Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

26350003 .. 26353603

Gene Structure 3601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG241500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGACCCTAGTCCATCGAACAGTGTCGAGAGGTGTAGGAGGAAGTGCCTATTAGAGCAAGCATTCTTTTCTGAATTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAGCAAGCTAGTGTCAGACTTAAACAGTGCAAAATTGGAACCTGATGTTGTATCTTATGTGCATGTTGAAGATCGACTGAAGATGGCGATGAGCGTGAGAGAAGAGATGGAGAAGCTGAGCGTTGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCCGGAACTCTCCAGGACCCCGACCAGGTCCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAGTTTTGCAAGCAAAACTGAAGCAGATGGCTCCTACAGCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

217

Amino Acids

24.24

Weight (kDa)

6.19

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	95 - 210	1.8e-29	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	462
AciI	CCGC	6 cut(s)	319, 324, 334, 354, 411, 523
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	2 cut(s)	221, 647
AcyI	GRCGYC	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	191, 256
AjnI	CCWGG	3 cut(s)	297, 438, 450
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	4 cut(s)	130, 238, 343, 602
AluI	AGCT	4 cut(s)	130, 238, 343, 602
Alw21I	GWGCWC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	4, 442, 454
AsuC2I	CCSGG	1 cut(s)	429
AsuII	TTCGAA	1 cut(s)	552
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	3 cut(s)	4, 442, 454
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	345
BccI	CCATC	4 cut(s)	22, 199, 223, 628
BciT130I	CCWGG	3 cut(s)	299, 440, 452
BcnI	CCSGG	1 cut(s)	429
BfaI	CTAG	2 cut(s)	9, 131
BfmI	CTRYAG	1 cut(s)	642
BlpI	GCTNAGC	1 cut(s)	239
Bme1390I	CCNGG	4 cut(s)	299, 429, 440, 452
Bme18I	GGWCC	3 cut(s)	4, 442, 454
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	3 cut(s)	4, 442, 454
BmiI	GGNNCC	5 cut(s)	6, 162, 444, 472, 639
BmrFI	CCNGG	4 cut(s)	299, 429, 440, 452
BmsI	GCATC	1 cut(s)	384
BoxI	GACNNNNGTC	1 cut(s)	9
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	3 cut(s)	281, 302, 422
Bpu1102I	GCTNAGC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	486, 524
BpuMI	CCSGG	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse118I	RCCGGY	2 cut(s)	383, 473
Bse1I	ACTGG	1 cut(s)	98
BseBI	CCWGG	3 cut(s)	299, 440, 452
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	2 cut(s)	340, 527
BseYI	CCCAGC	1 cut(s)	602
Bsh1285I	CGRYCG	1 cut(s)	523
BshNI	GGYRCC	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	384, 429, 474
BslFI	GGGAC	2 cut(s)	386, 410
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmFI	GGGAC	2 cut(s)	386, 410
BsmI	GAATGC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	193, 277, 528
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	6 cut(s)	319, 324, 334, 354, 411, 523
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	5 cut(s)	6, 162, 444, 472, 639
BspT104I	TTCGAA	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	470
BsrFI	RCCGGY	2 cut(s)	383, 473
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	2 cut(s)	383, 473
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	3 cut(s)	193, 277, 528
BssNI	GRCGYC	1 cut(s)	465
Bst2UI	CCWGG	3 cut(s)	299, 440, 452
Bst4CI	ACNGT	3 cut(s)	23, 149, 651
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	465
BstBI	TTCGAA	1 cut(s)	552
BstC8I	GCNNGC	4 cut(s)	60, 128, 345, 618
BstDEI	CTNAG	2 cut(s)	239, 576
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	3 cut(s)	196, 280, 531
BstMBI	GATC	3 cut(s)	193, 277, 528
BstMCI	CGRYCG	1 cut(s)	523
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 644
BstNI	CCWGG	3 cut(s)	299, 440, 452
BstNSI	RCATGY	2 cut(s)	188, 499
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	4 cut(s)	297, 427, 438, 450
BstSFI	CTRYAG	1 cut(s)	642
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	28, 154, 267
Cac8I	GCNNGC	4 cut(s)	60, 128, 345, 618
Cfr10I	RCCGGY	2 cut(s)	383, 473
Cfr13I	GGNCC	3 cut(s)	4, 442, 454
CsiI	ACCWGGT	1 cut(s)	450
CviAII	CATG	2 cut(s)	185, 496
CviJI	RGCY	7 cut(s)	130, 238, 343, 477, 506, 602, 638
CviKI_1	RGCY	7 cut(s)	130, 238, 343, 477, 506, 602, 638
DdeI	CTNAG	2 cut(s)	239, 576
DpnI	GATC	3 cut(s)	195, 279, 530
DpnII	GATC	3 cut(s)	193, 277, 528
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	3 cut(s)	4, 442, 454
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	221, 647
Eco88I	CYCGRG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	2 cut(s)	442, 454
EcoRII	CCWGG	3 cut(s)	297, 438, 450
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	2 cut(s)	188, 499
FaiI	YATR	4 cut(s)	180, 186, 497, 590
FaqI	GGGAC	2 cut(s)	386, 410
FatI	CATG	2 cut(s)	184, 495
FauI	CCCGC	1 cut(s)	341
FblI	GTMKAC	1 cut(s)	462
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	9, 131
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	3 cut(s)	281, 302, 422
HapII	CCGG	3 cut(s)	384, 429, 474
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	2 cut(s)	188, 499
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	116, 302
HpaII	CCGG	3 cut(s)	384, 429, 474
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	4 cut(s)	73, 139, 377, 595
Hpy188III	TCNNGA	3 cut(s)	28, 281, 487
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	3 cut(s)	464, 467, 470
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	3 cut(s)	23, 149, 651
HpyCH4IV	ACGT	2 cut(s)	423, 465
HpyCH4V	TGCA	3 cut(s)	152, 184, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 644
HpyF3I	CTNAG	2 cut(s)	239, 576
HpySE526I	ACGT	2 cut(s)	423, 465
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	2 cut(s)	188, 499
Kzo9I	GATC	3 cut(s)	193, 277, 528
LmnI	GCTCC	1 cut(s)	643
LweI	GCATC	1 cut(s)	384
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	2 cut(s)	9, 131
MaeII	ACGT	2 cut(s)	423, 465
MalI	GATC	3 cut(s)	195, 279, 530
MboI	GATC	3 cut(s)	193, 277, 528
MboII	GAAGA	6 cut(s)	203, 214, 236, 284, 502, 592
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	3 cut(s)	74, 155, 547
MlyI	GAGTC	2 cut(s)	110, 296
MmeI	TCCRAC	1 cut(s)	400
MseI	TTAA	1 cut(s)	143
MspI	CCGG	3 cut(s)	384, 429, 474
MspR9I	CCNGG	4 cut(s)	299, 429, 440, 452
Mva1269I	GAATGC	1 cut(s)	62
MvaI	CCWGG	3 cut(s)	299, 440, 452
MwoI	GCNNNNNNNGC	2 cut(s)	353, 644
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	3 cut(s)	193, 277, 528
NlaIII	CATG	2 cut(s)	188, 499
NlaIV	GGNNCC	5 cut(s)	6, 162, 444, 472, 639
NspI	RCATGY	2 cut(s)	188, 499
NspV	TTCGAA	1 cut(s)	552
PaeR7I	CTCGAG	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	558
PctI	GAATGC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	452
PfoI	TCCNGGA	2 cut(s)	297, 438
PleI	GAGTC	2 cut(s)	110, 296
PpsI	GAGTC	2 cut(s)	110, 296
PpuMI	RGGWCCY	2 cut(s)	442, 454
PshAI	GACNNNNGTC	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	2 cut(s)	442, 454
Psp6I	CCWGG	3 cut(s)	297, 438, 450
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	3 cut(s)	297, 438, 450
PspN4I	GGNNCC	5 cut(s)	6, 162, 444, 472, 639
PspPI	GGNCC	3 cut(s)	4, 442, 454
PspPPI	RGGWCCY	2 cut(s)	442, 454
PspXI	VCTCGAGB	1 cut(s)	338
PsyI	GACNNNGTC	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	193, 277, 528
Sau96I	GGNCC	3 cut(s)	4, 442, 454
SchI	GAGTC	2 cut(s)	110, 296
ScrFI	CCNGG	4 cut(s)	299, 429, 440, 452
SduI	GDGCHC	1 cut(s)	345
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	384
SfcI	CTRYAG	1 cut(s)	642
Sfr274I	CTCGAG	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	552
SgrDI	CGTCGACG	1 cut(s)	461
SinI	GGWCC	3 cut(s)	4, 442, 454
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	3 cut(s)	338, 501, 539
SmoI	CTYRAG	3 cut(s)	338, 501, 539
Sse9I	AATT	3 cut(s)	74, 155, 547
SsiI	CCGC	6 cut(s)	319, 324, 334, 354, 411, 523
SspMI	CTAG	2 cut(s)	9, 131
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	4 cut(s)	297, 427, 438, 450
TaaI	ACNGT	3 cut(s)	23, 149, 651
TaiI	ACGT	2 cut(s)	426, 468
TaqI	TCGA	7 cut(s)	17, 27, 196, 339, 462, 486, 552
TasI	AATT	3 cut(s)	74, 155, 547
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	3 cut(s)	28, 154, 267
TspDTI	ATGAA	2 cut(s)	472, 612
TspRI	CASTG	3 cut(s)	28, 154, 267
Tth111I	GACNNNGTC	1 cut(s)	452
VpaK11BI	GGWCC	3 cut(s)	4, 442, 454
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	2 cut(s)	188, 499
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	2 cut(s)	9, 131
ZraI	GACGTC	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.