Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

219237 .. 220600

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1003800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAGAAGGCGGTGAGCGTGAACGTGAGAGCGGAGATGGAGAAGCTGAGCCCTGAGCAGTTGAAGGCTGTCAAAGAACAAACCGATATGGAAGTCAATCTTCTCCAGGAGTCCCTCAACAACATCCGCACTGCCACCGCCCGCCTCGAGGTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGCCCTCAGGGAAAGAAGATGCTCGTCCCCCTTACGGCGTCGCTTTATGTCCCCGGCACCCTCCACGACGCCCACCAAGTCCTGGTCGACGTCGGCACCGGCTACTTCATCGAGAAAACCATGCCTCAGGCCAAAGATTACTGCGACCGTAAGATCAACTTGCTCAAATCTAATTTTGACCAACTTGTCGAGGTTGCTTCTAAGAAGAAAAGCATCGCAGATGAAGCCGGGGCAGTTTTGCAAGCCAAAGTGAAGCAGTTGGCTGCTACAACGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

154

Amino Acids

16.79

Weight (kDa)

7.82

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	31 - 147	2.3e-30	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	368
AatII	GACGTC	1 cut(s)	276
AbsI	CCTCGAGG	1 cut(s)	146
AccB1I	GGYRCC	2 cut(s)	239, 278
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccBSI	CCGCTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	7 cut(s)	11, 32, 127, 138, 142, 162, 184
AcyI	GRCGYC	3 cut(s)	221, 252, 273
AfiI	CCNNNNNNNGG	4 cut(s)	148, 190, 217, 265
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	105, 264
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	446
AsuC2I	CCSGG	2 cut(s)	237, 412
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	146
AxyI	CCTNAGG	2 cut(s)	189, 309
BanI	GGYRCC	2 cut(s)	239, 278
BanII	GRGCYC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	2 cut(s)	107, 266
BcnI	CCSGG	2 cut(s)	237, 412
BisI	GCNGC	1 cut(s)	447
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	4 cut(s)	107, 237, 266, 412
BmeT110I	CYCGRG	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	241, 280
BmrFI	CCNGG	4 cut(s)	107, 237, 266, 412
BmsI	GCATC	2 cut(s)	192, 405
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	237, 412
BsaHI	GRCGYC	3 cut(s)	221, 252, 273
BsaJI	CCNNGG	2 cut(s)	235, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 190, 217, 265
Bse118I	RCCGGY	1 cut(s)	281
Bse21I	CCTNAGG	2 cut(s)	189, 309
BseBI	CCWGG	2 cut(s)	107, 266
BseDI	CCNNGG	2 cut(s)	235, 411
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	4 cut(s)	148, 190, 217, 265
BseMII	CTCAG	4 cut(s)	38, 45, 203, 323
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	433
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	2 cut(s)	239, 278
BsiEI	CGRYCG	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	237, 282, 411
BslFI	GGGAC	3 cut(s)	97, 194, 218
BslI	CCNNNNNNNGG	4 cut(s)	148, 190, 217, 265
BsmFI	GGGAC	3 cut(s)	97, 194, 218
BsnI	GGCC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	336
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	7 cut(s)	11, 32, 127, 138, 142, 162, 184
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	4 cut(s)	39, 46, 202, 322
BspLI	GGNNCC	2 cut(s)	241, 280
BspT107I	GGYRCC	2 cut(s)	239, 278
BsrBI	CCGCTC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	235, 411
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	3 cut(s)	221, 252, 273
Bst2UI	CCWGG	2 cut(s)	107, 266
Bst4CI	ACNGT	1 cut(s)	332
BstACI	GRCGYC	3 cut(s)	221, 252, 273
BstC8I	GCNNGC	2 cut(s)	142, 426
BstDEI	CTNAG	5 cut(s)	47, 54, 189, 309, 384
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 407
BstNI	CCWGG	2 cut(s)	107, 266
BstSCI	CCNGG	4 cut(s)	105, 235, 264, 410
BstV1I	GCAGC	1 cut(s)	433
Bsu36I	CCTNAGG	2 cut(s)	189, 309
BsuRI	GGCC	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	142, 426
Cfr10I	RCCGGY	1 cut(s)	281
CseI	GACGC	2 cut(s)	210, 260
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	8 cut(s)	46, 51, 68, 285, 314, 410, 428, 446
CviKI_1	RGCY	8 cut(s)	46, 51, 68, 285, 314, 410, 428, 446
DdeI	CTNAG	5 cut(s)	47, 54, 189, 309, 384
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
EciI	GGCGGA	2 cut(s)	151, 173
Eco24I	GRGCYC	1 cut(s)	53
Eco81I	CCTNAGG	2 cut(s)	189, 309
Eco88I	CYCGRG	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	105, 264
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	89, 231, 305, 460
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 326, 358
FaqI	GGGAC	3 cut(s)	97, 194, 218
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	447
GluI	GCNGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	3 cut(s)	237, 282, 411
HgaI	GACGC	2 cut(s)	210, 260
Hin1I	GRCGYC	3 cut(s)	221, 252, 273
Hin1II	CATG	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	3 cut(s)	237, 282, 411
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	22, 271
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	2 cut(s)	22, 271
Hpy99I	CGWCG	4 cut(s)	226, 254, 275, 278
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	3 cut(s)	24, 273, 455
HpyCH4V	TGCA	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 407
HpyF3I	CTNAG	5 cut(s)	47, 54, 189, 309, 384
HpySE526I	ACGT	3 cut(s)	24, 273, 455
Hsp92I	GRCGYC	3 cut(s)	221, 252, 273
Hsp92II	CATG	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	336
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	2 cut(s)	192, 405
MaeII	ACGT	3 cut(s)	24, 273, 455
MalI	GATC	1 cut(s)	338
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	1 cut(s)	336
MboII	GAAGA	3 cut(s)	92, 211, 400
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	119
MspI	CCGG	3 cut(s)	237, 282, 411
MspR9I	CCNGG	4 cut(s)	107, 237, 266, 412
MvaI	CCWGG	2 cut(s)	107, 266
MwoI	GCNNNNNNNGC	2 cut(s)	161, 407
NciI	CCSGG	2 cut(s)	237, 412
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	241, 280
PaeR7I	CTCGAG	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	265
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	105, 264
PspGI	CCWGG	2 cut(s)	105, 264
PspN4I	GGNNCC	2 cut(s)	241, 280
PspXI	VCTCGAGB	1 cut(s)	146
SalI	GTCGAC	1 cut(s)	269
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	1 cut(s)	336
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	4 cut(s)	107, 237, 266, 412
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	7 cut(s)	27, 48, 153, 177, 276, 378, 458
SfaNI	GCATC	2 cut(s)	192, 405
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	7 cut(s)	11, 32, 127, 138, 142, 162, 184
StyD4I	CCNGG	4 cut(s)	105, 235, 264, 410
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	3 cut(s)	27, 276, 458
TaqI	TCGA	4 cut(s)	147, 270, 294, 372
TasI	AATT	1 cut(s)	355
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	280, 420
TspRI	CASTG	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	270
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.