Rh3AG201200

Tumour suppressing sub-chromosomal transferable candidate 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006057
Physical Location & Seq
Reverse (-)
19836963 .. 19838167
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG201200.1

Sequence Viewer

Length: 1035 bp
ATGCAAGACAGTTTCAGCTTCCGAGTAGGCAAGACCTTCGGCTCTCTACCTGGTTCATGGTCCCTTGGAGATGAGAAAATCGATAGAAGGGAATGTAACAGGAACAATGAGAGCCCTGAACCGGAATCCGAGCTCCACCAATACCACACATACTCAACGGATGACTTCTGTAACGAGCTGGAGAATGGCCTCCTAGAATTTTTTGACGACAAGTTCTTAGTACAGGAAGAAGAACGTGGTTGGTTCGGTCAATCTTTCGAGTCTAAAGCCAACGCTAAGACTAAGCCAGATGATTATGAAGAGGAGCAGTGGGAAATTAAAACCTCTATTGGCTTAGACCTCACACTCGACTCCGAGGACGAGGAAGATGGATACGATAAATTGGCTGTTGGAATGGAAGACTCTGTAGATCGTCCTGATATGAATGAGTACGTAAACGACGACGATGAGACAGACAGTGATGAGGTTCCCAATTTGCTCAAGGGTTTCTCTGGAGACCCACTTGAAATTGGCATAAAATCGCTTTTGAAGAGGACGAGTATTGATGATCAATTAGTCTCATCTACAGTAGAAAAACGTGTTCGATTTCGAGACGATGAAGAGGAGCATGAAGGATCGAAAGATGGTTGGTCTGCAGCAGTTCCAGATTACATACGGAATCCATCAAGATATACACATTATATGTTTGATTCATCTAGTGACATGGATGACAAATCTAACGAGCAAGCCTATTTGAACTTCCGTATGCAATTTTCGAGATTGATGAAGTCAGATACTATGGAAGCCGAGGAAGTTGCTTGTATTGCAGTTTCTAAACCAGTCGCATTGGTACCAAGAAAGAAATCAACTGATGCTAGTAAGGAACTTGCGCCTTGCAGAATCATTGCGCCTTGCAGAATCAGGCCAATTGCTTTTCCAGACACTGATGATTGTGAGATGGAGGAAGATGAACCGGTGACAGGATCAAGCAGTGGACCGGAAGAGCCGGCGTGCGGAGAACTATCCCCCGCCAGTTTCGTACAAACACCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

344

Amino Acids

38.98

Weight (kDa)

4.27

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 207 - 257 1.2e-06 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 829
AccB1I GGYRCC 1 cut(s) 829
AciI CCGC 2 cut(s) 993, 1008
AclWI GGATC 2 cut(s) 622, 970
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 4 cut(s) 222, 431, 831, 1020
AfiI CCNNNNNNNGG 3 cut(s) 121, 959, 992
AflIII ACRYGT 1 cut(s) 577
AgeI ACCGGT 1 cut(s) 952
AgsI TTSAA 3 cut(s) 506, 529, 736
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 18, 133, 178, 1031
AluI AGCT 4 cut(s) 18, 133, 178, 1031
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 4 cut(s) 443, 489, 562, 585
AlwI GGATC 2 cut(s) 622, 970
AlwNI CAGNNNCTG 1 cut(s) 923
AoxI GGCC 2 cut(s) 187, 902
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 1 cut(s) 197
AsiGI ACCGGT 1 cut(s) 952
Asp718I GGTACC 1 cut(s) 829
AspLEI GCGC 2 cut(s) 871, 889
AspS9I GGNCC 2 cut(s) 60, 974
AsuHPI GGTGA 1 cut(s) 967
AvaII GGWCC 2 cut(s) 60, 974
BanI GGYRCC 1 cut(s) 829
BanII GRGCYC 2 cut(s) 116, 135
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 647
BccI CCATC 4 cut(s) 362, 617, 670, 931
BcgI CGANNNNNNTGC 4 cut(s) 19, 53, 776, 810
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 4 cut(s) 443, 489, 562, 585
BfaI CTAG 3 cut(s) 194, 696, 855
BfmI CTRYAG 3 cut(s) 405, 564, 633
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 1 cut(s) 636
BlsI GCNGC 1 cut(s) 637
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 60, 974
BmgT120I GGNCC 2 cut(s) 60, 974
BmiI GGNNCC 3 cut(s) 62, 468, 831
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 841
BpiI GAAGAC 1 cut(s) 405
BpmI CTGGAG 2 cut(s) 200, 513
BpuEI CTTGAG 1 cut(s) 464
Bsa29I ATCGAT 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 489
BsaJI CCNNGG 3 cut(s) 64, 354, 786
BsaWI WCCGGW 3 cut(s) 121, 952, 976
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 959, 992
Bse118I RCCGGY 2 cut(s) 952, 985
Bse1I ACTGG 2 cut(s) 818, 1011
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 64, 354, 786
BseGI GGATG 2 cut(s) 166, 712
BseLI CCNNNNNNNGG 3 cut(s) 121, 959, 992
BseMI GCAATG 1 cut(s) 882
BseNI ACTGG 2 cut(s) 818, 1011
BseRI GAGGAG 2 cut(s) 317, 617
BseXI GCAGC 1 cut(s) 647
BshFI GGCC 2 cut(s) 189, 904
BshNI GGYRCC 1 cut(s) 829
BshTI ACCGGT 1 cut(s) 952
BshVI ATCGAT 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 4 cut(s) 122, 953, 977, 986
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 3 cut(s) 121, 959, 992
BsmAI GTCTC 4 cut(s) 443, 489, 562, 585
BsmBI CGTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 2 cut(s) 189, 904
Bso31I GGTCTC 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 116, 135
Bsp143I GATC 4 cut(s) 409, 547, 614, 962
BspACI CCGC 2 cut(s) 993, 1008
BspANI GGCC 2 cut(s) 189, 904
BspDI ATCGAT 1 cut(s) 81
BspLI GGNNCC 3 cut(s) 62, 468, 831
BspMAI CTGCAG 1 cut(s) 637
BspPI GGATC 2 cut(s) 622, 970
BspQI GCTCTTC 1 cut(s) 975
BspT107I GGYRCC 1 cut(s) 829
BspTNI GGTCTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 882
BsrFI RCCGGY 2 cut(s) 952, 985
BsrI ACTGG 2 cut(s) 818, 1011
BssAI RCCGGY 2 cut(s) 952, 985
BssECI CCNNGG 3 cut(s) 64, 354, 786
BssMI GATC 4 cut(s) 409, 547, 614, 962
BssT1I CCWWGG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 11, 458, 568
Bst6I CTCTTC 4 cut(s) 294, 524, 594, 975
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 3 cut(s) 726, 987, 991
BstDEI CTNAG 5 cut(s) 217, 276, 282, 334, 1032
BstF5I GGATG 2 cut(s) 166, 712
BstHHI GCGC 2 cut(s) 871, 889
BstKTI GATC 4 cut(s) 412, 550, 617, 965
BstMAI GTCTC 4 cut(s) 443, 489, 562, 585
BstMBI GATC 4 cut(s) 409, 547, 614, 962
BstMWI GCNNNNNNNGC 1 cut(s) 803
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 3 cut(s) 405, 564, 633
BstSNI TACGTA 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 647
BstV2I GAAGAC 1 cut(s) 405
Bsu15I ATCGAT 1 cut(s) 81
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 2 cut(s) 189, 904
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 2 cut(s) 166, 712
BtsI GCAGTG 2 cut(s) 314, 976
BtsIMutI CAGTG 4 cut(s) 314, 463, 921, 976
Cac8I GCNNGC 3 cut(s) 726, 987, 991
CaiI CAGNNNCTG 1 cut(s) 923
CfoI GCGC 2 cut(s) 871, 889
Cfr10I RCCGGY 2 cut(s) 952, 985
Cfr13I GGNCC 2 cut(s) 60, 974
ClaI ATCGAT 1 cut(s) 81
CsiI ACCWGGT 1 cut(s) 49
Csp6I GTAC 4 cut(s) 221, 430, 830, 1019
CspAI ACCGGT 1 cut(s) 952
CviAII CATG 3 cut(s) 57, 608, 703
CviQI GTAC 4 cut(s) 221, 430, 830, 1019
DdeI CTNAG 5 cut(s) 217, 276, 282, 334, 1032
DpnI GATC 4 cut(s) 411, 549, 616, 964
DpnII GATC 4 cut(s) 409, 547, 614, 962
Eam1104I CTCTTC 4 cut(s) 294, 524, 594, 975
EarI CTCTTC 4 cut(s) 294, 524, 594, 975
Ecl136II GAGCTC 1 cut(s) 133
Eco105I TACGTA 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 64
Eco24I GRGCYC 2 cut(s) 116, 135
Eco31I GGTCTC 1 cut(s) 489
Eco47I GGWCC 2 cut(s) 60, 974
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 64
EcoT38I GRGCYC 2 cut(s) 116, 135
ErhI CCWWGG 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 585
FaeI CATG 3 cut(s) 60, 611, 706
FaqI GGGAC 1 cut(s) 46
FatI CATG 3 cut(s) 56, 607, 702
FauI CCCGC 1 cut(s) 1015
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 636
FokI GGATG 2 cut(s) 173, 719
FriOI GRGCYC 2 cut(s) 116, 135
Fsp4HI GCNGC 1 cut(s) 636
FspBI CTAG 3 cut(s) 194, 696, 855
GlaI GCGC 2 cut(s) 870, 888
GluI GCNGC 1 cut(s) 636
GsuI CTGGAG 2 cut(s) 200, 513
HaeIII GGCC 2 cut(s) 189, 904
HapII CCGG 4 cut(s) 122, 953, 977, 986
HhaI GCGC 2 cut(s) 871, 889
Hin1II CATG 3 cut(s) 60, 611, 706
Hin6I GCGC 2 cut(s) 869, 887
HinP1I GCGC 2 cut(s) 869, 887
HinfI GANTC 8 cut(s) 125, 260, 350, 401, 658, 689, 879, 897
HpaII CCGG 4 cut(s) 122, 953, 977, 986
HphI GGTGA 1 cut(s) 967
Hpy166II GTNNAC 2 cut(s) 436, 974
Hpy188I TCNGA 4 cut(s) 23, 130, 355, 772
Hpy188III TCNNGA 7 cut(s) 416, 492, 590, 644, 666, 756, 917
Hpy8I GTNNAC 2 cut(s) 436, 974
Hpy99I CGWCG 2 cut(s) 443, 446
HpyAV CCTTC 3 cut(s) 46, 81, 605
HpyCH4III ACNGT 3 cut(s) 11, 458, 568
HpyCH4IV ACGT 3 cut(s) 235, 432, 577
HpyCH4V TGCA 6 cut(s) 4, 635, 748, 806, 876, 894
HpyF10VI GCNNNNNNNGC 1 cut(s) 803
HpyF3I CTNAG 5 cut(s) 217, 276, 282, 334, 1032
HpySE526I ACGT 3 cut(s) 235, 432, 577
Hsp92II CATG 3 cut(s) 60, 611, 706
HspAI GCGC 2 cut(s) 869, 887
KpnI GGTACC 1 cut(s) 833
KroI GCCGGC 1 cut(s) 985
KroNI GCCGGC 1 cut(s) 987
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 4 cut(s) 409, 547, 614, 962
LguI GCTCTTC 1 cut(s) 975
LmnI GCTCC 3 cut(s) 138, 304, 604
Lsp1109I GCAGC 1 cut(s) 647
LweI GCATC 1 cut(s) 841
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 3 cut(s) 194, 696, 855
MaeII ACGT 3 cut(s) 235, 432, 577
MaeIII GTNAC 4 cut(s) 95, 170, 698, 955
MalI GATC 4 cut(s) 411, 549, 616, 964
MboI GATC 4 cut(s) 409, 547, 614, 962
MboII GAAGA 9 cut(s) 239, 242, 311, 377, 410, 541, 611, 956, 992
MfeI CAATTG 1 cut(s) 906
MhlI GDGCHC 2 cut(s) 116, 135
MluCI AATT 8 cut(s) 197, 315, 380, 472, 507, 551, 749, 906
MlyI GAGTC 3 cut(s) 269, 344, 395
MmeI TCCRAC 1 cut(s) 370
MroNI GCCGGC 1 cut(s) 985
MseI TTAA 1 cut(s) 318
MspI CCGG 4 cut(s) 122, 953, 977, 986
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 906
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 803
NaeI GCCGGC 1 cut(s) 987
NdeII GATC 4 cut(s) 409, 547, 614, 962
NgoMIV GCCGGC 1 cut(s) 985
NlaIII CATG 3 cut(s) 60, 611, 706
NlaIV GGNNCC 3 cut(s) 62, 468, 831
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 2 cut(s) 698, 955
PciSI GCTCTTC 1 cut(s) 975
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PdiI GCCGGC 1 cut(s) 987
PfeI GAWTC 5 cut(s) 125, 658, 689, 879, 897
PinAI ACCGGT 1 cut(s) 952
PkrI GCNGC 1 cut(s) 637
PleI GAGTC 3 cut(s) 268, 344, 395
PpsI GAGTC 3 cut(s) 268, 344, 395
Ppu21I YACGTR 1 cut(s) 433
Psp124BI GAGCTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 3 cut(s) 62, 468, 831
PspPI GGNCC 2 cut(s) 60, 974
PstI CTGCAG 1 cut(s) 637
PstNI CAGNNNCTG 1 cut(s) 923
RsaI GTAC 4 cut(s) 222, 431, 831, 1020
RsaNI GTAC 4 cut(s) 221, 430, 830, 1019
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 975
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 636
Sau3AI GATC 4 cut(s) 409, 547, 614, 962
Sau96I GGNCC 2 cut(s) 60, 974
SchI GAGTC 3 cut(s) 269, 344, 395
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 2 cut(s) 116, 135
SexAI ACCWGGT 1 cut(s) 49
SfaNI GCATC 1 cut(s) 841
SfcI CTRYAG 3 cut(s) 405, 564, 633
SinI GGWCC 2 cut(s) 60, 974
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SnaBI TACGTA 1 cut(s) 433
Sse9I AATT 8 cut(s) 197, 315, 380, 472, 507, 551, 749, 906
SsiI CCGC 2 cut(s) 993, 1008
SspMI CTAG 3 cut(s) 194, 696, 855
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 3 cut(s) 11, 458, 568
TaiI ACGT 3 cut(s) 238, 435, 580
TaqI TCGA 7 cut(s) 81, 258, 348, 583, 589, 617, 755
TaqII GACCGA 1 cut(s) 236
TasI AATT 8 cut(s) 197, 315, 380, 472, 507, 551, 749, 906
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 5 cut(s) 125, 658, 689, 879, 897
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 4 cut(s) 314, 463, 928, 976
TseFI GTSAC 2 cut(s) 698, 955
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 2 cut(s) 698, 955
TspDTI ATGAA 8 cut(s) 45, 312, 437, 612, 624, 681, 779, 963
TspGWI ACGGA 3 cut(s) 173, 670, 731
TspRI CASTG 4 cut(s) 314, 463, 928, 976
VpaK11BI GGWCC 2 cut(s) 60, 974
XapI RAATTY 1 cut(s) 197
XspI CTAG 3 cut(s) 194, 696, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.