Rw3G018300

Tumour suppressing sub-chromosomal transferable candidate 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006057
Physical Location & Seq
Reverse (-)
20308943 .. 20309974
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018300.1

Sequence Viewer

Length: 990 bp
ATGCAAGGCAGTTTCAGCTTCCGAGTAGGCAAGACCTTCGGCTCTCTACCTGGTTCATGGTCCCTTGGAGATGAGAAAATCGATAGAAGGGAATGTAACAGGAACAATGAGAGCCCTGAACCGGAATCCGAGCTCCACCAATACCACACATACTCAACGGATGACTTCTGTAACGAGCTGGAGAATGGCCTCCTAGAATTTTTTGACGACAAGTTCTTAGTACAGGAAGAAGAACGTGGTTGGTTCGGTCAATCTTTCGAGTCTAAAGCCAACGCTAAGACTAAGCCAGATGATTATGAAGAGGAGCAGTGGGAAATTAAAACCTCTATTGGCTTAGACCTCACACTCGACTCCGAGGACGAGGAAGATGGATACGATAAATTGGCTTACGTAAACGACGACGATGAGACAGACAGTGATGAGGTTCCCAATTTGCTCAAGGGTTTCTCTGGAGACCCACTTGAAATTGGCATAAAATCGCTTTTGAAGAGGACGAGTATTGATGATCAATTAGTCACATCTACAGTAGAAAAACGTGTTCGATTTCGAGACGAAGAGGAGCATGAAGGATCGAAAGATCGTTGGTCTGCAGCAGTTCCAGATTACATACGGAATCCATCAAGATATACACATTATATGTTTGATTCATCTAGTGACATGGATGACAAATCTAACGAGCAAGCCTATTTGAACTTCCGTATGCAATTTTCGAGATTGATGAAGTCAGATACTATGGAAGCCGAGGAAGTTGCTTGTATTGCAGTTTCTAAACCAGTCGCATTGGTACCAAGAAAGAAATCAACTGATGCTAGTAAGGAACTTGCGCCTTGCAGAATCATTGCGCCTTGCAGAATCAGGCCAATTGCTTTTCCAGACACTGATGATTGTGAGATGGAGGAAGATGAACCGGTGACAGGATCAAGCAGTGGACCGGAAGAGCCGGCGTGCGGAGAACTATCCCCCGCCAGTTTCGTACAAACACCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

329

Amino Acids

37.34

Weight (kDa)

4.37

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 194 - 242 8e-07 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 784
AccB1I GGYRCC 1 cut(s) 784
AciI CCGC 2 cut(s) 948, 963
AclWI GGATC 2 cut(s) 577, 925
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 3 cut(s) 222, 786, 975
AfiI CCNNNNNNNGG 3 cut(s) 121, 914, 947
AflIII ACRYGT 1 cut(s) 535
AgeI ACCGGT 1 cut(s) 907
AgsI TTSAA 3 cut(s) 464, 487, 691
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 18, 133, 178, 986
AluI AGCT 4 cut(s) 18, 133, 178, 986
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 3 cut(s) 401, 447, 543
AlwI GGATC 2 cut(s) 577, 925
AlwNI CAGNNNCTG 1 cut(s) 878
AoxI GGCC 2 cut(s) 187, 857
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 1 cut(s) 197
AsiGI ACCGGT 1 cut(s) 907
Asp718I GGTACC 1 cut(s) 784
AspLEI GCGC 2 cut(s) 826, 844
AspS9I GGNCC 2 cut(s) 60, 929
AsuHPI GGTGA 1 cut(s) 922
AvaII GGWCC 2 cut(s) 60, 929
BanI GGYRCC 1 cut(s) 784
BanII GRGCYC 2 cut(s) 116, 135
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 602
BccI CCATC 3 cut(s) 362, 625, 886
BcgI CGANNNNNNTGC 4 cut(s) 19, 53, 731, 765
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 3 cut(s) 401, 447, 543
BfaI CTAG 3 cut(s) 194, 651, 810
BfmI CTRYAG 2 cut(s) 522, 588
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 1 cut(s) 591
BlsI GCNGC 1 cut(s) 592
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 60, 929
BmgT120I GGNCC 2 cut(s) 60, 929
BmiI GGNNCC 3 cut(s) 62, 426, 786
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 796
BpmI CTGGAG 2 cut(s) 200, 471
BpuEI CTTGAG 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 391
BsaI GGTCTC 1 cut(s) 447
BsaJI CCNNGG 3 cut(s) 64, 354, 741
BsaWI WCCGGW 3 cut(s) 121, 907, 931
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 914, 947
Bse118I RCCGGY 2 cut(s) 907, 940
Bse1I ACTGG 2 cut(s) 773, 966
Bse3DI GCAATG 1 cut(s) 837
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 64, 354, 741
BseGI GGATG 2 cut(s) 166, 667
BseLI CCNNNNNNNGG 3 cut(s) 121, 914, 947
BseMI GCAATG 1 cut(s) 837
BseNI ACTGG 2 cut(s) 773, 966
BseRI GAGGAG 2 cut(s) 317, 572
BseXI GCAGC 1 cut(s) 602
BshFI GGCC 2 cut(s) 189, 859
BshNI GGYRCC 1 cut(s) 784
BshTI ACCGGT 1 cut(s) 907
BshVI ATCGAT 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 4 cut(s) 122, 908, 932, 941
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 121, 914, 947
BsmAI GTCTC 3 cut(s) 401, 447, 543
BsmBI CGTCTC 1 cut(s) 543
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 2 cut(s) 189, 859
Bso31I GGTCTC 1 cut(s) 447
Bsp1286I GDGCHC 2 cut(s) 116, 135
Bsp143I GATC 4 cut(s) 505, 569, 577, 917
BspACI CCGC 2 cut(s) 948, 963
BspANI GGCC 2 cut(s) 189, 859
BspDI ATCGAT 1 cut(s) 81
BspLI GGNNCC 3 cut(s) 62, 426, 786
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 2 cut(s) 577, 925
BspQI GCTCTTC 1 cut(s) 930
BspT107I GGYRCC 1 cut(s) 784
BspTNI GGTCTC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 837
BsrFI RCCGGY 2 cut(s) 907, 940
BsrI ACTGG 2 cut(s) 773, 966
BssAI RCCGGY 2 cut(s) 907, 940
BssECI CCNNGG 3 cut(s) 64, 354, 741
BssMI GATC 4 cut(s) 505, 569, 577, 917
BssT1I CCWWGG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 416, 526
Bst6I CTCTTC 4 cut(s) 294, 482, 549, 930
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 3 cut(s) 681, 942, 946
BstDEI CTNAG 5 cut(s) 217, 276, 282, 334, 987
BstF5I GGATG 2 cut(s) 166, 667
BstHHI GCGC 2 cut(s) 826, 844
BstKTI GATC 4 cut(s) 508, 572, 580, 920
BstMAI GTCTC 3 cut(s) 401, 447, 543
BstMBI GATC 4 cut(s) 505, 569, 577, 917
BstMWI GCNNNNNNNGC 2 cut(s) 15, 758
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 2 cut(s) 522, 588
BstSNI TACGTA 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 602
Bsu15I ATCGAT 1 cut(s) 81
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 2 cut(s) 189, 859
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 2 cut(s) 166, 667
BtsI GCAGTG 2 cut(s) 314, 931
BtsIMutI CAGTG 4 cut(s) 314, 421, 876, 931
Cac8I GCNNGC 3 cut(s) 681, 942, 946
CaiI CAGNNNCTG 1 cut(s) 878
CfoI GCGC 2 cut(s) 826, 844
Cfr10I RCCGGY 2 cut(s) 907, 940
Cfr13I GGNCC 2 cut(s) 60, 929
ClaI ATCGAT 1 cut(s) 81
CsiI ACCWGGT 1 cut(s) 49
Csp6I GTAC 3 cut(s) 221, 785, 974
CspAI ACCGGT 1 cut(s) 907
CviAII CATG 3 cut(s) 57, 563, 658
CviQI GTAC 3 cut(s) 221, 785, 974
DdeI CTNAG 5 cut(s) 217, 276, 282, 334, 987
DpnI GATC 4 cut(s) 507, 571, 579, 919
DpnII GATC 4 cut(s) 505, 569, 577, 917
Eam1104I CTCTTC 4 cut(s) 294, 482, 549, 930
EarI CTCTTC 4 cut(s) 294, 482, 549, 930
Ecl136II GAGCTC 1 cut(s) 133
Eco105I TACGTA 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 116, 135
Eco31I GGTCTC 1 cut(s) 447
Eco47I GGWCC 2 cut(s) 60, 929
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 64
EcoT38I GRGCYC 2 cut(s) 116, 135
ErhI CCWWGG 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 543
FaeI CATG 3 cut(s) 60, 566, 661
FaqI GGGAC 1 cut(s) 46
FatI CATG 3 cut(s) 56, 562, 657
FauI CCCGC 1 cut(s) 970
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 1 cut(s) 591
FokI GGATG 2 cut(s) 173, 674
FriOI GRGCYC 2 cut(s) 116, 135
Fsp4HI GCNGC 1 cut(s) 591
FspBI CTAG 3 cut(s) 194, 651, 810
GlaI GCGC 2 cut(s) 825, 843
GluI GCNGC 1 cut(s) 591
GsuI CTGGAG 2 cut(s) 200, 471
HaeIII GGCC 2 cut(s) 189, 859
HapII CCGG 4 cut(s) 122, 908, 932, 941
HhaI GCGC 2 cut(s) 826, 844
Hin1II CATG 3 cut(s) 60, 566, 661
Hin6I GCGC 2 cut(s) 824, 842
HinP1I GCGC 2 cut(s) 824, 842
HinfI GANTC 7 cut(s) 125, 260, 350, 613, 644, 834, 852
HpaII CCGG 4 cut(s) 122, 908, 932, 941
HphI GGTGA 1 cut(s) 922
Hpy166II GTNNAC 2 cut(s) 394, 929
Hpy188I TCNGA 4 cut(s) 23, 130, 355, 727
Hpy188III TCNNGA 6 cut(s) 450, 548, 599, 621, 711, 872
Hpy8I GTNNAC 2 cut(s) 394, 929
Hpy99I CGWCG 2 cut(s) 401, 404
HpyAV CCTTC 3 cut(s) 46, 81, 560
HpyCH4III ACNGT 2 cut(s) 416, 526
HpyCH4IV ACGT 3 cut(s) 235, 390, 535
HpyCH4V TGCA 6 cut(s) 4, 590, 703, 761, 831, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 758
HpyF3I CTNAG 5 cut(s) 217, 276, 282, 334, 987
HpySE526I ACGT 3 cut(s) 235, 390, 535
Hsp92II CATG 3 cut(s) 60, 566, 661
HspAI GCGC 2 cut(s) 824, 842
KpnI GGTACC 1 cut(s) 788
KroI GCCGGC 1 cut(s) 940
KroNI GCCGGC 1 cut(s) 942
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 4 cut(s) 505, 569, 577, 917
LguI GCTCTTC 1 cut(s) 930
LmnI GCTCC 3 cut(s) 138, 304, 559
Lsp1109I GCAGC 1 cut(s) 602
LweI GCATC 1 cut(s) 796
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 3 cut(s) 194, 651, 810
MaeII ACGT 3 cut(s) 235, 390, 535
MaeIII GTNAC 5 cut(s) 95, 170, 514, 653, 910
MalI GATC 4 cut(s) 507, 571, 579, 919
MboI GATC 4 cut(s) 505, 569, 577, 917
MboII GAAGA 8 cut(s) 239, 242, 311, 377, 499, 566, 911, 947
MfeI CAATTG 1 cut(s) 861
MhlI GDGCHC 2 cut(s) 116, 135
MluCI AATT 8 cut(s) 197, 315, 380, 430, 465, 509, 704, 861
MlyI GAGTC 2 cut(s) 269, 344
MroNI GCCGGC 1 cut(s) 940
MseI TTAA 1 cut(s) 318
MspI CCGG 4 cut(s) 122, 908, 932, 941
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 861
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 15, 758
NaeI GCCGGC 1 cut(s) 942
NdeII GATC 4 cut(s) 505, 569, 577, 917
NgoMIV GCCGGC 1 cut(s) 940
NlaIII CATG 3 cut(s) 60, 566, 661
NlaIV GGNNCC 3 cut(s) 62, 426, 786
NmeAIII GCCGAG 1 cut(s) 766
NmuCI GTSAC 3 cut(s) 514, 653, 910
PciSI GCTCTTC 1 cut(s) 930
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PdiI GCCGGC 1 cut(s) 942
PfeI GAWTC 5 cut(s) 125, 613, 644, 834, 852
PinAI ACCGGT 1 cut(s) 907
PkrI GCNGC 1 cut(s) 592
PleI GAGTC 2 cut(s) 268, 344
PpsI GAGTC 2 cut(s) 268, 344
Ppu21I YACGTR 1 cut(s) 391
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 3 cut(s) 62, 426, 786
PspPI GGNCC 2 cut(s) 60, 929
PstI CTGCAG 1 cut(s) 592
PstNI CAGNNNCTG 1 cut(s) 878
RsaI GTAC 3 cut(s) 222, 786, 975
RsaNI GTAC 3 cut(s) 221, 785, 974
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 930
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 591
Sau3AI GATC 4 cut(s) 505, 569, 577, 917
Sau96I GGNCC 2 cut(s) 60, 929
SchI GAGTC 2 cut(s) 269, 344
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 2 cut(s) 116, 135
SexAI ACCWGGT 1 cut(s) 49
SfaNI GCATC 1 cut(s) 796
SfcI CTRYAG 2 cut(s) 522, 588
SinI GGWCC 2 cut(s) 60, 929
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SnaBI TACGTA 1 cut(s) 391
Sse9I AATT 8 cut(s) 197, 315, 380, 430, 465, 509, 704, 861
SsiI CCGC 2 cut(s) 948, 963
SspMI CTAG 3 cut(s) 194, 651, 810
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 416, 526
TaiI ACGT 3 cut(s) 238, 393, 538
TaqI TCGA 7 cut(s) 81, 258, 348, 541, 547, 572, 710
TaqII GACCGA 1 cut(s) 236
TasI AATT 8 cut(s) 197, 315, 380, 430, 465, 509, 704, 861
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 5 cut(s) 125, 613, 644, 834, 852
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 4 cut(s) 314, 421, 883, 931
TseFI GTSAC 3 cut(s) 514, 653, 910
TseI GCWGC 1 cut(s) 590
Tsp45I GTSAC 3 cut(s) 514, 653, 910
TspDTI ATGAA 6 cut(s) 45, 312, 579, 636, 734, 918
TspGWI ACGGA 3 cut(s) 173, 625, 686
TspRI CASTG 4 cut(s) 314, 421, 883, 931
VpaK11BI GGWCC 2 cut(s) 60, 929
XapI RAATTY 1 cut(s) 197
XspI CTAG 3 cut(s) 194, 651, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.