Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006057

Physical Location & Seq

Genomic Coordinates Forward (+)

91396589 .. 91398329

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG698400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAAGAGAGTTTCAGCGTTCGAGTAAGCAAAACGTTCGATATTCTAGATGGCTCATCACCATCAGCGACAGCGACTGCTCCGTCTTCGTCGCTGTGGTCCCTAACAGGTGAGGAAATCGAGAAGAGAGAATGGAACAGGGACAAGGGGAGCCCCGAACCCCAACCCCGACCCTGCAACCCAGATTCAAATTCAAAGGACGATTTCTTCGGTAACGAGCTGGAGAAGGACCTTCTGGACCTTGACGACGACGACGACGTGGAAGAAGAAGAAGAAGAAGACGAGGTGGTGGAGGAGCAATCTGCTAAGCCTAAGCCGAAGCCGAAGCCTATGCCGGATGATTATAACGAGGAGCAGTGGCAAATTAAAACCTGCATTGGCTTGGACTGTACTCTCGACCACGAGGAAGAGGAAGATGAATTTGACAAAGTGGCTGTTGGCAAGGGAAATGCTGCAGACCGCTTTTATATGAAGGATGTAAATGACTATCCGATAGACATTGATTCTCAATACGAGGTTCCCAATTCATTGAACGATTTCACTAGAGACCCTCGCGCCAATCACCTAGCAGCTAAGATTAGACTCCAACTGGATGCAGAAGCAGCTCGAAAAATTGACTCCTTGCGCGTCTCTGGGAACACTGCACCATCCGGTTTAGGTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

222

Amino Acids

25.02

Weight (kDa)

4.21

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13970
fragaria_vesca	FvH4_6g20211 FvH4_6g54290
malus_domestica	MD09G1002700.v1.1 MD17G1006900.v1.1
prunus_persica	Prupe.3G313500_v2.0.a1
pyrus_communis	pycom111g00220 pycom17g00250
rosa_chinensis	RchiOBHm_Chr2g0176501 RchiOBHm_Chr3g0475791
rosa_laevigata	RLG00000022418 RLG00000023817
rosa_multiflora	Rmu_sc0000539.1_g000083 Rmu_sc0011904.1_g000011
rosa_roxburghii	Rroxscaffold_2G00076360 Rroxscaffold_6G00405880
rosa_rugosa	Rorug02G0595200 Rorug02G0595300 Rorug03G0151700
rosa_samantha	Rh2AG673500 Rh2CG647500 Rh2DG698400 Rh3AG201200 Rh3CG226300 Rh3DG226800
rosa_wichuraiana	Rw2G055240 Rw3G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AasI	GACNNNNNNGTC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	380
AccII	CGCG	2 cut(s)	555, 627
AciI	CCGC	1 cut(s)	460
AclI	AACGTT	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	190, 419
AfaI	GTAC	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	189, 195, 532, 665
AjiI	CACGTC	1 cut(s)	259
AluBI	AGCT	3 cut(s)	220, 572, 605
AluI	AGCT	3 cut(s)	220, 572, 605
Alw26I	GTCTC	2 cut(s)	540, 634
AlwNI	CAGNNNCTG	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	452, 569, 602
ApoI	RAATTY	2 cut(s)	190, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	1 cut(s)	536
AspLEI	GCGC	2 cut(s)	557, 627
AspS9I	GGNCC	3 cut(s)	99, 229, 238
AsuHPI	GGTGA	3 cut(s)	51, 122, 554
AvaII	GGWCC	3 cut(s)	99, 229, 238
BanII	GRGCYC	1 cut(s)	155
BauI	CACGAG	1 cut(s)	401
BbsI	GAAGAC	2 cut(s)	78, 285
BbvI	GCAGC	3 cut(s)	439, 581, 614
BccI	CCATC	3 cut(s)	44, 70, 655
BcgI	CGANNNNNNTGC	4 cut(s)	19, 53, 313, 347
BcoDI	GTCTC	2 cut(s)	540, 634
BfaI	CTAG	3 cut(s)	47, 543, 566
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	380
BisI	GCNGC	3 cut(s)	453, 570, 603
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	454, 571, 604
Bme18I	GGWCC	3 cut(s)	99, 229, 238
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	3 cut(s)	99, 229, 238
BmiI	GGNNCC	3 cut(s)	101, 152, 519
BmsI	GCATC	1 cut(s)	583
BpiI	GAAGAC	2 cut(s)	78, 285
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	540
BsaWI	WCCGGW	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	594
BseGI	GGATG	4 cut(s)	343, 481, 598, 647
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	2 cut(s)	308, 365
BseXI	GCAGC	3 cut(s)	439, 581, 614
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	2 cut(s)	555, 627
BsiSI	CCGG	2 cut(s)	335, 651
BslFI	GGGAC	2 cut(s)	85, 155
BsmAI	GTCTC	2 cut(s)	540, 634
BsmBI	CGTCTC	1 cut(s)	634
BsmFI	GGGAC	2 cut(s)	85, 155
Bso31I	GGTCTC	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	460
BspFNI	CGCG	2 cut(s)	555, 627
BspLI	GGNNCC	3 cut(s)	101, 152, 519
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	594
BssSI	CACGAG	1 cut(s)	401
Bst2BI	CACGAG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	2 cut(s)	119, 402
BstDEI	CTNAG	3 cut(s)	306, 312, 573
BstF5I	GGATG	4 cut(s)	343, 481, 598, 647
BstFNI	CGCG	2 cut(s)	555, 627
BstHHI	GCGC	2 cut(s)	557, 627
BstMAI	GTCTC	2 cut(s)	540, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	2 cut(s)	555, 627
BstV1I	GCAGC	3 cut(s)	439, 581, 614
BstV2I	GAAGAC	2 cut(s)	78, 285
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	4 cut(s)	343, 481, 598, 647
BtsI	GCAGTG	2 cut(s)	362, 639
BtsIMutI	CAGTG	2 cut(s)	362, 639
BveI	ACCTGC	1 cut(s)	380
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	2 cut(s)	557, 627
Cfr13I	GGNCC	3 cut(s)	99, 229, 238
CseI	GACGC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	390
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	3 cut(s)	306, 312, 573
DrdI	GACNNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	119, 402
EarI	CTCTTC	2 cut(s)	119, 402
Eco24I	GRGCYC	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	540
Eco47I	GGWCC	3 cut(s)	99, 229, 238
EcoO109I	RGGNCCY	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	634
FaiI	YATR	4 cut(s)	332, 345, 468, 470
FaqI	GGGAC	2 cut(s)	85, 155
Fnu4HI	GCNGC	3 cut(s)	453, 570, 603
FokI	GGATG	4 cut(s)	350, 488, 605, 634
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	453, 570, 603
FspBI	CTAG	3 cut(s)	47, 543, 566
GlaI	GCGC	2 cut(s)	556, 626
GluI	GCNGC	3 cut(s)	453, 570, 603
GsuI	CTGGAG	1 cut(s)	242
HapII	CCGG	2 cut(s)	335, 651
HgaI	GACGC	1 cut(s)	616
HhaI	GCGC	2 cut(s)	557, 627
Hin6I	GCGC	2 cut(s)	555, 625
HinP1I	GCGC	2 cut(s)	555, 625
HinfI	GANTC	4 cut(s)	185, 503, 582, 617
HpaII	CCGG	2 cut(s)	335, 651
HphI	GGTGA	3 cut(s)	51, 122, 554
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	4 cut(s)	47, 121, 236, 395
Hpy99I	CGWCG	5 cut(s)	94, 251, 254, 257, 260
HpyAV	CCTTC	3 cut(s)	220, 242, 466
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	2 cut(s)	35, 258
HpyCH4V	TGCA	5 cut(s)	177, 375, 455, 596, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	3 cut(s)	306, 312, 573
HpySE526I	ACGT	2 cut(s)	35, 258
HspAI	GCGC	2 cut(s)	555, 625
LmnI	GCTCC	4 cut(s)	85, 150, 295, 352
Lsp1109I	GCAGC	3 cut(s)	439, 581, 614
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	3 cut(s)	47, 543, 566
MaeII	ACGT	2 cut(s)	35, 258
MaeIII	GTNAC	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	5 cut(s)	190, 363, 419, 523, 612
MlyI	GAGTC	2 cut(s)	576, 611
MmeI	TCCRAC	1 cut(s)	610
MnlI	CCTC	8 cut(s)	106, 277, 286, 343, 397, 403, 508, 561
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	1 cut(s)	366
MspI	CCGG	2 cut(s)	335, 651
MvnI	CGCG	2 cut(s)	555, 627
MwoI	GCNNNNNNNGC	1 cut(s)	602
NlaIV	GGNNCC	3 cut(s)	101, 152, 519
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 255
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	185, 503
PkrI	GCNGC	3 cut(s)	454, 571, 604
PleI	GAGTC	2 cut(s)	576, 611
PpsI	GAGTC	2 cut(s)	576, 611
PpuMI	RGGWCCY	1 cut(s)	229
PsiI	TTATAA	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	101, 152, 519
PspPI	GGNCC	3 cut(s)	99, 229, 238
PspPPI	RGGWCCY	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	3 cut(s)	453, 570, 603
Sau96I	GGNCC	3 cut(s)	99, 229, 238
SchI	GAGTC	2 cut(s)	576, 611
SduI	GDGCHC	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	3 cut(s)	99, 229, 238
Sse9I	AATT	5 cut(s)	190, 363, 419, 523, 612
SsiI	CCGC	1 cut(s)	460
SspMI	CTAG	3 cut(s)	47, 543, 566
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	2 cut(s)	38, 261
TaqI	TCGA	5 cut(s)	22, 39, 120, 396, 607
TasI	AATT	5 cut(s)	190, 363, 419, 523, 612
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	185, 503
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	362, 646
TseI	GCWGC	3 cut(s)	452, 569, 602
TspDTI	ATGAA	3 cut(s)	432, 485, 516
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	362, 646
VpaK11BI	GGWCC	3 cut(s)	99, 229, 238
XapI	RAATTY	2 cut(s)	190, 419
XbaI	TCTAGA	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	3 cut(s)	47, 543, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.