AT5G13970

Tumour suppressing sub-chromosomal transferable candidate 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006057
Physical Location & Seq
Reverse (-)
4506191 .. 4507864
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13970.1

Sequence Viewer

Length: 1215 bp
ATGGATGAGAGTTTCAGAGTGAGGATAGACAAGGTTTTTGGATCTCTTGCATCATCTTCTACGTCTTCAGCACCTGTGAGCTCTCTCTGGTGTCTCGCGGAAGACGAGATCGATGGAAACCAACGGAGCGGAGAAAAGGAACTTTCTGAATCATTGAACAGCTTCTCGGATAATGGAAAGCAGGAGCATGAATCAGATGATTTGAGCATAGATGAGGAAAAAGGAAGGTCTAGTGAATTGCAGAAGCCGAGTGATTACGATGACGAAGAGTGGGAGATCAAAAACTCAATTGGGATGGACTCTACTCTTGATATGGAGGAAGAGCTAGATGATAATGACAAAGTGGCATTAGGTGAAAAAGTGTACTGTTGCATGAAGGATGTGAATGACGACTATGAGACTGAAGCAGACGAGTGGGTGGAGCTTCCAGCTTCTTTCAATGAAAGAGAGAAGGACCCTCGAGCTAATCTCATAGCAGCAAAGCTTAGGCTTAAAGAGGACGCAGAAGCTGTTAACAAGTTGAATTCTTTACATGTCTCTGAGGAACTTCAGGATAATCTGTCCATGTCGACGGAAAACGAGAAACCTTTTGTGGTGTCTGAAGATAACTTGCTGGGGGCTTTCAAGGAGTCACATGTTGGCTCTTCAGATGAGAATGGGCTGAAACCGATATTGAAGAGGAGAGAAAACCAGGCTGATGATTCTAAGTCGCCAAAGCGTGTTAGGTTTAGTTCTGATGTCAAAGATAGGACCTTGACTGAAGGTGACAACGATTCTGTGATGGAGGCAAGTTCCCCTAACGAAGATAAAGTAGAGGCAGTCTATCCGACTGGGATTCCAGATTATATGCGGAACCCATCAAAATACACTCGATATACATTCGAGTCAGGTGAGGTTGATGAAGAATCCAACAGGAAAGCATACATGGACTTTCTCAACATGATTAGGAGCAAAGACGAGTCCCTTGTAGACCCTCTGATGGAGCTTCCAAGATCAGTGGCTTTCGTACCAAAGAGAAAACCAATGGCTGAGAGTAAAGTAGAAAATATAGACAAGGATTGTGAGGGAAGAAGAGTTGCAATAGCTGTTGATACTATAGAAGACTGCACCATTTCTGCTATGGAAGAAGATGAACCAGAAACAGCTCAACATGTCACAAAAAGACCTGGCCGACAGTATCGTGCCAGAGCCAAGGAAGATCCAGAGGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

404

Amino Acids

45.74

Weight (kDa)

4.45

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 263 - 316 2.1e-07 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 129
AccI GTMKAC 2 cut(s) 569, 969
AccII CGCG 1 cut(s) 98
AciI CCGC 3 cut(s) 98, 129, 850
AclWI GGATC 2 cut(s) 49, 1193
AcoI YGGCCR 1 cut(s) 1168
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 6 cut(s) 51, 423, 533, 621, 630, 780
AfaI GTAC 2 cut(s) 365, 1008
AfiI CCNNNNNNNGG 1 cut(s) 979
AflIII ACRYGT 3 cut(s) 532, 634, 1150
AgsI TTSAA 5 cut(s) 157, 439, 523, 625, 676
AjnI CCWGG 2 cut(s) 690, 1165
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 3 cut(s) 98, 392, 541
AlwI GGATC 2 cut(s) 49, 1193
AlwNI CAGNNNCTG 2 cut(s) 74, 509
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 1 cut(s) 1168
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 1 cut(s) 523
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 454, 750
AsuHPI GGTGA 3 cut(s) 365, 776, 902
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 2 cut(s) 454, 750
BanII GRGCYC 1 cut(s) 83
BbsI GAAGAC 3 cut(s) 57, 108, 1107
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 488
BccI CCATC 5 cut(s) 107, 289, 775, 865, 973
BciT130I CCWGG 2 cut(s) 692, 1167
BcoDI GTCTC 3 cut(s) 98, 392, 541
BfaI CTAG 2 cut(s) 231, 326
BfmI CTRYAG 1 cut(s) 1095
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
Bme1390I CCNGG 2 cut(s) 692, 1167
Bme18I GGWCC 2 cut(s) 454, 750
BmeT110I CYCGRG 1 cut(s) 459
BmgT120I GGNCC 2 cut(s) 454, 750
BmiI GGNNCC 2 cut(s) 456, 854
BmrFI CCNGG 2 cut(s) 692, 1167
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 1 cut(s) 59
BmuI ACTGGG 1 cut(s) 840
BpiI GAAGAC 3 cut(s) 57, 108, 1107
BplI GAGNNNNNCTC 2 cut(s) 453, 485
Bpu10I CCTNAGC 1 cut(s) 485
Bsa29I ATCGAT 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 1191
Bsc4I CCNNNNNNNGG 1 cut(s) 979
Bse1I ACTGG 1 cut(s) 835
BseBI CCWGG 2 cut(s) 692, 1167
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 1191
BseGI GGATG 3 cut(s) 10, 300, 385
BseLI CCNNNNNNNGG 1 cut(s) 979
BseMII CTCAG 2 cut(s) 531, 1020
BseNI ACTGG 1 cut(s) 835
BseRI GAGGAG 1 cut(s) 694
BseXI GCAGC 1 cut(s) 488
BseYI CCCAGC 1 cut(s) 613
BsgI GTGCAG 1 cut(s) 1090
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 1170
BshVI ATCGAT 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 459
BslFI GGGAC 1 cut(s) 946
BslI CCNNNNNNNGG 1 cut(s) 979
BsmAI GTCTC 3 cut(s) 98, 392, 541
BsmFI GGGAC 1 cut(s) 946
BsnI GGCC 1 cut(s) 1170
BsoBI CYCGRG 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 5 cut(s) 41, 108, 276, 992, 1198
BspACI CCGC 3 cut(s) 98, 129, 850
BspANI GGCC 1 cut(s) 1170
BspCNI CTCAG 2 cut(s) 532, 1021
BspDI ATCGAT 1 cut(s) 111
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 456, 854
BspPI GGATC 2 cut(s) 49, 1193
BspQI GCTCTTC 2 cut(s) 315, 649
BsrBI CCGCTC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 835
BssECI CCNNGG 1 cut(s) 1191
BssMI GATC 5 cut(s) 41, 108, 276, 992, 1198
BssT1I CCWWGG 1 cut(s) 1191
Bst2UI CCWGG 2 cut(s) 692, 1167
Bst4CI ACNGT 2 cut(s) 368, 1176
Bst6I CTCTTC 5 cut(s) 261, 315, 649, 671, 1066
BstDEI CTNAG 4 cut(s) 485, 540, 705, 1029
BstF5I GGATG 3 cut(s) 10, 300, 385
BstFNI CGCG 1 cut(s) 98
BstKTI GATC 5 cut(s) 44, 111, 279, 995, 1201
BstMAI GTCTC 3 cut(s) 98, 392, 541
BstMBI GATC 5 cut(s) 41, 108, 276, 992, 1198
BstNI CCWGG 2 cut(s) 692, 1167
BstNSI RCATGY 3 cut(s) 536, 638, 1154
BstSCI CCNGG 2 cut(s) 690, 1165
BstSFI CTRYAG 1 cut(s) 1095
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 488
BstV2I GAAGAC 3 cut(s) 57, 108, 1107
BstX2I RGATCY 2 cut(s) 41, 1198
BstYI RGATCY 2 cut(s) 41, 1198
Bsu15I ATCGAT 1 cut(s) 111
BsuRI GGCC 1 cut(s) 1170
BsuTUI ATCGAT 1 cut(s) 111
BtsCI GGATG 3 cut(s) 10, 300, 385
BtsIMutI CAGTG 1 cut(s) 1002
CaiI CAGNNNCTG 2 cut(s) 74, 509
Cfr13I GGNCC 2 cut(s) 454, 750
ClaI ATCGAT 1 cut(s) 111
CseI GACGC 1 cut(s) 509
Csp6I GTAC 2 cut(s) 364, 1007
CspCI CAANNNNNGTGG 2 cut(s) 978, 1013
CviAII CATG 8 cut(s) 188, 373, 533, 565, 635, 925, 940, 1151
CviQI GTAC 2 cut(s) 364, 1007
DdeI CTNAG 4 cut(s) 485, 540, 705, 1029
DpnI GATC 5 cut(s) 43, 110, 278, 994, 1200
DpnII GATC 5 cut(s) 41, 108, 276, 992, 1198
EaeI YGGCCR 1 cut(s) 1168
Eam1104I CTCTTC 5 cut(s) 261, 315, 649, 671, 1066
EarI CTCTTC 5 cut(s) 261, 315, 649, 671, 1066
Ecl136II GAGCTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 1191
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 454, 750
Eco53kI GAGCTC 1 cut(s) 81
Eco57I CTGAAG 6 cut(s) 51, 423, 533, 621, 630, 780
Eco88I CYCGRG 1 cut(s) 459
EcoICRI GAGCTC 1 cut(s) 81
EcoO109I RGGNCCY 2 cut(s) 454, 750
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 690, 1165
EcoT14I CCWWGG 1 cut(s) 1191
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 1191
FaeI CATG 8 cut(s) 191, 376, 536, 568, 638, 928, 943, 1154
FaqI GGGAC 1 cut(s) 946
FatI CATG 8 cut(s) 187, 372, 532, 564, 634, 924, 939, 1150
FblI GTMKAC 2 cut(s) 569, 969
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 3 cut(s) 17, 307, 392
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 2 cut(s) 231, 326
GluI GCNGC 1 cut(s) 477
GsaI CCCAGC 1 cut(s) 617
HaeIII GGCC 1 cut(s) 1170
HgaI GACGC 1 cut(s) 509
Hin1II CATG 8 cut(s) 191, 376, 536, 568, 638, 928, 943, 1154
HincII GTYRAC 2 cut(s) 514, 570
HindII GTYRAC 2 cut(s) 514, 570
HindIII AAGCTT 1 cut(s) 482
HpaI GTTAAC 1 cut(s) 514
HphI GGTGA 3 cut(s) 365, 776, 902
Hpy166II GTNNAC 4 cut(s) 364, 514, 570, 970
Hpy188III TCNNGA 4 cut(s) 308, 551, 839, 1202
Hpy8I GTNNAC 4 cut(s) 364, 514, 570, 970
Hpy99I CGWCG 1 cut(s) 574
HpyAV CCTTC 4 cut(s) 219, 370, 445, 755
HpyCH4III ACNGT 2 cut(s) 368, 1176
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 5 cut(s) 50, 241, 372, 1079, 1107
HpyF3I CTNAG 4 cut(s) 485, 540, 705, 1029
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 8 cut(s) 191, 376, 536, 568, 638, 928, 943, 1154
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 5 cut(s) 41, 108, 276, 992, 1198
LguI GCTCTTC 2 cut(s) 315, 649
LmnI GCTCC 5 cut(s) 126, 184, 421, 948, 982
Lsp1109I GCAGC 1 cut(s) 488
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 231, 326
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 3 cut(s) 630, 764, 1153
MalI GATC 5 cut(s) 43, 110, 278, 994, 1200
MbiI CCGCTC 1 cut(s) 129
MboI GATC 5 cut(s) 41, 108, 276, 992, 1198
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 2 cut(s) 41, 1198
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 3 cut(s) 236, 288, 523
MlyI GAGTC 4 cut(s) 293, 638, 893, 968
MmeI TCCRAC 2 cut(s) 851, 933
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 2 cut(s) 492, 513
MspR9I CCNGG 2 cut(s) 692, 1167
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 2 cut(s) 692, 1167
MvnI CGCG 1 cut(s) 98
NdeII GATC 5 cut(s) 41, 108, 276, 992, 1198
NlaIII CATG 8 cut(s) 191, 376, 536, 568, 638, 928, 943, 1154
NlaIV GGNNCC 2 cut(s) 456, 854
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 3 cut(s) 630, 764, 1153
NspI RCATGY 3 cut(s) 536, 638, 1154
PaeR7I CTCGAG 1 cut(s) 459
PciI ACATGT 3 cut(s) 532, 634, 1150
PciSI GCTCTTC 2 cut(s) 315, 649
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 6 cut(s) 149, 191, 701, 773, 835, 905
PkrI GCNGC 1 cut(s) 478
PleI GAGTC 4 cut(s) 293, 637, 892, 967
PpsI GAGTC 4 cut(s) 293, 637, 892, 967
PpuMI RGGWCCY 2 cut(s) 454, 750
PscI ACATGT 3 cut(s) 532, 634, 1150
Psp124BI GAGCTC 1 cut(s) 83
Psp5II RGGWCCY 2 cut(s) 454, 750
Psp6I CCWGG 2 cut(s) 690, 1165
PspFI CCCAGC 1 cut(s) 613
PspGI CCWGG 2 cut(s) 690, 1165
PspN4I GGNNCC 2 cut(s) 456, 854
PspPI GGNCC 2 cut(s) 454, 750
PspPPI RGGWCCY 2 cut(s) 454, 750
PspXI VCTCGAGB 1 cut(s) 459
PstNI CAGNNNCTG 2 cut(s) 74, 509
PsuI RGATCY 2 cut(s) 41, 1198
RsaI GTAC 2 cut(s) 365, 1008
RsaNI GTAC 2 cut(s) 364, 1007
SacI GAGCTC 1 cut(s) 83
SalI GTCGAC 1 cut(s) 568
SapI GCTCTTC 2 cut(s) 315, 649
SaqAI TTAA 2 cut(s) 492, 513
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 5 cut(s) 41, 108, 276, 992, 1198
Sau96I GGNCC 2 cut(s) 454, 750
SchI GAGTC 4 cut(s) 293, 638, 893, 968
ScrFI CCNGG 2 cut(s) 692, 1167
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 1095
Sfr274I CTCGAG 1 cut(s) 459
SinI GGWCC 2 cut(s) 454, 750
SlaI CTCGAG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
Sse9I AATT 3 cut(s) 236, 288, 523
SsiI CCGC 3 cut(s) 98, 129, 850
SspMI CTAG 2 cut(s) 231, 326
SstI GAGCTC 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 690, 1165
StyI CCWWGG 1 cut(s) 1191
TaaI ACNGT 2 cut(s) 368, 1176
TaiI ACGT 1 cut(s) 65
TaqI TCGA 5 cut(s) 111, 460, 569, 871, 882
TasI AATT 3 cut(s) 236, 288, 523
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 6 cut(s) 149, 191, 701, 773, 835, 905
Tru1I TTAA 2 cut(s) 492, 513
Tru9I TTAA 2 cut(s) 492, 513
TscAI CASTG 1 cut(s) 1002
TseFI GTSAC 3 cut(s) 630, 764, 1153
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 3 cut(s) 630, 764, 1153
TspDTI ATGAA 5 cut(s) 204, 389, 456, 915, 1146
TspGWI ACGGA 2 cut(s) 139, 587
TspRI CASTG 1 cut(s) 1002
VpaK11BI GGWCC 2 cut(s) 454, 750
XapI RAATTY 1 cut(s) 523
XceI RCATGY 3 cut(s) 536, 638, 1154
XcmI CCANNNNNNNNNTGG 1 cut(s) 1117
XhoI CTCGAG 1 cut(s) 459
XmiI GTMKAC 2 cut(s) 569, 969
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 2 cut(s) 231, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.