Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011904.1

Orthogroup ID

OG0006057

Physical Location & Seq

Genomic Coordinates Reverse (-)

27510 .. 29483

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011904.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

atggaagagagtttcagcgttcgagtaagcaaaacgttcgatattctagatggctcatcaccatcagcgacagcgagtgctccgtcttcgtcgctgtggtccctaacaggtgaggaaatcgagaagagagaatggaacagggacaaggggagccccgaaccccaaccccgaccctgcaacccagattcaaattcaaaggacgatttcttcggtaacgagctggagaaggaccttctggaccttgacgacgatgacgtggaagaagaagaagaagacgaggtggatgatttcttcggtaacgagctggagaaggaccttctggaccttgacgacgacgacgacgacgtggaagaagaagaagaagacgaggtggtggaggagcaatctgctaagcctaagccgaagccgaagcctatgccggatgattataacgaggagcagtggcaaattaaaacctgcattggcttggactgtactctcgaccacgaggaagaggaagatgaatttgacaaagtggctgttggcaagggaaatgctgcagaccgcttttatatgaaggatgtaaatgactatccgatagacattgattctcaatacgaggttcccaattcattgaacgatttcactagagaccctcgcgccaatcacctagcagctaagattagactccaactggatgcagaagcagctcgaaaaattgactccttgcgggtctctgggaacactgcaccatccggtgctatagctgatgaattcgtcccgtcagaagatgctatcaacctgaaatcaattttgaagaggaaaaatgatgagcagttaggctcatctaaatcacaaaagcgtgttcggtttgaccctgagtgtaaagatgattgcgatggagagcctgatggatccaaagatatacctgtgaaaagcctttcaggtgaagatcatgtgtctgcagttccagattacatacggaatccatcaagatatacacattatacatttgattcatcaactgacatggatgaggaagctaacaggcaagcctatatggatttccgtaatcttttggggatgtcaaatactacggatgcagaagtttcaaaaccgatcatattcacaccaaaaaagaaatcaactgatgcgacaatgctagaaattgatggggagtcggagagaccagtaggtgctagtaaggaatccgcgtcttacagagtcgtgccaattgctattgcagccagggatcacgaagacagtgatgtgtgtgcaatggatgaagatgaaccagatatagaaaccagtggaagaacaagttcacagaggattggccgccagtttcgtacaagaaccagtttagagttggatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

452

Amino Acids

50.85

Weight (kDa)

4.25

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13970
fragaria_vesca	FvH4_6g20211 FvH4_6g54290
malus_domestica	MD09G1002700.v1.1 MD17G1006900.v1.1
prunus_persica	Prupe.3G313500_v2.0.a1
pyrus_communis	pycom111g00220 pycom17g00250
rosa_chinensis	RchiOBHm_Chr2g0176501 RchiOBHm_Chr3g0475791
rosa_laevigata	RLG00000022418 RLG00000023817
rosa_multiflora	Rmu_sc0000539.1_g000083 Rmu_sc0011904.1_g000011
rosa_roxburghii	Rroxscaffold_2G00076360 Rroxscaffold_6G00405880
rosa_rugosa	Rorug02G0595200 Rorug02G0595300 Rorug03G0151700
rosa_samantha	Rh2AG673500 Rh2CG647500 Rh2DG698400 Rh3AG201200 Rh3CG226300 Rh3DG226800
rosa_wichuraiana	Rw2G055240 Rw3G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
Acc36I	ACCTGC	1 cut(s)	464
AccII	CGCG	2 cut(s)	639, 1193
AciI	CCGC	4 cut(s)	544, 709, 1191, 1318
AclI	AACGTT	1 cut(s)	35
AclWI	GGATC	3 cut(s)	888, 901, 1239
AcoI	YGGCCR	1 cut(s)	1315
AcsI	RAATTY	3 cut(s)	190, 503, 752
AfaI	GTAC	2 cut(s)	475, 1330
AgsI	TTSAA	5 cut(s)	189, 195, 616, 796, 1092
AjiI	CACGTC	2 cut(s)	256, 346
AjnI	CCWGG	1 cut(s)	1226
AluBI	AGCT	6 cut(s)	220, 304, 656, 689, 746, 1022
AluI	AGCT	6 cut(s)	220, 304, 656, 689, 746, 1022
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	3 cut(s)	624, 718, 1159
AlwI	GGATC	3 cut(s)	888, 901, 1239
AoxI	GGCC	1 cut(s)	1315
ApeKI	GCWGC	4 cut(s)	536, 653, 686, 1223
ApoI	RAATTY	3 cut(s)	190, 503, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	2 cut(s)	620, 1300
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	5 cut(s)	99, 229, 238, 313, 322
AsuHPI	GGTGA	4 cut(s)	51, 122, 638, 938
AvaII	GGWCC	5 cut(s)	99, 229, 238, 313, 322
BamHI	GGATCC	1 cut(s)	893
BanII	GRGCYC	1 cut(s)	155
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	4 cut(s)	78, 279, 369, 1245
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	4 cut(s)	523, 665, 698, 1235
BccI	CCATC	7 cut(s)	44, 70, 739, 872, 884, 976, 1145
BcgI	CGANNNNNNTGC	4 cut(s)	19, 53, 397, 431
BciT130I	CCWGG	1 cut(s)	1228
BcoDI	GTCTC	3 cut(s)	624, 718, 1159
BfaI	CTAG	5 cut(s)	47, 627, 650, 1142, 1179
BfmI	CTRYAG	3 cut(s)	537, 741, 942
BfuAI	ACCTGC	1 cut(s)	464
BisI	GCNGC	5 cut(s)	537, 654, 687, 1224, 1318
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	5 cut(s)	538, 655, 688, 1225, 1319
Bme1390I	CCNGG	1 cut(s)	1228
Bme18I	GGWCC	5 cut(s)	99, 229, 238, 313, 322
BmgBI	CACGTC	2 cut(s)	256, 346
BmgT120I	GGNCC	5 cut(s)	99, 229, 238, 313, 322
BmiI	GGNNCC	4 cut(s)	101, 152, 603, 895
BmrFI	CCNGG	1 cut(s)	1228
BmsI	GCATC	4 cut(s)	667, 760, 1069, 1120
BpiI	GAAGAC	4 cut(s)	78, 279, 369, 1245
BpmI	CTGGAG	2 cut(s)	242, 326
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	390
BsaI	GGTCTC	3 cut(s)	624, 718, 1159
BsaJI	CCNNGG	1 cut(s)	1227
BsaWI	WCCGGW	1 cut(s)	734
Bse1I	ACTGG	5 cut(s)	678, 1169, 1287, 1321, 1338
Bse3DI	GCAATG	1 cut(s)	1263
BseBI	CCWGG	1 cut(s)	1228
BseDI	CCNNGG	1 cut(s)	1227
BseMI	GCAATG	1 cut(s)	1263
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	5 cut(s)	678, 1169, 1287, 1321, 1338
BseRI	GAGGAG	2 cut(s)	392, 449
BseXI	GCAGC	4 cut(s)	523, 665, 698, 1235
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	2 cut(s)	639, 1193
BshFI	GGCC	1 cut(s)	1317
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	419, 735
BslFI	GGGAC	3 cut(s)	85, 155, 743
BsmAI	GTCTC	3 cut(s)	624, 718, 1159
BsmFI	GGGAC	3 cut(s)	85, 155, 743
BsnI	GGCC	1 cut(s)	1317
Bso31I	GGTCTC	3 cut(s)	624, 718, 1159
Bsp1286I	GDGCHC	2 cut(s)	82, 155
Bsp143I	GATC	4 cut(s)	893, 931, 1098, 1231
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	4 cut(s)	544, 709, 1191, 1318
BspANI	GGCC	1 cut(s)	1317
BspCNI	CTCAG	1 cut(s)	850
BspFNI	CGCG	2 cut(s)	639, 1193
BspLI	GGNNCC	4 cut(s)	101, 152, 603, 895
BspMAI	CTGCAG	2 cut(s)	541, 946
BspMI	ACCTGC	1 cut(s)	464
BspPI	GGATC	3 cut(s)	888, 901, 1239
BspTNI	GGTCTC	3 cut(s)	624, 718, 1159
BsrDI	GCAATG	1 cut(s)	1263
BsrI	ACTGG	5 cut(s)	678, 1169, 1287, 1321, 1338
BssECI	CCNNGG	1 cut(s)	1227
BssMI	GATC	4 cut(s)	893, 931, 1098, 1231
BssSI	CACGAG	1 cut(s)	485
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	1228
Bst4CI	ACNGT	2 cut(s)	473, 1244
Bst6I	CTCTTC	3 cut(s)	119, 486, 791
BstC8I	GCNNGC	1 cut(s)	1032
BstDEI	CTNAG	4 cut(s)	390, 396, 657, 858
BstFNI	CGCG	2 cut(s)	639, 1193
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	4 cut(s)	896, 934, 1101, 1234
BstMAI	GTCTC	3 cut(s)	624, 718, 1159
BstMBI	GATC	4 cut(s)	893, 931, 1098, 1231
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 1223
BstNI	CCWGG	1 cut(s)	1228
BstSCI	CCNGG	1 cut(s)	1226
BstSFI	CTRYAG	3 cut(s)	537, 741, 942
BstUI	CGCG	2 cut(s)	639, 1193
BstV1I	GCAGC	4 cut(s)	523, 665, 698, 1235
BstV2I	GAAGAC	4 cut(s)	78, 279, 369, 1245
BstX2I	RGATCY	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	893
BsuRI	GGCC	1 cut(s)	1317
BtgZI	GCGATG	1 cut(s)	891
BtrI	CACGTC	2 cut(s)	256, 346
BtsI	GCAGTG	2 cut(s)	446, 723
BtsIMutI	CAGTG	4 cut(s)	446, 723, 1249, 1294
BveI	ACCTGC	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	1032
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	5 cut(s)	99, 229, 238, 313, 322
CseI	GACGC	1 cut(s)	1182
Csp6I	GTAC	2 cut(s)	474, 1329
CviAII	CATG	2 cut(s)	935, 1009
CviQI	GTAC	2 cut(s)	474, 1329
DdeI	CTNAG	4 cut(s)	390, 396, 657, 858
DpnI	GATC	4 cut(s)	895, 933, 1100, 1233
DpnII	GATC	4 cut(s)	893, 931, 1098, 1231
EaeI	YGGCCR	1 cut(s)	1315
Eam1104I	CTCTTC	3 cut(s)	119, 486, 791
EarI	CTCTTC	3 cut(s)	119, 486, 791
Eco24I	GRGCYC	1 cut(s)	155
Eco31I	GGTCTC	3 cut(s)	624, 718, 1159
Eco47I	GGWCC	5 cut(s)	99, 229, 238, 313, 322
EcoO109I	RGGNCCY	2 cut(s)	229, 313
EcoRI	GAATTC	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	1226
EcoT38I	GRGCYC	1 cut(s)	155
FaeI	CATG	2 cut(s)	938, 1012
FaqI	GGGAC	3 cut(s)	85, 155, 743
FatI	CATG	2 cut(s)	934, 1008
FauI	CCCGC	1 cut(s)	702
Fnu4HI	GCNGC	5 cut(s)	537, 654, 687, 1224, 1318
FokI	GGATG	9 cut(s)	296, 434, 572, 689, 718, 1025, 1075, 1091, 1274
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	5 cut(s)	537, 654, 687, 1224, 1318
FspBI	CTAG	5 cut(s)	47, 627, 650, 1142, 1179
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	5 cut(s)	537, 654, 687, 1224, 1318
GsuI	CTGGAG	2 cut(s)	242, 326
HaeIII	GGCC	1 cut(s)	1317
HapII	CCGG	2 cut(s)	419, 735
HgaI	GACGC	1 cut(s)	1182
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	2 cut(s)	938, 1012
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HinfI	GANTC	9 cut(s)	185, 587, 666, 701, 964, 995, 1157, 1187, 1203
HpaII	CCGG	2 cut(s)	419, 735
HphI	GGTGA	4 cut(s)	51, 122, 638, 938
Hpy166II	GTNNAC	1 cut(s)	1304
Hpy188I	TCNGA	3 cut(s)	576, 766, 1162
Hpy188III	TCNNGA	8 cut(s)	47, 121, 236, 320, 479, 950, 972, 1235
Hpy8I	GTNNAC	1 cut(s)	1304
Hpy99I	CGWCG	7 cut(s)	94, 251, 335, 338, 341, 344, 347
HpyAV	CCTTC	5 cut(s)	220, 242, 304, 326, 550
HpyCH4III	ACNGT	2 cut(s)	473, 1244
HpyCH4IV	ACGT	3 cut(s)	35, 255, 345
HpyCH4V	TGCA	9 cut(s)	177, 459, 539, 680, 728, 944, 1082, 1223, 1256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 1223
HpyF3I	CTNAG	4 cut(s)	390, 396, 657, 858
HpySE526I	ACGT	3 cut(s)	35, 255, 345
Hsp92II	CATG	2 cut(s)	938, 1012
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	893, 931, 1098, 1231
LmnI	GCTCC	4 cut(s)	85, 150, 379, 436
Lsp1109I	GCAGC	4 cut(s)	523, 665, 698, 1235
LweI	GCATC	4 cut(s)	667, 760, 1069, 1120
MaeI	CTAG	5 cut(s)	47, 627, 650, 1142, 1179
MaeII	ACGT	3 cut(s)	35, 255, 345
MaeIII	GTNAC	2 cut(s)	212, 296
MalI	GATC	4 cut(s)	895, 933, 1100, 1233
MboI	GATC	4 cut(s)	893, 931, 1098, 1231
MfeI	CAATTG	1 cut(s)	1212
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	2 cut(s)	82, 155
MluCI	AATT	9 cut(s)	190, 447, 503, 607, 696, 752, 789, 1146, 1212
MlyI	GAGTC	4 cut(s)	660, 695, 1166, 1212
MmeI	TCCRAC	3 cut(s)	694, 1140, 1329
MroXI	GAANNNNTTC	2 cut(s)	620, 1300
MseI	TTAA	1 cut(s)	450
MspI	CCGG	2 cut(s)	419, 735
MspR9I	CCNGG	1 cut(s)	1228
MunI	CAATTG	1 cut(s)	1212
MvaI	CCWGG	1 cut(s)	1228
MvnI	CGCG	2 cut(s)	639, 1193
MwoI	GCNNNNNNNGC	2 cut(s)	686, 1223
NdeII	GATC	4 cut(s)	893, 931, 1098, 1231
NlaIII	CATG	2 cut(s)	938, 1012
NlaIV	GGNNCC	4 cut(s)	101, 152, 603, 895
PcsI	WCGNNNNNNNCGW	4 cut(s)	252, 336, 339, 342
PdmI	GAANNNNTTC	2 cut(s)	620, 1300
PfeI	GAWTC	5 cut(s)	185, 587, 964, 995, 1187
PkrI	GCNGC	5 cut(s)	538, 655, 688, 1225, 1319
PleI	GAGTC	4 cut(s)	660, 695, 1165, 1211
PpsI	GAGTC	4 cut(s)	660, 695, 1165, 1211
PpuMI	RGGWCCY	2 cut(s)	229, 313
PsiI	TTATAA	1 cut(s)	429
Psp1406I	AACGTT	1 cut(s)	35
Psp5II	RGGWCCY	2 cut(s)	229, 313
Psp6I	CCWGG	1 cut(s)	1226
PspGI	CCWGG	1 cut(s)	1226
PspN4I	GGNNCC	4 cut(s)	101, 152, 603, 895
PspPI	GGNCC	5 cut(s)	99, 229, 238, 313, 322
PspPPI	RGGWCCY	2 cut(s)	229, 313
PstI	CTGCAG	2 cut(s)	541, 946
PsuI	RGATCY	1 cut(s)	893
RsaI	GTAC	2 cut(s)	475, 1330
RsaNI	GTAC	2 cut(s)	474, 1329
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	5 cut(s)	537, 654, 687, 1224, 1318
Sau3AI	GATC	4 cut(s)	893, 931, 1098, 1231
Sau96I	GGNCC	5 cut(s)	99, 229, 238, 313, 322
SchI	GAGTC	4 cut(s)	660, 695, 1166, 1212
ScrFI	CCNGG	1 cut(s)	1228
SduI	GDGCHC	2 cut(s)	82, 155
SfaNI	GCATC	4 cut(s)	667, 760, 1069, 1120
SfcI	CTRYAG	3 cut(s)	537, 741, 942
SinI	GGWCC	5 cut(s)	99, 229, 238, 313, 322
Sse9I	AATT	9 cut(s)	190, 447, 503, 607, 696, 752, 789, 1146, 1212
SsiI	CCGC	4 cut(s)	544, 709, 1191, 1318
SspMI	CTAG	5 cut(s)	47, 627, 650, 1142, 1179
StyD4I	CCNGG	1 cut(s)	1226
TaaI	ACNGT	2 cut(s)	473, 1244
TaiI	ACGT	3 cut(s)	38, 258, 348
TaqI	TCGA	5 cut(s)	22, 39, 120, 480, 691
TasI	AATT	9 cut(s)	190, 447, 503, 607, 696, 752, 789, 1146, 1212
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	1 cut(s)	1320
TfiI	GAWTC	5 cut(s)	185, 587, 964, 995, 1187
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	4 cut(s)	446, 730, 1249, 1294
TseI	GCWGC	4 cut(s)	536, 653, 686, 1223
TspDTI	ATGAA	7 cut(s)	516, 569, 600, 765, 987, 1278, 1284
TspGWI	ACGGA	4 cut(s)	72, 976, 1037, 1091
TspRI	CASTG	4 cut(s)	446, 730, 1249, 1294
VpaK11BI	GGWCC	5 cut(s)	99, 229, 238, 313, 322
XapI	RAATTY	3 cut(s)	190, 503, 752
XbaI	TCTAGA	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1345
XmnI	GAANNNNTTC	2 cut(s)	620, 1300
XspI	CTAG	5 cut(s)	47, 627, 650, 1142, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.