Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006057

Physical Location & Seq

Genomic Coordinates Reverse (-)

13833122 .. 13834263

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCAAGACAGTTTCAGCGTCCGAGTAGGCAAGACCTTCGACTCTCTACCTGGTTCTTGGTCCCTTGGAGATGAGCAAATCGACAGGCGGGAATGTAACAGGGACAAGGACAGCCCTGTACCAGAATCCGAGCTCCACAAAAACAACACAAATTCTACGGATGACTTCGGTAACGAACTGGAGAATGAGAGCCTCTACGACTTTTTTGATGACGAGTATTTAGTAGAGGAAGAAGAGCTACATGGTTCCAACGGTCAATCTGCTGAGTCTAAAGCTAACCCTAAGACTAAGCCAGATGATTACGATGAGGAGCAGTGGGATATTAAAACCTCTATTGGCTTAGACCTCACACTCGACTACGAGGACGAGGAAGATGGATATGACAGATTTGCTGTTGGAATTGAAGACTTTGTAGGTCACTCTGATATGAATAAGTACGTAAACGACGACGATGAGATAGACAATGATGAGGTCCCCAATCTGCTCAAGGGTTTCATTGGAGACACCCTTGAAAATGGCATAAAGACGCTTTTGAAGAGGATGAGCATTGATGATCATTTAGTCTCATCTACAAGAGCAAAACGTGTTCGATTCGCAACGAAGAGGAGCATGAAGGATCAGAAGATCGGTGGTCAGCAGCAGTTCCGGATTACATGCGTACGTAATCCATCAAGATACACACATTATACGTTTGATTCCTCTGATGACATGGATGACAAATCTAACAACCAAGCCTATTTGAACTTGCGGATGCAACTTTTGAGATTGATGAAGTCAGATACTGTAGAGGGATTAGAAGCCAAGGATGATGCTTATATTGGTGTTCCAAATCCAGTCGCATCGGTACCAATAAGAAAGAAATCAACTGATGCTAGTAAGATTGCGCCTGGCATAATCAGGCCAACTGCTTTTCCAGACGTTGATGATTGTGAGATGGGCCAAGATGAACAGGCGACCGGAACAAGCAGTGAAAGAGCCGGCGTACGGAGAACTAGCCGCCGCCAGTTTCGTAAAAGCATCAGCTTAGAGTTGGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

347

Amino Acids

39.32

Weight (kDa)

4.55

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13970
fragaria_vesca	FvH4_6g20211 FvH4_6g54290
malus_domestica	MD09G1002700.v1.1 MD17G1006900.v1.1
prunus_persica	Prupe.3G313500_v2.0.a1
pyrus_communis	pycom111g00220 pycom17g00250
rosa_chinensis	RchiOBHm_Chr2g0176501 RchiOBHm_Chr3g0475791
rosa_laevigata	RLG00000022418 RLG00000023817
rosa_multiflora	Rmu_sc0000539.1_g000083 Rmu_sc0011904.1_g000011
rosa_roxburghii	Rroxscaffold_2G00076360 Rroxscaffold_6G00405880
rosa_rugosa	Rorug02G0595200 Rorug02G0595300 Rorug03G0151700
rosa_samantha	Rh2AG673500 Rh2CG647500 Rh2DG698400 Rh3AG201200 Rh3CG226300 Rh3DG226800
rosa_wichuraiana	Rw2G055240 Rw3G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	844
AccB1I	GGYRCC	1 cut(s)	844
AccIII	TCCGGA	1 cut(s)	645
AciI	CCGC	4 cut(s)	88, 748, 997, 1000
AclWI	GGATC	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	151
AfaI	GTAC	5 cut(s)	120, 437, 660, 846, 984
AfiI	CCNNNNNNNGG	1 cut(s)	984
AflIII	ACRYGT	1 cut(s)	583
AgsI	TTSAA	4 cut(s)	404, 512, 535, 742
AjnI	CCWGG	2 cut(s)	49, 886
AluBI	AGCT	4 cut(s)	133, 238, 275, 1023
AluI	AGCT	4 cut(s)	133, 238, 275, 1023
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	495, 568
AlwI	GGATC	1 cut(s)	624
AlwNI	CAGNNNCTG	1 cut(s)	782
Aor13HI	TCCGGA	1 cut(s)	645
AoxI	GGCC	2 cut(s)	899, 937
ApeKI	GCWGC	1 cut(s)	637
ApoI	RAATTY	1 cut(s)	151
Asp718I	GGTACC	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	886
AspS9I	GGNCC	3 cut(s)	60, 472, 937
AvaII	GGWCC	2 cut(s)	60, 472
BanI	GGYRCC	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	135
BarI	GAAGNNNNNNTAC	2 cut(s)	222, 254
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	649
BccI	CCATC	3 cut(s)	368, 676, 928
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	2 cut(s)	51, 888
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	495, 568
BfaI	CTAG	2 cut(s)	873, 993
BfmI	CTRYAG	1 cut(s)	783
BisI	GCNGC	3 cut(s)	638, 997, 1000
BlsI	GCNGC	3 cut(s)	639, 998, 1001
Bme1390I	CCNGG	2 cut(s)	51, 888
Bme18I	GGWCC	2 cut(s)	60, 472
BmgT120I	GGNCC	3 cut(s)	60, 472, 937
BmiI	GGNNCC	4 cut(s)	62, 247, 474, 846
BmrFI	CCNGG	2 cut(s)	51, 888
BmsI	GCATC	5 cut(s)	741, 799, 848, 859, 1026
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	470
BsaAI	YACGTR	2 cut(s)	439, 662
BsaJI	CCNNGG	2 cut(s)	64, 801
BsaWI	WCCGGW	2 cut(s)	645, 956
Bsc4I	CCNNNNNNNGG	1 cut(s)	984
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	3 cut(s)	183, 833, 1003
BseAI	TCCGGA	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	51, 888
BseDI	CCNNGG	2 cut(s)	64, 801
BseGI	GGATG	6 cut(s)	166, 546, 718, 756, 811, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	984
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	3 cut(s)	183, 833, 1003
BseRI	GAGGAG	2 cut(s)	323, 619
BseXI	GCAGC	1 cut(s)	649
Bsh1285I	CGRYCG	1 cut(s)	957
BshFI	GGCC	2 cut(s)	901, 939
BshNI	GGYRCC	1 cut(s)	844
BsiEI	CGRYCG	1 cut(s)	957
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	646, 957, 978
BsiWI	CGTACG	2 cut(s)	658, 982
BslFI	GGGAC	3 cut(s)	46, 116, 458
BslI	CCNNNNNNNGG	1 cut(s)	984
BsmAI	GTCTC	2 cut(s)	495, 568
BsmFI	GGGAC	3 cut(s)	46, 116, 458
BsnI	GGCC	2 cut(s)	901, 939
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp13I	TCCGGA	1 cut(s)	645
Bsp143I	GATC	3 cut(s)	553, 616, 624
BspACI	CCGC	4 cut(s)	88, 748, 997, 1000
BspANI	GGCC	2 cut(s)	901, 939
BspCNI	CTCAG	1 cut(s)	256
BspEI	TCCGGA	1 cut(s)	645
BspLI	GGNNCC	4 cut(s)	62, 247, 474, 846
BspPI	GGATC	1 cut(s)	624
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	844
BsrFI	RCCGGY	1 cut(s)	977
BsrI	ACTGG	3 cut(s)	183, 833, 1003
BssAI	RCCGGY	1 cut(s)	977
BssECI	CCNNGG	2 cut(s)	64, 801
BssMI	GATC	3 cut(s)	553, 616, 624
BssT1I	CCWWGG	2 cut(s)	64, 801
Bst2UI	CCWGG	2 cut(s)	51, 888
Bst4CI	ACNGT	3 cut(s)	11, 254, 784
Bst6I	CTCTTC	3 cut(s)	228, 530, 596
BstBAI	YACGTR	2 cut(s)	439, 662
BstC8I	GCNNGC	1 cut(s)	979
BstDEI	CTNAG	5 cut(s)	264, 282, 288, 340, 1024
BstF5I	GGATG	6 cut(s)	166, 546, 718, 756, 811, 1039
BstHHI	GCGC	1 cut(s)	886
BstKTI	GATC	3 cut(s)	556, 619, 627
BstMAI	GTCTC	2 cut(s)	495, 568
BstMBI	GATC	3 cut(s)	553, 616, 624
BstMCI	CGRYCG	1 cut(s)	957
BstNI	CCWGG	2 cut(s)	51, 888
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	49, 886
BstSFI	CTRYAG	1 cut(s)	783
BstSNI	TACGTA	2 cut(s)	439, 662
BstV1I	GCAGC	1 cut(s)	649
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	901, 939
BtsCI	GGATG	6 cut(s)	166, 546, 718, 756, 811, 1039
BtsI	GCAGTG	2 cut(s)	320, 973
BtsIMutI	CAGTG	2 cut(s)	320, 973
Cac8I	GCNNGC	1 cut(s)	979
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	1 cut(s)	886
Cfr10I	RCCGGY	1 cut(s)	977
Cfr13I	GGNCC	3 cut(s)	60, 472, 937
CseI	GACGC	2 cut(s)	7, 535
CsiI	ACCWGGT	1 cut(s)	49
Csp6I	GTAC	5 cut(s)	119, 436, 659, 845, 983
CviAII	CATG	4 cut(s)	242, 610, 654, 709
CviQI	GTAC	5 cut(s)	119, 436, 659, 845, 983
DdeI	CTNAG	5 cut(s)	264, 282, 288, 340, 1024
DpnI	GATC	3 cut(s)	555, 618, 626
DpnII	GATC	3 cut(s)	553, 616, 624
Eam1104I	CTCTTC	3 cut(s)	228, 530, 596
EarI	CTCTTC	3 cut(s)	228, 530, 596
Ecl136II	GAGCTC	1 cut(s)	133
Eco105I	TACGTA	2 cut(s)	439, 662
Eco130I	CCWWGG	2 cut(s)	64, 801
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	60, 472
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	49, 886
EcoT14I	CCWWGG	2 cut(s)	64, 801
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	2 cut(s)	64, 801
FaeI	CATG	4 cut(s)	245, 613, 657, 712
FaqI	GGGAC	3 cut(s)	46, 116, 458
FatI	CATG	4 cut(s)	241, 609, 653, 708
FauI	CCCGC	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	638, 997, 1000
FokI	GGATG	5 cut(s)	173, 553, 725, 763, 818
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	638, 997, 1000
FspBI	CTAG	2 cut(s)	873, 993
GlaI	GCGC	1 cut(s)	885
GluI	GCNGC	3 cut(s)	638, 997, 1000
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	901, 939
HapII	CCGG	3 cut(s)	646, 957, 978
HgaI	GACGC	2 cut(s)	7, 535
HhaI	GCGC	1 cut(s)	886
Hin1II	CATG	4 cut(s)	245, 613, 657, 712
Hin6I	GCGC	1 cut(s)	884
HinP1I	GCGC	1 cut(s)	884
HinfI	GANTC	5 cut(s)	41, 125, 266, 591, 695
HpaII	CCGG	3 cut(s)	646, 957, 978
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	6 cut(s)	23, 130, 424, 621, 703, 778
Hpy188III	TCNNGA	3 cut(s)	646, 672, 914
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	2 cut(s)	449, 452
HpyAV	CCTTC	2 cut(s)	46, 607
HpyCH4III	ACNGT	3 cut(s)	11, 254, 784
HpyCH4IV	ACGT	5 cut(s)	438, 583, 661, 689, 918
HpyCH4V	TGCA	2 cut(s)	4, 754
HpyF3I	CTNAG	5 cut(s)	264, 282, 288, 340, 1024
HpySE526I	ACGT	5 cut(s)	438, 583, 661, 689, 918
Hsp92II	CATG	4 cut(s)	245, 613, 657, 712
HspAI	GCGC	1 cut(s)	884
Kpn2I	TCCGGA	1 cut(s)	645
KpnI	GGTACC	1 cut(s)	848
KroI	GCCGGC	1 cut(s)	977
KroNI	GCCGGC	1 cut(s)	979
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	553, 616, 624
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	3 cut(s)	138, 310, 606
Lsp1109I	GCAGC	1 cut(s)	649
LweI	GCATC	5 cut(s)	741, 799, 848, 859, 1026
MabI	ACCWGGT	1 cut(s)	49
MaeI	CTAG	2 cut(s)	873, 993
MaeII	ACGT	5 cut(s)	438, 583, 661, 689, 918
MaeIII	GTNAC	3 cut(s)	95, 170, 416
MalI	GATC	3 cut(s)	555, 618, 626
MboI	GATC	3 cut(s)	553, 616, 624
MboII	GAAGA	7 cut(s)	242, 245, 383, 416, 547, 613, 634
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	151, 399
MlyI	GAGTC	2 cut(s)	35, 275
MmeI	TCCRAC	3 cut(s)	273, 376, 1011
MroI	TCCGGA	1 cut(s)	645
MroNI	GCCGGC	1 cut(s)	977
MseI	TTAA	1 cut(s)	324
MspI	CCGG	3 cut(s)	646, 957, 978
MspR9I	CCNGG	2 cut(s)	51, 888
MvaI	CCWGG	2 cut(s)	51, 888
NaeI	GCCGGC	1 cut(s)	979
NdeII	GATC	3 cut(s)	553, 616, 624
NgoMIV	GCCGGC	1 cut(s)	977
NlaIII	CATG	4 cut(s)	245, 613, 657, 712
NlaIV	GGNNCC	4 cut(s)	62, 247, 474, 846
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	657
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PdiI	GCCGGC	1 cut(s)	979
PfeI	GAWTC	3 cut(s)	125, 591, 695
Pfl23II	CGTACG	2 cut(s)	658, 982
PkrI	GCNGC	3 cut(s)	639, 998, 1001
PleI	GAGTC	2 cut(s)	35, 274
PpsI	GAGTC	2 cut(s)	35, 274
Ppu21I	YACGTR	2 cut(s)	439, 662
PpuMI	RGGWCCY	1 cut(s)	472
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	2 cut(s)	49, 886
PspGI	CCWGG	2 cut(s)	49, 886
PspLI	CGTACG	2 cut(s)	658, 982
PspN4I	GGNNCC	4 cut(s)	62, 247, 474, 846
PspPI	GGNCC	3 cut(s)	60, 472, 937
PspPPI	RGGWCCY	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	782
RsaI	GTAC	5 cut(s)	120, 437, 660, 846, 984
RsaNI	GTAC	5 cut(s)	119, 436, 659, 845, 983
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	3 cut(s)	638, 997, 1000
Sau3AI	GATC	3 cut(s)	553, 616, 624
Sau96I	GGNCC	3 cut(s)	60, 472, 937
SchI	GAGTC	2 cut(s)	35, 275
ScrFI	CCNGG	2 cut(s)	51, 888
SduI	GDGCHC	1 cut(s)	135
SexAI	ACCWGGT	1 cut(s)	49
SfaNI	GCATC	5 cut(s)	741, 799, 848, 859, 1026
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	2 cut(s)	60, 472
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SnaBI	TACGTA	2 cut(s)	439, 662
Sse9I	AATT	2 cut(s)	151, 399
SsiI	CCGC	4 cut(s)	88, 748, 997, 1000
SspMI	CTAG	2 cut(s)	873, 993
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	49, 886
StyI	CCWWGG	2 cut(s)	64, 801
TaaI	ACNGT	3 cut(s)	11, 254, 784
TaiI	ACGT	5 cut(s)	441, 586, 664, 692, 921
TaqI	TCGA	4 cut(s)	39, 81, 354, 589
TasI	AATT	2 cut(s)	151, 399
TauI	GCSGC	2 cut(s)	999, 1002
TfiI	GAWTC	3 cut(s)	125, 591, 695
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	320, 973
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	637
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	5 cut(s)	443, 484, 626, 785, 960
TspGWI	ACGGA	2 cut(s)	173, 1000
TspRI	CASTG	2 cut(s)	320, 973
VpaK11BI	GGWCC	2 cut(s)	60, 472
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	657
XspI	CTAG	2 cut(s)	873, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.