Rh2CG647500

Tumour suppressing sub-chromosomal transferable candidate 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006057
Physical Location & Seq
Forward (+)
81675430 .. 81677275
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG647500.1

Sequence Viewer

Length: 1275 bp
ATGGAAGAGAGTTTCAGCGTTCGAGTAAGCAAAACGTTCGATATTCTAGATGGCTCATCACCATCAGCGACAGCGACTGCTCCGTCTTCGTCGCTGTGGTCCCTAACAGGTGAGGAAATCGAGAAGAGAGAATGGAACAGGGACAAGGGGAGCCCCGAACCCCAACCCCGACCCTGCAACCCAGATTCAAATTCAAAGGACGATTTCTTCGGTAACGAGCTGGAGAAGGACCTTCTGGACCTTGACGACGACGACGACGTGGAAGAAGAAGAAGAAGAAGACGAGGTGGTGGAGGAGCAATCTGCTAAGCCTAAGCCGAAGCCGAAGCCTATGCCGGATGATTATAACGAGGAGCAGTGGCAAATTAAAACCTGCATTGGCTTGGACTGTACTCTCGACCACGAGGAAGAGGAAGATGAATTTGACAAAGTGGCTGTTGGCAAGGGAAATGCTGCAGACCGCTTTTATATGAAGGATGTAAATGACTATCCGATAGACATTGATTCTCAATACGAGGTTCCCAATTCATTGAACGATTTCACTAGAGACCCTCGCGCCAATCACCTAGCAGCTAAGATTAGACTCCAACTGGATGCAGAAGCAGCTCGAAAAATTGACTCCTTGCGCGTCTCTGGGAACACTGCACCATCCGGTGCTATAGCTGATGAATTCGTCCCGTCTGAAGATGCTATCAACCTGAAATCAATTTTGAAGAGGAAAAATGATGAGCAGTTAGGCTCATCTAAATCACAAAAGCGTGTTCGGTTTGACCCTGAGTGTAAAGATGATTGCGATCAAGAGCCTGATGGATCCAAAGATATACCTGTGAAAAGCCTTTCAGGTGAAGATCATGTCTCTGCAGTTCCAGATTACATACGGAATCCATCAAGATATACACATTATACATTTGATTCATCAACTGACATGGATGAGGAAGCTAACAGGCAAGCCTATATGGATTTCCGTAATCTTTTGGGGATGTCAAATACTACGGATGCAGAAGTTTCAAAATCGATCATATTCACACCAAAAAAGAAATCAACTGATGCGACAATGCTAGAAATTGATGGGGAGTCGGAGAGACCAGTAGGTGCTAGTAAGGAATCTGCATCTTACAGAGTCGTGCCAATTGCTATTGCAGCCAGGGATCACGAAGACAGTGATGTGTGTGCAATGGATGAAGATGAACCAGATATAGAAACCAGTGGAAGAACAAGTTCACAGAGGGTTGGCCGCCAGTTTCGTACAAGAACCAGTTTAGAGTTGGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

424

Amino Acids

47.61

Weight (kDa)

4.39

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 279 - 332 1.4e-06 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AasI GACNNNNNNGTC 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 380
AccII CGCG 2 cut(s) 555, 627
AciI CCGC 2 cut(s) 460, 1234
AclI AACGTT 1 cut(s) 35
AclWI GGATC 3 cut(s) 804, 817, 1155
AcoI YGGCCR 1 cut(s) 1231
AcsI RAATTY 3 cut(s) 190, 419, 668
AcuI CTGAAG 1 cut(s) 702
AfaI GTAC 2 cut(s) 391, 1246
AgsI TTSAA 5 cut(s) 189, 195, 532, 712, 1008
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 1142
AluBI AGCT 5 cut(s) 220, 572, 605, 662, 938
AluI AGCT 5 cut(s) 220, 572, 605, 662, 938
Alw26I GTCTC 4 cut(s) 540, 634, 859, 1075
AlwI GGATC 3 cut(s) 804, 817, 1155
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 1231
ApeKI GCWGC 4 cut(s) 452, 569, 602, 1139
ApoI RAATTY 3 cut(s) 190, 419, 668
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp700I GAANNNNTTC 2 cut(s) 536, 1216
AspLEI GCGC 2 cut(s) 557, 627
AspS9I GGNCC 3 cut(s) 99, 229, 238
AsuHPI GGTGA 4 cut(s) 51, 122, 554, 854
AvaII GGWCC 3 cut(s) 99, 229, 238
BamHI GGATCC 1 cut(s) 809
BanII GRGCYC 1 cut(s) 155
BauI CACGAG 1 cut(s) 401
BbsI GAAGAC 3 cut(s) 78, 285, 1161
BbvI GCAGC 4 cut(s) 439, 581, 614, 1151
BccI CCATC 6 cut(s) 44, 70, 655, 800, 892, 1061
BcgI CGANNNNNNTGC 4 cut(s) 19, 53, 313, 347
BciT130I CCWGG 1 cut(s) 1144
BcoDI GTCTC 4 cut(s) 540, 634, 859, 1075
BfaI CTAG 5 cut(s) 47, 543, 566, 1058, 1095
BfmI CTRYAG 3 cut(s) 453, 657, 858
BfuAI ACCTGC 1 cut(s) 380
BisI GCNGC 5 cut(s) 453, 570, 603, 1140, 1234
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 5 cut(s) 454, 571, 604, 1141, 1235
Bme1390I CCNGG 1 cut(s) 1144
Bme18I GGWCC 3 cut(s) 99, 229, 238
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 3 cut(s) 99, 229, 238
BmiI GGNNCC 4 cut(s) 101, 152, 519, 811
BmrFI CCNGG 1 cut(s) 1144
BmsI GCATC 5 cut(s) 583, 676, 985, 1036, 1118
BpiI GAAGAC 3 cut(s) 78, 285, 1161
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 306
Bsa29I ATCGAT 1 cut(s) 1013
BsaBI GATNNNNATC 1 cut(s) 792
BsaI GGTCTC 2 cut(s) 540, 1075
BsaJI CCNNGG 1 cut(s) 1143
BsaWI WCCGGW 1 cut(s) 650
Bse1I ACTGG 5 cut(s) 594, 1085, 1203, 1237, 1254
Bse3DI GCAATG 1 cut(s) 1179
Bse8I GATNNNNATC 1 cut(s) 792
BseBI CCWGG 1 cut(s) 1144
BseCI ATCGAT 1 cut(s) 1013
BseDI CCNNGG 1 cut(s) 1143
BseGI GGATG 9 cut(s) 343, 481, 598, 647, 934, 984, 1000, 1183, 1273
BseJI GATNNNNATC 1 cut(s) 792
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 5 cut(s) 594, 1085, 1203, 1237, 1254
BseRI GAGGAG 2 cut(s) 308, 365
BseXI GCAGC 4 cut(s) 439, 581, 614, 1151
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 2 cut(s) 555, 627
BshFI GGCC 1 cut(s) 1233
BshVI ATCGAT 1 cut(s) 1013
BsiSI CCGG 2 cut(s) 335, 651
BslFI GGGAC 3 cut(s) 85, 155, 659
BsmAI GTCTC 4 cut(s) 540, 634, 859, 1075
BsmBI CGTCTC 1 cut(s) 634
BsmFI GGGAC 3 cut(s) 85, 155, 659
BsnI GGCC 1 cut(s) 1233
Bso31I GGTCTC 2 cut(s) 540, 1075
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 5 cut(s) 793, 809, 847, 1014, 1147
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 2 cut(s) 460, 1234
BspANI GGCC 1 cut(s) 1233
BspCNI CTCAG 1 cut(s) 766
BspDI ATCGAT 1 cut(s) 1013
BspFNI CGCG 2 cut(s) 555, 627
BspLI GGNNCC 4 cut(s) 101, 152, 519, 811
BspMAI CTGCAG 2 cut(s) 457, 862
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 3 cut(s) 804, 817, 1155
BspTNI GGTCTC 2 cut(s) 540, 1075
BsrDI GCAATG 1 cut(s) 1179
BsrI ACTGG 5 cut(s) 594, 1085, 1203, 1237, 1254
BssECI CCNNGG 1 cut(s) 1143
BssMI GATC 5 cut(s) 793, 809, 847, 1014, 1147
BssSI CACGAG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 1144
Bst4CI ACNGT 2 cut(s) 389, 1160
Bst6I CTCTTC 3 cut(s) 119, 402, 707
BstC8I GCNNGC 1 cut(s) 948
BstDEI CTNAG 4 cut(s) 306, 312, 573, 774
BstF5I GGATG 9 cut(s) 343, 481, 598, 647, 934, 984, 1000, 1183, 1273
BstFNI CGCG 2 cut(s) 555, 627
BstHHI GCGC 2 cut(s) 557, 627
BstKTI GATC 5 cut(s) 796, 812, 850, 1017, 1150
BstMAI GTCTC 4 cut(s) 540, 634, 859, 1075
BstMBI GATC 5 cut(s) 793, 809, 847, 1014, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 602, 1139
BstNI CCWGG 1 cut(s) 1144
BstSCI CCNGG 1 cut(s) 1142
BstSFI CTRYAG 3 cut(s) 453, 657, 858
BstUI CGCG 2 cut(s) 555, 627
BstV1I GCAGC 4 cut(s) 439, 581, 614, 1151
BstV2I GAAGAC 3 cut(s) 78, 285, 1161
BstX2I RGATCY 1 cut(s) 809
BstYI RGATCY 1 cut(s) 809
Bsu15I ATCGAT 1 cut(s) 1013
BsuRI GGCC 1 cut(s) 1233
BsuTUI ATCGAT 1 cut(s) 1013
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 9 cut(s) 343, 481, 598, 647, 934, 984, 1000, 1183, 1273
BtsI GCAGTG 2 cut(s) 362, 639
BtsIMutI CAGTG 4 cut(s) 362, 639, 1165, 1210
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 1 cut(s) 948
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 2 cut(s) 557, 627
Cfr13I GGNCC 3 cut(s) 99, 229, 238
ClaI ATCGAT 1 cut(s) 1013
CseI GACGC 1 cut(s) 616
Csp6I GTAC 2 cut(s) 390, 1245
CviAII CATG 2 cut(s) 851, 925
CviQI GTAC 2 cut(s) 390, 1245
DdeI CTNAG 4 cut(s) 306, 312, 573, 774
DpnI GATC 5 cut(s) 795, 811, 849, 1016, 1149
DpnII GATC 5 cut(s) 793, 809, 847, 1014, 1147
DrdI GACNNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 1231
Eam1104I CTCTTC 3 cut(s) 119, 402, 707
EarI CTCTTC 3 cut(s) 119, 402, 707
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 2 cut(s) 540, 1075
Eco47I GGWCC 3 cut(s) 99, 229, 238
Eco57I CTGAAG 1 cut(s) 702
EcoO109I RGGNCCY 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 1142
EcoT38I GRGCYC 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 634
FaeI CATG 2 cut(s) 854, 928
FaqI GGGAC 3 cut(s) 85, 155, 659
FatI CATG 2 cut(s) 850, 924
Fnu4HI GCNGC 5 cut(s) 453, 570, 603, 1140, 1234
FokI GGATG 8 cut(s) 350, 488, 605, 634, 941, 991, 1007, 1190
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 5 cut(s) 453, 570, 603, 1140, 1234
FspBI CTAG 5 cut(s) 47, 543, 566, 1058, 1095
GlaI GCGC 2 cut(s) 556, 626
GluI GCNGC 5 cut(s) 453, 570, 603, 1140, 1234
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 1233
HapII CCGG 2 cut(s) 335, 651
HgaI GACGC 1 cut(s) 616
HhaI GCGC 2 cut(s) 557, 627
Hin1II CATG 2 cut(s) 854, 928
Hin6I GCGC 2 cut(s) 555, 625
HinP1I GCGC 2 cut(s) 555, 625
HinfI GANTC 9 cut(s) 185, 503, 582, 617, 880, 911, 1073, 1103, 1119
HpaII CCGG 2 cut(s) 335, 651
HphI GGTGA 4 cut(s) 51, 122, 554, 854
Hpy166II GTNNAC 1 cut(s) 1220
Hpy188I TCNGA 3 cut(s) 492, 682, 1078
Hpy188III TCNNGA 8 cut(s) 47, 121, 236, 395, 797, 866, 888, 1151
Hpy8I GTNNAC 1 cut(s) 1220
Hpy99I CGWCG 5 cut(s) 94, 251, 254, 257, 260
HpyAV CCTTC 3 cut(s) 220, 242, 466
HpyCH4III ACNGT 2 cut(s) 389, 1160
HpyCH4IV ACGT 2 cut(s) 35, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 602, 1139
HpyF3I CTNAG 4 cut(s) 306, 312, 573, 774
HpySE526I ACGT 2 cut(s) 35, 258
Hsp92II CATG 2 cut(s) 854, 928
HspAI GCGC 2 cut(s) 555, 625
Kzo9I GATC 5 cut(s) 793, 809, 847, 1014, 1147
LmnI GCTCC 4 cut(s) 85, 150, 295, 352
Lsp1109I GCAGC 4 cut(s) 439, 581, 614, 1151
LweI GCATC 5 cut(s) 583, 676, 985, 1036, 1118
MaeI CTAG 5 cut(s) 47, 543, 566, 1058, 1095
MaeII ACGT 2 cut(s) 35, 258
MaeIII GTNAC 1 cut(s) 212
MalI GATC 5 cut(s) 795, 811, 849, 1016, 1149
MboI GATC 5 cut(s) 793, 809, 847, 1014, 1147
MfeI CAATTG 1 cut(s) 1128
MflI RGATCY 1 cut(s) 809
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 9 cut(s) 190, 363, 419, 523, 612, 668, 705, 1062, 1128
MlyI GAGTC 4 cut(s) 576, 611, 1082, 1128
MmeI TCCRAC 3 cut(s) 610, 1056, 1245
MroXI GAANNNNTTC 2 cut(s) 536, 1216
MseI TTAA 1 cut(s) 366
MspI CCGG 2 cut(s) 335, 651
MspR9I CCNGG 1 cut(s) 1144
MunI CAATTG 1 cut(s) 1128
MvaI CCWGG 1 cut(s) 1144
MvnI CGCG 2 cut(s) 555, 627
MwoI GCNNNNNNNGC 2 cut(s) 602, 1139
NdeII GATC 5 cut(s) 793, 809, 847, 1014, 1147
NlaIII CATG 2 cut(s) 854, 928
NlaIV GGNNCC 4 cut(s) 101, 152, 519, 811
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 255
PdmI GAANNNNTTC 2 cut(s) 536, 1216
PfeI GAWTC 5 cut(s) 185, 503, 880, 911, 1103
PkrI GCNGC 5 cut(s) 454, 571, 604, 1141, 1235
PleI GAGTC 4 cut(s) 576, 611, 1081, 1127
PpsI GAGTC 4 cut(s) 576, 611, 1081, 1127
PpuMI RGGWCCY 1 cut(s) 229
PsiI TTATAA 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 1142
PspGI CCWGG 1 cut(s) 1142
PspN4I GGNNCC 4 cut(s) 101, 152, 519, 811
PspPI GGNCC 3 cut(s) 99, 229, 238
PspPPI RGGWCCY 1 cut(s) 229
PstI CTGCAG 2 cut(s) 457, 862
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 809
RsaI GTAC 2 cut(s) 391, 1246
RsaNI GTAC 2 cut(s) 390, 1245
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 5 cut(s) 453, 570, 603, 1140, 1234
Sau3AI GATC 5 cut(s) 793, 809, 847, 1014, 1147
Sau96I GGNCC 3 cut(s) 99, 229, 238
SchI GAGTC 4 cut(s) 576, 611, 1082, 1128
ScrFI CCNGG 1 cut(s) 1144
SduI GDGCHC 1 cut(s) 155
SfaNI GCATC 5 cut(s) 583, 676, 985, 1036, 1118
SfcI CTRYAG 3 cut(s) 453, 657, 858
SinI GGWCC 3 cut(s) 99, 229, 238
Sse9I AATT 9 cut(s) 190, 363, 419, 523, 612, 668, 705, 1062, 1128
SsiI CCGC 2 cut(s) 460, 1234
SspMI CTAG 5 cut(s) 47, 543, 566, 1058, 1095
StyD4I CCNGG 1 cut(s) 1142
TaaI ACNGT 2 cut(s) 389, 1160
TaiI ACGT 2 cut(s) 38, 261
TaqI TCGA 6 cut(s) 22, 39, 120, 396, 607, 1013
TasI AATT 9 cut(s) 190, 363, 419, 523, 612, 668, 705, 1062, 1128
TatI WGTACW 1 cut(s) 389
TauI GCSGC 1 cut(s) 1236
TfiI GAWTC 5 cut(s) 185, 503, 880, 911, 1103
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 4 cut(s) 362, 646, 1165, 1210
TseI GCWGC 4 cut(s) 452, 569, 602, 1139
TspDTI ATGAA 7 cut(s) 432, 485, 516, 681, 903, 1194, 1200
TspGWI ACGGA 4 cut(s) 72, 892, 953, 1007
TspRI CASTG 4 cut(s) 362, 646, 1165, 1210
VpaK11BI GGWCC 3 cut(s) 99, 229, 238
XapI RAATTY 3 cut(s) 190, 419, 668
XbaI TCTAGA 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 1261
XmnI GAANNNNTTC 2 cut(s) 536, 1216
XspI CTAG 5 cut(s) 47, 543, 566, 1058, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.