Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006057

Physical Location & Seq

Genomic Coordinates Forward (+)

27126745 .. 27128762

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G313500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAAGACACTTTCAGAGTCCGAGTAGGCAAAGTCTTCGGCTCCTTGGCCGGTACACCATCGAGCGGTCCATCTTCGTCTTTGAGCTCGCTATGGTCCCTAACAGACGAGGAAATCGAGAAGAGGGAATGGAACAGAGACAAGGACAGCCCCGAACCCGAACTCGAACTCGAACTCCAACCCCAACCCTACAACTTAAACTCAAAGGGTGATTTCAGTAACGAGCTGGAGAAGGACCTTCTAGACCTGGACGAGGATGTGGAAGAGGAAGAGGAAGAGGAAGACGAGGAGCAACAGCCCAGTGAGTCGGCTAATAAGCATAAGCCAGACGACTATAACGACGAGGAGTGGGAAATTAAATCCTCTATCGGCTTGGACTGTACTCTCGACTACGAGGAAGAGGAAGATGGATATGACAAAGTTGCTGTTGGCAAGGAAAATGCTGGAGATCGCTTGTATATGAGAGATGTAAACGACTATGGGATAGACATAGATTCTCAAGAGGAGGTTCCTACTTCCTTTAAGGATTTTACTCGAGACCCACGTGCTAATCACCTGGCGGCTAAGATTAGGCTCCAACAAGATGCAGAGGCAGCTGCTCAAATTAGGCTCCAAGAGGATGCCGAAGCAGCTCAAAAAATTGTCTCCCTGAGGGTTTCCGGGAACAATACACCATATGCTATAGCTGCTGAAATCATCACATCTGAAGATGCTACTAACCTAAAATCAATTCTGAAGAGGAAGACGGATAATCAGTTAGACCCATCAAAATCACAAAAACGTGTCCGGTTTGATCCCGACTGCAAAAGTAATTGTCATGATGAAGGTGAGGGAGCCAAAGATATTCCTGTGCAAACTCATTCAAATGAAGATCATCCATCTGGAGTTCCAGATTATCTACGGAATCCTTCAAGATATACACATTATACGTTTGATTCGTCAAGTGACGGGGATGAGGAATCAAACAAGCAAGCCTATATGGACTTCCTTAATCTGTTGAGGAAGTCAAATCCTATGGAACCACAGGCAGAGGATGCTTTTGTTGATCTGTCAAAACCAGTCACATTTATACCAAGAAAAAAATCAACTGATGCTATAATGCAGGAAAATGATGGGGAGTTAGGGAGACTAGGAAGTGCTCGTCAGGAATTTGTGCCTTGCAGAAGCACGCCACTAGCCATTGCAACTGAGGACAACGAAGATGTTTGTGCAATGGAGGAAGATGAACCAGAGACAGCAACTGATGGTAGAACCTGTTTACAGAGAACTGGACGTCAATACCGTACAAAAACCAGGTCGGAGTTAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

438

Amino Acids

49.43

Weight (kDa)

4.4

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13970
fragaria_vesca	FvH4_6g20211 FvH4_6g54290
malus_domestica	MD09G1002700.v1.1 MD17G1006900.v1.1
prunus_persica	Prupe.3G313500_v2.0.a1
pyrus_communis	pycom111g00220 pycom17g00250
rosa_chinensis	RchiOBHm_Chr2g0176501 RchiOBHm_Chr3g0475791
rosa_laevigata	RLG00000022418 RLG00000023817
rosa_multiflora	Rmu_sc0000539.1_g000083 Rmu_sc0011904.1_g000011
rosa_roxburghii	Rroxscaffold_2G00076360 Rroxscaffold_6G00405880
rosa_rugosa	Rorug02G0595200 Rorug02G0595300 Rorug03G0151700
rosa_samantha	Rh2AG673500 Rh2CG647500 Rh2DG698400 Rh3AG201200 Rh3CG226300 Rh3DG226800
rosa_wichuraiana	Rw2G055240 Rw3G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1276
AccBSI	CCGCTC	1 cut(s)	66
AciI	CCGC	2 cut(s)	66, 560
AclWI	GGATC	1 cut(s)	788
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	1148
AcuI	CTGAAG	2 cut(s)	726, 755
AcvI	CACGTG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	1273
AfaI	GTAC	3 cut(s)	55, 382, 1285
AfiI	CCNNNNNNNGG	2 cut(s)	65, 253
AflIII	ACRYGT	1 cut(s)	781
AgsI	TTSAA	2 cut(s)	864, 912
AjnI	CCWGG	3 cut(s)	246, 555, 1292
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	5 cut(s)	87, 226, 596, 632, 686
AluI	AGCT	5 cut(s)	87, 226, 596, 632, 686
Alw21I	GWGCWC	2 cut(s)	89, 1141
Alw26I	GTCTC	5 cut(s)	132, 531, 649, 1120, 1226
AlwI	GGATC	1 cut(s)	788
AlwNI	CAGNNNCTG	1 cut(s)	1241
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	4 cut(s)	593, 596, 629, 686
ApoI	RAATTY	1 cut(s)	1148
ArsI	GACNNNNNNTTYG	2 cut(s)	1280, 1312
AspS9I	GGNCC	3 cut(s)	68, 96, 235
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	3 cut(s)	221, 545, 839
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	3 cut(s)	68, 96, 235
AxyI	CCTNAGG	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	89
BbrPI	CACGTG	1 cut(s)	545
BbsI	GAAGAC	4 cut(s)	12, 28, 288, 749
Bbv12I	GWGCWC	2 cut(s)	89, 1141
BbvI	GCAGC	4 cut(s)	583, 605, 641, 673
BccI	CCATC	7 cut(s)	67, 79, 401, 772, 886, 1106, 1238
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	3 cut(s)	248, 557, 1294
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	5 cut(s)	132, 531, 649, 1120, 1226
BfaI	CTAG	3 cut(s)	242, 1130, 1175
BfmI	CTRYAG	1 cut(s)	681
BisI	GCNGC	5 cut(s)	561, 594, 597, 630, 687
BlsI	GCNGC	5 cut(s)	562, 595, 598, 631, 688
Bme1390I	CCNGG	4 cut(s)	248, 557, 661, 1294
Bme18I	GGWCC	3 cut(s)	68, 96, 235
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	3 cut(s)	68, 96, 235
BmiI	GGNNCC	7 cut(s)	43, 98, 510, 575, 611, 835, 1020
BmrFI	CCNGG	4 cut(s)	248, 557, 661, 1294
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	5 cut(s)	574, 610, 700, 1024, 1081
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	4 cut(s)	12, 28, 288, 749
BpmI	CTGGAG	3 cut(s)	248, 465, 903
BpuEI	CTTGAG	1 cut(s)	483
BpuMI	CCSGG	1 cut(s)	661
BsaAI	YACGTR	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	1273
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	786
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 253
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	3 cut(s)	300, 1058, 1273
Bse21I	CCTNAGG	1 cut(s)	650
Bse3DI	GCAATG	2 cut(s)	1179, 1218
BseBI	CCWGG	3 cut(s)	248, 557, 1294
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	5 cut(s)	262, 625, 874, 958, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	65, 253
BseMI	GCAATG	2 cut(s)	1179, 1218
BseMII	CTCAG	2 cut(s)	641, 1179
BseNI	ACTGG	3 cut(s)	300, 1058, 1273
BseRI	GAGGAG	3 cut(s)	302, 359, 518
BseXI	GCAGC	4 cut(s)	583, 605, 641, 673
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	89, 1141
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	3 cut(s)	51, 660, 787
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	65, 253
BsmAI	GTCTC	5 cut(s)	132, 531, 649, 1120, 1226
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	531
BsoBI	CYCGRG	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	89, 1141
Bsp143I	GATC	4 cut(s)	448, 793, 871, 1045
BspACI	CCGC	2 cut(s)	66, 560
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	642, 1180
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	7 cut(s)	43, 98, 510, 575, 611, 835, 1020
BspPI	GGATC	1 cut(s)	788
BspTNI	GGTCTC	1 cut(s)	531
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	1179, 1218
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	300, 1058, 1273
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	4 cut(s)	448, 793, 871, 1045
BssNI	GRCGYC	1 cut(s)	1273
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	248, 557, 1294
Bst4CI	ACNGT	2 cut(s)	380, 1283
Bst6I	CTCTTC	6 cut(s)	116, 258, 264, 270, 393, 731
BstACI	GRCGYC	1 cut(s)	1273
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	89, 972, 1169
BstDEI	CTNAG	3 cut(s)	564, 650, 1188
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	5 cut(s)	262, 625, 874, 958, 1039
BstKTI	GATC	4 cut(s)	451, 796, 874, 1048
BstMAI	GTCTC	5 cut(s)	132, 531, 649, 1120, 1226
BstMBI	GATC	4 cut(s)	448, 793, 871, 1045
BstMWI	GCNNNNNNNGC	4 cut(s)	593, 629, 686, 1034
BstNI	CCWGG	3 cut(s)	248, 557, 1294
BstSCI	CCNGG	4 cut(s)	246, 555, 659, 1292
BstSFI	CTRYAG	1 cut(s)	681
BstV1I	GCAGC	4 cut(s)	583, 605, 641, 673
BstV2I	GAAGAC	4 cut(s)	12, 28, 288, 749
Bsu36I	CCTNAGG	1 cut(s)	650
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	5 cut(s)	262, 625, 874, 958, 1039
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	3 cut(s)	89, 972, 1169
CaiI	CAGNNNCTG	1 cut(s)	1241
CciI	TCATGA	1 cut(s)	817
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	68, 96, 235
CsiI	ACCWGGT	1 cut(s)	1292
Csp6I	GTAC	3 cut(s)	54, 381, 1284
CviAII	CATG	1 cut(s)	818
CviQI	GTAC	3 cut(s)	54, 381, 1284
DdeI	CTNAG	3 cut(s)	564, 650, 1188
DpnI	GATC	4 cut(s)	450, 795, 873, 1047
DpnII	GATC	4 cut(s)	448, 793, 871, 1045
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	6 cut(s)	116, 258, 264, 270, 393, 731
EarI	CTCTTC	6 cut(s)	116, 258, 264, 270, 393, 731
Ecl136II	GAGCTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	3 cut(s)	68, 96, 235
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	726, 755
Eco72I	CACGTG	1 cut(s)	545
Eco81I	CCTNAGG	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	246, 555, 1292
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	821
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	817
FauNDI	CATATG	1 cut(s)	676
Fnu4HI	GCNGC	5 cut(s)	561, 594, 597, 630, 687
FokI	GGATG	5 cut(s)	269, 632, 861, 965, 1046
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	5 cut(s)	561, 594, 597, 630, 687
FspBI	CTAG	3 cut(s)	242, 1130, 1175
GluI	GCNGC	5 cut(s)	561, 594, 597, 630, 687
GsuI	CTGGAG	3 cut(s)	248, 465, 903
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	3 cut(s)	51, 660, 787
Hin1I	GRCGYC	1 cut(s)	1273
Hin1II	CATG	1 cut(s)	821
HinfI	GANTC	6 cut(s)	18, 305, 494, 904, 935, 959
HpaII	CCGG	3 cut(s)	51, 660, 787
HphI	GGTGA	3 cut(s)	221, 545, 839
Hpy166II	GTNNAC	3 cut(s)	56, 472, 1259
Hpy188I	TCNGA	5 cut(s)	17, 23, 706, 735, 1300
Hpy8I	GTNNAC	3 cut(s)	56, 472, 1259
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	4 cut(s)	226, 248, 818, 918
HpyCH4III	ACNGT	2 cut(s)	380, 1283
HpyCH4IV	ACGT	4 cut(s)	544, 781, 929, 1273
HpyCH4V	TGCA	7 cut(s)	587, 804, 853, 1102, 1161, 1184, 1211
HpyF10VI	GCNNNNNNNGC	4 cut(s)	593, 629, 686, 1034
HpyF3I	CTNAG	3 cut(s)	564, 650, 1188
HpySE526I	ACGT	4 cut(s)	544, 781, 929, 1273
Hsp92I	GRCGYC	1 cut(s)	1273
Hsp92II	CATG	1 cut(s)	821
Kzo9I	GATC	4 cut(s)	448, 793, 871, 1045
LmnI	GCTCC	5 cut(s)	47, 289, 579, 615, 833
Lsp1109I	GCAGC	4 cut(s)	583, 605, 641, 673
LweI	GCATC	5 cut(s)	574, 610, 700, 1024, 1081
MabI	ACCWGGT	1 cut(s)	1292
MaeI	CTAG	3 cut(s)	242, 1130, 1175
MaeII	ACGT	4 cut(s)	544, 781, 929, 1273
MaeIII	GTNAC	3 cut(s)	218, 944, 1060
MalI	GATC	4 cut(s)	450, 795, 873, 1047
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	4 cut(s)	448, 793, 871, 1045
MhlI	GDGCHC	2 cut(s)	89, 1141
MluCI	AATT	6 cut(s)	354, 603, 639, 729, 811, 1148
MlyI	GAGTC	2 cut(s)	27, 314
MmeI	TCCRAC	3 cut(s)	202, 601, 1278
MseI	TTAA	4 cut(s)	197, 357, 522, 990
MslI	CAYNNNNRTG	1 cut(s)	864
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	3 cut(s)	51, 660, 787
MspR9I	CCNGG	4 cut(s)	248, 557, 661, 1294
MvaI	CCWGG	3 cut(s)	248, 557, 1294
MwoI	GCNNNNNNNGC	4 cut(s)	593, 629, 686, 1034
NciI	CCSGG	1 cut(s)	661
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	4 cut(s)	448, 793, 871, 1045
NlaIII	CATG	1 cut(s)	821
NlaIV	GGNNCC	7 cut(s)	43, 98, 510, 575, 611, 835, 1020
NmuCI	GTSAC	2 cut(s)	944, 1060
PaeR7I	CTCGAG	1 cut(s)	534
PagI	TCATGA	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	5 cut(s)	114, 336, 541, 935, 1279
PfeI	GAWTC	4 cut(s)	494, 904, 935, 959
PfoI	TCCNGGA	1 cut(s)	659
PkrI	GCNGC	5 cut(s)	562, 595, 598, 631, 688
PleI	GAGTC	2 cut(s)	26, 313
PmaCI	CACGTG	1 cut(s)	545
PmlI	CACGTG	1 cut(s)	545
PpsI	GAGTC	2 cut(s)	26, 313
Ppu21I	YACGTR	1 cut(s)	545
PpuMI	RGGWCCY	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	3 cut(s)	246, 555, 1292
PspCI	CACGTG	1 cut(s)	545
PspGI	CCWGG	3 cut(s)	246, 555, 1292
PspN4I	GGNNCC	7 cut(s)	43, 98, 510, 575, 611, 835, 1020
PspPI	GGNCC	3 cut(s)	68, 96, 235
PspPPI	RGGWCCY	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	1241
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	3 cut(s)	55, 382, 1285
RsaNI	GTAC	3 cut(s)	54, 381, 1284
RseI	CAYNNNNRTG	1 cut(s)	864
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	197, 357, 522, 990
SatI	GCNGC	5 cut(s)	561, 594, 597, 630, 687
Sau3AI	GATC	4 cut(s)	448, 793, 871, 1045
Sau96I	GGNCC	3 cut(s)	68, 96, 235
SchI	GAGTC	2 cut(s)	27, 314
ScrFI	CCNGG	4 cut(s)	248, 557, 661, 1294
SduI	GDGCHC	2 cut(s)	89, 1141
SexAI	ACCWGGT	1 cut(s)	1292
SfaNI	GCATC	5 cut(s)	574, 610, 700, 1024, 1081
SfcI	CTRYAG	1 cut(s)	681
Sfr274I	CTCGAG	1 cut(s)	534
SinI	GGWCC	3 cut(s)	68, 96, 235
SlaI	CTCGAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	2 cut(s)	498, 534
SmoI	CTYRAG	2 cut(s)	498, 534
Sse9I	AATT	6 cut(s)	354, 603, 639, 729, 811, 1148
SsiI	CCGC	2 cut(s)	66, 560
SspMI	CTAG	3 cut(s)	242, 1130, 1175
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	4 cut(s)	246, 555, 659, 1292
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	380, 1283
TaiI	ACGT	4 cut(s)	547, 784, 932, 1276
TaqI	TCGA	6 cut(s)	62, 117, 165, 171, 387, 535
TasI	AATT	6 cut(s)	354, 603, 639, 729, 811, 1148
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	4 cut(s)	494, 904, 935, 959
Tru1I	TTAA	4 cut(s)	197, 357, 522, 990
Tru9I	TTAA	4 cut(s)	197, 357, 522, 990
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	2 cut(s)	944, 1060
TseI	GCWGC	4 cut(s)	593, 596, 629, 686
Tsp45I	GTSAC	2 cut(s)	944, 1060
TspDTI	ATGAA	3 cut(s)	837, 882, 1239
TspGWI	ACGGA	2 cut(s)	761, 916
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	68, 96, 235
XagI	CCTNNNNNAGG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	1148
XbaI	TCTAGA	1 cut(s)	241
XhoI	CTCGAG	1 cut(s)	534
XspI	CTAG	3 cut(s)	242, 1130, 1175
ZraI	GACGTC	1 cut(s)	1274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.