) 231, 813
BbsI GAAGAC 2 cut(s) 39, 114
Bbv12I GWGCWC 2 cut(s) 231, 813
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 7 cut(s) 222, 225, 859, 862, 991, 1066, 1075
BccI CCATC 1 cut(s) 359
BceAI ACGGC 2 cut(s) 304, 319
BcgI CGANNNNNNTGC 2 cut(s) 803, 837
BciT130I CCWGG 1 cut(s) 1067
BclI TGATCA 1 cut(s) 658
BcnI CCSGG 2 cut(s) 272, 882
BcoDI GTCTC 3 cut(s) 575, 635, 1031
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 2 cut(s) 855, 984
BfoI RGCGCY 1 cut(s) 208
BlpI GCTNAGC 1 cut(s) 1000
Bme1390I CCNGG 3 cut(s) 272, 882, 1067
Bme18I GGWCC 2 cut(s) 155, 172
BmgT120I GGNCC 2 cut(s) 155, 172
BmiI GGNNCC 3 cut(s) 174, 573, 1071
BmrFI CCNGG 3 cut(s) 272, 882, 1067
BmrI ACTGGG 1 cut(s) 1050
BmsI GCATC 7 cut(s) 136, 349, 397, 432, 664, 811, 922
BmuI ACTGGG 1 cut(s) 1050
BpiI GAAGAC 2 cut(s) 39, 114
BpmI CTGGAG 1 cut(s) 590
Bpu10I CCTNAGC 2 cut(s) 258, 771
Bpu1102I GCTNAGC 1 cut(s) 1000
Bpu14I TTCGAA 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 272, 882
BsaHI GRCGYC 3 cut(s) 161, 246, 830
BsaJI CCNNGG 1 cut(s) 271
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 617, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 961, 986
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 282, 1045
Bse21I CCTNAGG 2 cut(s) 576, 1074
BseBI CCWGG 1 cut(s) 1067
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 4 cut(s) 370, 412, 568, 679
BseLI CCNNNNNNNGG 3 cut(s) 277, 961, 986
BseMII CTCAG 7 cut(s) 249, 456, 567, 590, 660, 1014, 1065
BseNI ACTGG 2 cut(s) 282, 1045
BsePI GCGCGC 1 cut(s) 196
BseRI GAGGAG 5 cut(s) 593, 616, 737, 821, 1049
BseXI GCAGC 7 cut(s) 222, 225, 859, 862, 991, 1066, 1075
BseYI CCCAGC 1 cut(s) 824
Bsh1236I CGCG 3 cut(s) 188, 198, 200
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 1069
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 231, 813
BsiSI CCGG 5 cut(s) 48, 62, 104, 271, 881
BslFI GGGAC 2 cut(s) 288, 841
BslI CCNNNNNNNGG 3 cut(s) 277, 961, 986
BsmAI GTCTC 3 cut(s) 575, 635, 1031
BsmBI CGTCTC 1 cut(s) 635
BsmFI GGGAC 2 cut(s) 288, 841
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 231, 813
Bsp143I GATC 4 cut(s) 150, 439, 658, 976
Bsp1720I GCTNAGC 1 cut(s) 1000
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 7 cut(s) 250, 457, 568, 591, 661, 1013, 1066
BspFNI CGCG 3 cut(s) 188, 198, 200
BspLI GGNNCC 3 cut(s) 174, 573, 1071
BspMAI CTGCAG 1 cut(s) 859
BspPI GGATC 2 cut(s) 434, 971
BspT104I TTCGAA 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 1069
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 282, 1045
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 271
BssHII GCGCGC 1 cut(s) 196
BssMI GATC 4 cut(s) 150, 439, 658, 976
BssNI GRCGYC 3 cut(s) 161, 246, 830
Bst2UI CCWGG 1 cut(s) 1067
Bst4CI ACNGT 2 cut(s) 476, 586
BstACI GRCGYC 3 cut(s) 161, 246, 830
BstBI TTCGAA 1 cut(s) 30
BstC8I GCNNGC 4 cut(s) 63, 198, 594, 855
BstDEI CTNAG 8 cut(s) 258, 465, 576, 599, 669, 771, 1000, 1074
BstF5I GGATG 4 cut(s) 370, 412, 568, 679
BstFNI CGCG 3 cut(s) 188, 198, 200
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 5 cut(s) 198, 200, 207, 751, 880
BstKTI GATC 4 cut(s) 153, 442, 661, 979
BstMAI GTCTC 3 cut(s) 575, 635, 1031
BstMBI GATC 4 cut(s) 150, 439, 658, 976
BstMCI CGRYCG 1 cut(s) 153
BstNI CCWGG 1 cut(s) 1067
BstSCI CCNGG 3 cut(s) 270, 880, 1065
BstSFI CTRYAG 2 cut(s) 855, 984
BstUI CGCG 3 cut(s) 188, 198, 200
BstV1I GCAGC 7 cut(s) 222, 225, 859, 862, 991, 1066, 1075
BstV2I GAAGAC 2 cut(s) 39, 114
Bsu36I CCTNAGG 2 cut(s) 576, 1074
BsuRI GGCC 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 4 cut(s) 370, 412, 568, 679
Cac8I GCNNGC 4 cut(s) 63, 198, 594, 855
CfoI GCGC 5 cut(s) 198, 200, 207, 751, 880
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 155, 172
CpoI CGGWCCG 1 cut(s) 155
CseI GACGC 3 cut(s) 169, 254, 834
Csp6I GTAC 4 cut(s) 943, 967, 1021, 1027
CspI CGGWCCG 1 cut(s) 155
CviAII CATG 2 cut(s) 43, 850
CviQI GTAC 4 cut(s) 943, 967, 1021, 1027
DdeI CTNAG 8 cut(s) 258, 465, 576, 599, 669, 771, 1000, 1074
DpnI GATC 4 cut(s) 152, 441, 660, 978
DpnII GATC 4 cut(s) 150, 439, 658, 976
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 45
EciI GGCGGA 3 cut(s) 48, 241, 568
Ecl136II GAGCTC 2 cut(s) 229, 811
Eco24I GRGCYC 2 cut(s) 231, 813
Eco47I GGWCC 2 cut(s) 155, 172
Eco53kI GAGCTC 2 cut(s) 229, 811
Eco57I CTGAAG 1 cut(s) 629
Eco81I CCTNAGG 2 cut(s) 576, 1074
EcoICRI GAGCTC 2 cut(s) 229, 811
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 1 cut(s) 1065
EcoT38I GRGCYC 2 cut(s) 231, 813
Esp3I CGTCTC 1 cut(s) 635
FaeI CATG 2 cut(s) 46, 853
FaqI GGGAC 2 cut(s) 288, 841
FatI CATG 2 cut(s) 42, 849
FauNDI CATATG 1 cut(s) 1048
FbaI TGATCA 1 cut(s) 658
FokI GGATG 4 cut(s) 377, 419, 575, 686
FriOI GRGCYC 2 cut(s) 231, 813
FspBI CTAG 1 cut(s) 177
GlaI GCGC 5 cut(s) 197, 199, 206, 750, 879
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 1 cut(s) 590
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 48, 62, 104, 271, 881
HgaI GACGC 3 cut(s) 169, 254, 834
HhaI GCGC 5 cut(s) 198, 200, 207, 751, 880
Hin1I GRCGYC 3 cut(s) 161, 246, 830
Hin1II CATG 2 cut(s) 46, 853
Hin6I GCGC 5 cut(s) 196, 198, 205, 749, 878
HinP1I GCGC 5 cut(s) 196, 198, 205, 749, 878
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HinfI GANTC 1 cut(s) 123
HpaII CCGG 5 cut(s) 48, 62, 104, 271, 881
HphI GGTGA 5 cut(s) 109, 418, 497, 503, 509
Hpy166II GTNNAC 1 cut(s) 666
Hpy188I TCNGA 6 cut(s) 18, 84, 159, 226, 529, 600
Hpy188III TCNNGA 3 cut(s) 443, 515, 739
Hpy8I GTNNAC 1 cut(s) 666
Hpy99I CGWCG 7 cut(s) 41, 163, 245, 248, 299, 454, 835
HpyCH4III ACNGT 2 cut(s) 476, 586
HpyCH4IV ACGT 1 cut(s) 830
HpyCH4V TGCA 3 cut(s) 234, 592, 857
HpyF3I CTNAG 8 cut(s) 258, 465, 576, 599, 669, 771, 1000, 1074
HpySE526I ACGT 1 cut(s) 830
Hsp92I GRCGYC 3 cut(s) 161, 246, 830
Hsp92II CATG 2 cut(s) 46, 853
HspAI GCGC 5 cut(s) 196, 198, 205, 749, 878
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 4 cut(s) 150, 439, 658, 976
LmnI GCTCC 4 cut(s) 14, 29, 571, 808
Lsp1109I GCAGC 7 cut(s) 222, 225, 859, 862, 991, 1066, 1075
LweI GCATC 7 cut(s) 136, 349, 397, 432, 664, 811, 922
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 830
MaeIII GTNAC 2 cut(s) 3, 266
MalI GATC 4 cut(s) 152, 441, 660, 978
MboI GATC 4 cut(s) 150, 439, 658, 976
MhlI GDGCHC 2 cut(s) 231, 813
MluCI AATT 4 cut(s) 370, 458, 835, 1096
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 2 cut(s) 182, 1004
MreI CGCCGGCG 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 458
MseI TTAA 2 cut(s) 324, 546
MspA1I CMGCKG 4 cut(s) 257, 638, 1004, 1088
MspI CCGG 5 cut(s) 48, 62, 104, 271, 881
MspR9I CCNGG 3 cut(s) 272, 882, 1067
Mva1269I GAATGC 1 cut(s) 874
MvaI CCWGG 1 cut(s) 1067
MvnI CGCG 3 cut(s) 188, 198, 200
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 2 cut(s) 272, 882
NdeI CATATG 1 cut(s) 1048
NdeII GATC 4 cut(s) 150, 439, 658, 976
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 2 cut(s) 46, 853
NlaIV GGNNCC 3 cut(s) 174, 573, 1071
NmuCI GTSAC 1 cut(s) 3
NspV TTCGAA 1 cut(s) 30
PauI GCGCGC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 4 cut(s) 36, 291, 303, 836
PctI GAATGC 1 cut(s) 874
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 458
PflMI CCANNNNNTGG 1 cut(s) 961
Ple19I CGATCG 1 cut(s) 153
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp124BI GAGCTC 2 cut(s) 231, 813
Psp6I CCWGG 1 cut(s) 1065
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 1 cut(s) 1065
PspN4I GGNNCC 3 cut(s) 174, 573, 1071
PspPI GGNCC 2 cut(s) 155, 172
PstI CTGCAG 1 cut(s) 859
PteI GCGCGC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 4 cut(s) 944, 968, 1022, 1028
RsaNI GTAC 4 cut(s) 943, 967, 1021, 1027
Rsr2I CGGWCCG 1 cut(s) 155
RsrII CGGWCCG 1 cut(s) 155
SacI GAGCTC 2 cut(s) 231, 813
SaqAI TTAA 2 cut(s) 324, 546
Sau3AI GATC 4 cut(s) 150, 439, 658, 976
Sau96I GGNCC 2 cut(s) 155, 172
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 272, 882, 1067
SduI GDGCHC 2 cut(s) 231, 813
SfaNI GCATC 7 cut(s) 136, 349, 397, 432, 664, 811, 922
SfcI CTRYAG 2 cut(s) 855, 984
SfuI TTCGAA 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 61
SinI GGWCC 2 cut(s) 155, 172
Sse9I AATT 4 cut(s) 370, 458, 835, 1096
SspMI CTAG 1 cut(s) 177
SstI GAGCTC 2 cut(s) 231, 813
StyD4I CCNGG 3 cut(s) 270, 880, 1065
TaaI ACNGT 2 cut(s) 476, 586
TaiI ACGT 1 cut(s) 833
TaqI TCGA 7 cut(s) 30, 297, 738, 797, 813, 833, 839
TaqII GACCGA 1 cut(s) 143
TasI AATT 4 cut(s) 370, 458, 835, 1096
TauI GCSGC 6 cut(s) 166, 188, 210, 257, 1085, 1088
Tru1I TTAA 2 cut(s) 324, 546
Tru9I TTAA 2 cut(s) 324, 546
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 7 cut(s) 210, 213, 872, 875, 1004, 1079, 1088
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 519, 707, 1068
TspGWI ACGGA 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 961
VpaK11BI GGWCC 2 cut(s) 155, 172
XapI RAATTY 3 cut(s) 370, 458, 835
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 1 cut(s) 177
ZraI GACGTC 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.