Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0006057

Physical Location & Seq

Genomic Coordinates Reverse (-)

175738 .. 177229

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGAAGACACGTTTAGGGTTCGAGTAGGCAAAATCTTCGGCTCACTCGCCAGTTCGTCGCCGTCGCCATCGAGCGGTCCACCGTCGTCCCTGAGTTCGCTATGGTCCCTAACAGACGAGGAAATGGAGAGGAGGGAATGGAACAGAGACATGGGCAGCCCTGAACCCGAAGCTGAACCCCTACCCTTCTACTCAAAATCAAAGCCAAAGTCAAAGAATGATTTCAGTGACGACGTGGAGGAGGACCTTCTAGACCTTGACGACGACGTGGAAGACAAAGAAGAAGACGAGCAGGAAGAGGCATCTGCTTCTTCTTCCAGTCAGCCTGCAACAAAGCCCAAGCCAGACGACTACAACGAAGAGGAGTGGGAAATTAAATCCTCAATCGGCTGGGACTGTACTCTCGACTTCGAGGATGAGGAAGATGGATATGACAAAGTGGCTGTTGGCAAGGAAACCGCTGGAGATCGCTTGTATATGAGGGATGTCAACGACTATGGTATCGACATAGACACTCAAGATGAGGTTCCTAGTTCCATCAAGGATTTCACTAGAGACCCACGTGCCAATCACCTGGCAGCTAAGATTAGGCTCCAACAAGATGCTGAAGCAGCTCAAAAAATTGACTCCCTCAGGGTTTCTGGGAACCGCGCACCATCTGCCATACCTGCTGAAAACATCTCTGAAGATACACCCAACCCGAAGTCGATTCTGAAGAGGAAGAATGATAATCAGTTAGACTCGTCTAAAACACAAAAACGTGTCCGGTTTGATTCCAACTGCAAAAGTAATGAAGATGAAGAGGGTGAGGGAGCCAAAGATGTTACTGTAGAAACTCATTCAAATGAAAATCCTACAGTTCCGGATTATATACGAAATCCTTCAAGATATACGCATTATACGTTTGATTCATCAGCTGACGTAGATGAGGAGTCTAACAAGCAAGCCTATATGGACTTCCTTAATCTGGTGAGGAAATCAAATTCTATGGAACCACAGGCTGAGGATGTTTCTGTTGATCTTTCAAAACCTGTCACATTTATACCGAGAAAGAAATCAAGTGATGCTGTAATGATGGAATACGATGGGGAGTCAGAGAGACCGGGAGGTGATCGAAGAGAATCTGCGGCTTGCAAAGTGATGCCACTTGCCATTGCAGCGGAGGATAATGAAGATGTTTGCGCAATGGAGGAAGATGAACCGGATACAGCAACGGATGGAAGAAGCAGTATACAGAGAACTGGACGCCAATACCGGACAAAAACCAGTTTGGAATTGGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

429

Amino Acids

48.03

Weight (kDa)

4.37

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13970
fragaria_vesca	FvH4_6g20211 FvH4_6g54290
malus_domestica	MD09G1002700.v1.1 MD17G1006900.v1.1
prunus_persica	Prupe.3G313500_v2.0.a1
pyrus_communis	pycom111g00220 pycom17g00250
rosa_chinensis	RchiOBHm_Chr2g0176501 RchiOBHm_Chr3g0475791
rosa_laevigata	RLG00000022418 RLG00000023817
rosa_multiflora	Rmu_sc0000539.1_g000083 Rmu_sc0011904.1_g000011
rosa_roxburghii	Rroxscaffold_2G00076360 Rroxscaffold_6G00405880
rosa_rugosa	Rorug02G0595200 Rorug02G0595300 Rorug03G0151700
rosa_samantha	Rh2AG673500 Rh2CG647500 Rh2DG698400 Rh3AG201200 Rh3CG226300 Rh3DG226800
rosa_wichuraiana	Rw2G055240 Rw3G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1183
Acc36I	ACCTGC	1 cut(s)	676
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	1231
AccII	CGCG	1 cut(s)	651
AccIII	TCCGGA	1 cut(s)	862
AciI	CCGC	5 cut(s)	75, 459, 649, 1127, 1160
AcsI	RAATTY	1 cut(s)	982
AcuI	CTGAAG	3 cut(s)	627, 705, 734
AcvI	CACGTG	1 cut(s)	563
AcyI	GRCGYC	1 cut(s)	1246
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	2 cut(s)	74, 967
AflIII	ACRYGT	2 cut(s)	9, 760
AgsI	TTSAA	3 cut(s)	843, 885, 1026
AjiI	CACGTC	2 cut(s)	235, 268
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	4 cut(s)	173, 581, 614, 917
AluI	AGCT	4 cut(s)	173, 581, 614, 917
Alw26I	GTCTC	3 cut(s)	141, 549, 1093
Aor13HI	TCCGGA	1 cut(s)	862
ApeKI	GCWGC	4 cut(s)	156, 578, 611, 1157
ApoI	RAATTY	1 cut(s)	982
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
Asp700I	GAANNNNTTC	2 cut(s)	221, 880
AspLEI	GCGC	2 cut(s)	653, 1184
AspS9I	GGNCC	3 cut(s)	77, 105, 244
AsuC2I	CCSGG	1 cut(s)	1104
AsuHPI	GGTGA	4 cut(s)	563, 818, 982, 1121
AvaII	GGWCC	3 cut(s)	77, 105, 244
AxyI	CCTNAGG	1 cut(s)	632
BaeI	ACNNNNGTAYC	2 cut(s)	484, 517
BbrPI	CACGTG	1 cut(s)	563
BbsI	GAAGAC	3 cut(s)	12, 279, 291
BbvCI	CCTCAGC	1 cut(s)	1002
BbvI	GCAGC	4 cut(s)	168, 590, 623, 1169
BccI	CCATC	7 cut(s)	76, 419, 545, 664, 1069, 1079, 1211
BceAI	ACGGC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	1 cut(s)	1198
BcnI	CCSGG	1 cut(s)	1104
BcoDI	GTCTC	3 cut(s)	141, 549, 1093
BfaI	CTAG	3 cut(s)	251, 531, 552
BfmI	CTRYAG	2 cut(s)	828, 855
BfuAI	ACCTGC	1 cut(s)	676
BfuI	GTATCC	1 cut(s)	1198
BisI	GCNGC	5 cut(s)	157, 579, 612, 1128, 1158
BlsI	GCNGC	5 cut(s)	158, 580, 613, 1129, 1159
Bme1390I	CCNGG	2 cut(s)	575, 1104
Bme18I	GGWCC	3 cut(s)	77, 105, 244
BmgBI	CACGTC	2 cut(s)	235, 268
BmgT120I	GGNCC	3 cut(s)	77, 105, 244
BmiI	GGNNCC	6 cut(s)	107, 528, 593, 647, 814, 993
BmrFI	CCNGG	2 cut(s)	575, 1104
BmsI	GCATC	4 cut(s)	311, 592, 1054, 1131
BpiI	GAAGAC	3 cut(s)	12, 279, 291
BpmI	CTGGAG	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	1002
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	1104
BsaAI	YACGTR	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	1246
BsaI	GGTCTC	2 cut(s)	549, 1093
BsaWI	WCCGGW	4 cut(s)	765, 862, 1201, 1254
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 967
Bse1I	ACTGG	4 cut(s)	51, 318, 1246, 1266
Bse21I	CCTNAGG	1 cut(s)	632
Bse3DI	GCAATG	2 cut(s)	1152, 1191
BseAI	TCCGGA	1 cut(s)	862
BseBI	CCWGG	1 cut(s)	575
BseGI	GGATG	5 cut(s)	421, 490, 1012, 1222, 1285
BseLI	CCNNNNNNNGG	2 cut(s)	74, 967
BseMI	GCAATG	2 cut(s)	1152, 1191
BseMII	CTCAG	3 cut(s)	83, 646, 993
BseNI	ACTGG	4 cut(s)	51, 318, 1246, 1266
BseRI	GAGGAG	4 cut(s)	145, 254, 377, 944
BseXI	GCAGC	4 cut(s)	168, 590, 623, 1169
BseYI	CCCAGC	1 cut(s)	390
Bsh1236I	CGCG	1 cut(s)	651
BsiSI	CCGG	5 cut(s)	766, 863, 1103, 1202, 1255
BslFI	GGGAC	3 cut(s)	73, 91, 407
BslI	CCNNNNNNNGG	2 cut(s)	74, 967
BsmAI	GTCTC	3 cut(s)	141, 549, 1093
BsmFI	GGGAC	3 cut(s)	73, 91, 407
Bso31I	GGTCTC	2 cut(s)	549, 1093
Bsp13I	TCCGGA	1 cut(s)	862
Bsp143I	GATC	3 cut(s)	466, 1018, 1111
BspACI	CCGC	5 cut(s)	75, 459, 649, 1127, 1160
BspCNI	CTCAG	3 cut(s)	84, 645, 994
BspEI	TCCGGA	1 cut(s)	862
BspFNI	CGCG	1 cut(s)	651
BspLI	GGNNCC	6 cut(s)	107, 528, 593, 647, 814, 993
BspMI	ACCTGC	1 cut(s)	676
BspTNI	GGTCTC	2 cut(s)	549, 1093
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	1152, 1191
BsrI	ACTGG	4 cut(s)	51, 318, 1246, 1266
BssMI	GATC	3 cut(s)	466, 1018, 1111
BssNAI	GTATAC	1 cut(s)	1232
BssNI	GRCGYC	1 cut(s)	1246
Bst1107I	GTATAC	1 cut(s)	1232
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	4 cut(s)	84, 398, 829, 859
Bst6I	CTCTTC	5 cut(s)	291, 354, 710, 795, 1111
BstACI	GRCGYC	1 cut(s)	1246
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstBAI	YACGTR	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	327, 945, 1132
BstDEI	CTNAG	4 cut(s)	92, 582, 632, 1002
BstF5I	GGATG	5 cut(s)	421, 490, 1012, 1222, 1285
BstFNI	CGCG	1 cut(s)	651
BstHHI	GCGC	2 cut(s)	653, 1184
BstKTI	GATC	3 cut(s)	469, 1021, 1114
BstMAI	GTCTC	3 cut(s)	141, 549, 1093
BstMBI	GATC	3 cut(s)	466, 1018, 1111
BstMWI	GCNNNNNNNGC	4 cut(s)	611, 659, 668, 1157
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	573, 1102
BstSFI	CTRYAG	2 cut(s)	828, 855
BstUI	CGCG	1 cut(s)	651
BstV1I	GCAGC	4 cut(s)	168, 590, 623, 1169
BstV2I	GAAGAC	3 cut(s)	12, 279, 291
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstZ17I	GTATAC	1 cut(s)	1232
Bsu36I	CCTNAGG	1 cut(s)	632
BsuI	GTATCC	1 cut(s)	1198
BtrI	CACGTC	2 cut(s)	235, 268
BtsCI	GGATG	5 cut(s)	421, 490, 1012, 1222, 1285
BtsIMutI	CAGTG	1 cut(s)	232
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	3 cut(s)	327, 945, 1132
CfoI	GCGC	2 cut(s)	653, 1184
Cfr13I	GGNCC	3 cut(s)	77, 105, 244
CseI	GACGC	1 cut(s)	1254
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	4 cut(s)	92, 582, 632, 1002
DpnI	GATC	3 cut(s)	468, 1020, 1113
DpnII	GATC	3 cut(s)	466, 1018, 1111
Eam1104I	CTCTTC	5 cut(s)	291, 354, 710, 795, 1111
EarI	CTCTTC	5 cut(s)	291, 354, 710, 795, 1111
Eco31I	GGTCTC	2 cut(s)	549, 1093
Eco47I	GGWCC	3 cut(s)	77, 105, 244
Eco57I	CTGAAG	3 cut(s)	627, 705, 734
Eco72I	CACGTG	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	573
FaeI	CATG	1 cut(s)	154
FaqI	GGGAC	3 cut(s)	73, 91, 407
FatI	CATG	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	1231
Fnu4HI	GCNGC	5 cut(s)	157, 579, 612, 1128, 1158
FokI	GGATG	4 cut(s)	428, 497, 1019, 1229
Fsp4HI	GCNGC	5 cut(s)	157, 579, 612, 1128, 1158
FspBI	CTAG	3 cut(s)	251, 531, 552
FspI	TGCGCA	1 cut(s)	1183
GlaI	GCGC	2 cut(s)	652, 1183
GluI	GCNGC	5 cut(s)	157, 579, 612, 1128, 1158
GsaI	CCCAGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	483
HapII	CCGG	5 cut(s)	766, 863, 1103, 1202, 1255
HgaI	GACGC	1 cut(s)	1254
HhaI	GCGC	2 cut(s)	653, 1184
Hin1I	GRCGYC	1 cut(s)	1246
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	2 cut(s)	651, 1182
HinP1I	GCGC	2 cut(s)	651, 1182
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	8 cut(s)	626, 709, 740, 773, 908, 932, 1091, 1121
HpaII	CCGG	5 cut(s)	766, 863, 1103, 1202, 1255
HphI	GGTGA	4 cut(s)	563, 818, 982, 1121
Hpy166II	GTNNAC	3 cut(s)	80, 490, 1232
Hpy188I	TCNGA	3 cut(s)	685, 714, 1096
Hpy188III	TCNNGA	5 cut(s)	251, 404, 518, 863, 885
Hpy8I	GTNNAC	3 cut(s)	80, 490, 1232
Hpy99I	CGWCG	6 cut(s)	61, 67, 88, 236, 266, 269
HpyAV	CCTTC	3 cut(s)	196, 257, 891
HpyCH4III	ACNGT	4 cut(s)	84, 398, 829, 859
HpyCH4IV	ACGT	7 cut(s)	11, 234, 267, 562, 760, 902, 921
HpyCH4V	TGCA	4 cut(s)	329, 783, 1134, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	611, 659, 668, 1157
HpyF3I	CTNAG	4 cut(s)	92, 582, 632, 1002
HpySE526I	ACGT	7 cut(s)	11, 234, 267, 562, 760, 902, 921
Hsp92I	GRCGYC	1 cut(s)	1246
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	2 cut(s)	651, 1182
Kpn2I	TCCGGA	1 cut(s)	862
Kzo9I	GATC	3 cut(s)	466, 1018, 1111
LmnI	GCTCC	2 cut(s)	597, 812
Lsp1109I	GCAGC	4 cut(s)	168, 590, 623, 1169
LweI	GCATC	4 cut(s)	311, 592, 1054, 1131
MaeI	CTAG	3 cut(s)	251, 531, 552
MaeII	ACGT	7 cut(s)	11, 234, 267, 562, 760, 902, 921
MaeIII	GTNAC	3 cut(s)	227, 823, 1033
MalI	GATC	3 cut(s)	468, 1020, 1113
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	3 cut(s)	466, 1018, 1111
MluCI	AATT	4 cut(s)	372, 621, 982, 1274
MlyI	GAGTC	4 cut(s)	620, 734, 941, 1100
MmeI	TCCRAC	2 cut(s)	619, 801
MroI	TCCGGA	1 cut(s)	862
MroXI	GAANNNNTTC	2 cut(s)	221, 880
MseI	TTAA	2 cut(s)	375, 963
MslI	CAYNNNNRTG	1 cut(s)	843
MspA1I	CMGCKG	3 cut(s)	461, 917, 1160
MspI	CCGG	5 cut(s)	766, 863, 1103, 1202, 1255
MspR9I	CCNGG	2 cut(s)	575, 1104
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	4 cut(s)	611, 659, 668, 1157
NciI	CCSGG	1 cut(s)	1104
NdeII	GATC	3 cut(s)	466, 1018, 1111
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	6 cut(s)	107, 528, 593, 647, 814, 993
NmuCI	GTSAC	2 cut(s)	227, 1033
NsbI	TGCGCA	1 cut(s)	1183
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 899
PdmI	GAANNNNTTC	2 cut(s)	221, 880
PfeI	GAWTC	4 cut(s)	709, 773, 908, 1121
PkrI	GCNGC	5 cut(s)	158, 580, 613, 1129, 1159
PleI	GAGTC	4 cut(s)	620, 734, 940, 1099
PmaCI	CACGTG	1 cut(s)	563
PmlI	CACGTG	1 cut(s)	563
PpsI	GAGTC	4 cut(s)	620, 734, 940, 1099
Ppu21I	YACGTR	1 cut(s)	563
PpuMI	RGGWCCY	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	573
PspCI	CACGTG	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	6 cut(s)	107, 528, 593, 647, 814, 993
PspPI	GGNCC	3 cut(s)	77, 105, 244
PspPPI	RGGWCCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	2 cut(s)	375, 963
SatI	GCNGC	5 cut(s)	157, 579, 612, 1128, 1158
Sau3AI	GATC	3 cut(s)	466, 1018, 1111
Sau96I	GGNCC	3 cut(s)	77, 105, 244
SchI	GAGTC	4 cut(s)	620, 734, 941, 1100
ScrFI	CCNGG	2 cut(s)	575, 1104
SfaNI	GCATC	4 cut(s)	311, 592, 1054, 1131
SfcI	CTRYAG	2 cut(s)	828, 855
SinI	GGWCC	3 cut(s)	77, 105, 244
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	4 cut(s)	372, 621, 982, 1274
SsiI	CCGC	5 cut(s)	75, 459, 649, 1127, 1160
SspMI	CTAG	3 cut(s)	251, 531, 552
StyD4I	CCNGG	2 cut(s)	573, 1102
TaaI	ACNGT	4 cut(s)	84, 398, 829, 859
TaiI	ACGT	7 cut(s)	14, 237, 270, 565, 763, 905, 924
TaqI	TCGA	7 cut(s)	22, 71, 405, 411, 504, 707, 1114
TasI	AATT	4 cut(s)	372, 621, 982, 1274
TatI	WGTACW	1 cut(s)	398
TauI	GCSGC	1 cut(s)	1130
TfiI	GAWTC	4 cut(s)	709, 773, 908, 1121
Tru1I	TTAA	2 cut(s)	375, 963
Tru9I	TTAA	2 cut(s)	375, 963
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	227, 1033
TseI	GCWGC	4 cut(s)	156, 578, 611, 1157
Tsp45I	GTSAC	2 cut(s)	227, 1033
TspDTI	ATGAA	6 cut(s)	807, 813, 861, 900, 1185, 1212
TspGWI	ACGGA	1 cut(s)	1229
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	3 cut(s)	77, 105, 244
XapI	RAATTY	1 cut(s)	982
XbaI	TCTAGA	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1273
XmiI	GTMKAC	1 cut(s)	1231
XmnI	GAANNNNTTC	2 cut(s)	221, 880
XspI	CTAG	3 cut(s)	251, 531, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.