Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

7846081 .. 7847643

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCAACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCTCAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTGGGACACTTGATGAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATTGAGAAAACAATGGATGATGGAAAAGATTATTGTCAGAGGAAGATCAACTTGCTCAAATCCAACTTTGATCAACTTTTTGAGGTCGCAGCGAAAAAGAAAAGCGTGGCAGATGAAGCTGGAATGGTCTTGCAGGCCAAAGTTAAACAGTTAACAGCTGCAACCACGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

151

Amino Acids

16.41

Weight (kDa)

5.53

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	28 - 144	1.9e-31	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	144, 147, 150
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	453
AfaI	GTAC	2 cut(s)	121, 201
AgsI	TTSAA	2 cut(s)	64, 98
AjiI	CACGTC	1 cut(s)	450
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	7 cut(s)	52, 59, 125, 155, 245, 401, 440
AluI	AGCT	7 cut(s)	52, 59, 125, 155, 245, 401, 440
Alw26I	GTCTC	2 cut(s)	110, 140
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	3 cut(s)	152, 371, 440
BbvI	GCAGC	3 cut(s)	164, 383, 427
BccI	CCATC	3 cut(s)	22, 31, 296
BcgI	CGANNNNNNTGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	110, 140
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	6 cut(s)	144, 147, 150, 153, 372, 441
BlsI	GCNGC	6 cut(s)	145, 148, 151, 154, 373, 442
Bme1390I	CCNGG	1 cut(s)	228
BmgBI	CACGTC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	130, 183
BpuEI	CTTGAG	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	277
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	2 cut(s)	114, 304
BseJI	GATNNNNATC	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	164, 383, 427
BshFI	GGCC	1 cut(s)	419
BshVI	ATCGAT	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	244
BsmAI	GTCTC	2 cut(s)	110, 140
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	419
Bsp143I	GATC	5 cut(s)	46, 76, 163, 327, 352
BspACI	CCGC	3 cut(s)	144, 147, 150
BspANI	GGCC	1 cut(s)	419
BspDI	ATCGAT	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	5 cut(s)	46, 76, 163, 327, 352
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	130, 432
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	72, 417
BstF5I	GGATG	2 cut(s)	114, 304
BstKTI	GATC	5 cut(s)	49, 79, 166, 330, 355
BstMAI	GTCTC	2 cut(s)	110, 140
BstMBI	GATC	5 cut(s)	46, 76, 163, 327, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 152, 398
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	164, 383, 427
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	419
BsuTUI	ATCGAT	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	114, 304
BtsIMutI	CAGTG	2 cut(s)	203, 270
Cac8I	GCNNGC	2 cut(s)	72, 417
ClaI	ATCGAT	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	120, 200
CviJI	RGCY	8 cut(s)	52, 59, 125, 155, 245, 401, 419, 440
CviKI_1	RGCY	8 cut(s)	52, 59, 125, 155, 245, 401, 419, 440
CviQI	GTAC	2 cut(s)	120, 200
DpnI	GATC	5 cut(s)	48, 78, 165, 329, 354
DpnII	GATC	5 cut(s)	46, 76, 163, 327, 352
DraIII	CACNNNGTG	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	140
FaiI	YATR	1 cut(s)	220
FalI	AAGNNNNNCTT	4 cut(s)	75, 107, 317, 349
FaqI	GGGAC	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	6 cut(s)	144, 147, 150, 153, 372, 441
FokI	GGATG	2 cut(s)	101, 311
Fsp4HI	GCNGC	6 cut(s)	144, 147, 150, 153, 372, 441
GluI	GCNGC	6 cut(s)	144, 147, 150, 153, 372, 441
HaeIII	GGCC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	2 cut(s)	42, 88
HpaI	GTTAAC	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	5 cut(s)	18, 80, 98, 137, 453
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	2 cut(s)	10, 454
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	130, 432
HpyCH4IV	ACGT	2 cut(s)	222, 449
HpyCH4V	TGCA	2 cut(s)	415, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 152, 398
HpySE526I	ACGT	2 cut(s)	222, 449
Hsp92I	GRCGYC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	352
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	5 cut(s)	46, 76, 163, 327, 352
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	6 cut(s)	65, 213, 240, 258, 387, 401
Lsp1109I	GCAGC	3 cut(s)	164, 383, 427
LweI	GCATC	2 cut(s)	130, 183
MaeII	ACGT	2 cut(s)	222, 449
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	5 cut(s)	48, 78, 165, 329, 354
MboI	GATC	5 cut(s)	46, 76, 163, 327, 352
MboII	GAAGA	6 cut(s)	46, 83, 86, 164, 202, 337
MflI	RGATCY	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	14, 189, 315, 358
MseI	TTAA	2 cut(s)	426, 434
MspA1I	CMGCKG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	149, 152, 398
NdeII	GATC	5 cut(s)	46, 76, 163, 327, 352
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	42, 88
PkrI	GCNGC	6 cut(s)	145, 148, 151, 154, 373, 442
Ppu21I	YACGTR	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	121, 201
RsaNI	GTAC	2 cut(s)	120, 200
SaqAI	TTAA	2 cut(s)	426, 434
SatI	GCNGC	6 cut(s)	144, 147, 150, 153, 372, 441
Sau3AI	GATC	5 cut(s)	46, 76, 163, 327, 352
ScrFI	CCNGG	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	130, 183
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SsiI	CCGC	3 cut(s)	144, 147, 150
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	130, 432
TaiI	ACGT	2 cut(s)	225, 452
TaqI	TCGA	4 cut(s)	17, 45, 138, 175
TauI	GCSGC	3 cut(s)	146, 149, 152
TfiI	GAWTC	2 cut(s)	42, 88
Tru1I	TTAA	2 cut(s)	426, 434
Tru9I	TTAA	2 cut(s)	426, 434
TscAI	CASTG	2 cut(s)	210, 277
TseI	GCWGC	3 cut(s)	152, 371, 440
TspDTI	ATGAA	3 cut(s)	255, 271, 411
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	210, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.