Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Reverse (-)

12612563 .. 12613436

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCGATGAGCGTGAGAGAAGAGATGGAGAAGTTGAGCGTGGAGCAGTTGAAGGCAGTAAAAGAGCAAAGTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATTCGCACCATGCTCGTCCCTCTTACCGCCTCCCTTTATGTCCCCGGAACTCTCCAGGACCCCGACCAGGTCTTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAGTTTTGCAAGCAAAACTGAAGCAGATGGCTCCTACAGCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

126

Amino Acids

14.12

Weight (kDa)

5.01

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	5 - 119	7.7e-23	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	2 cut(s)	138, 250
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	93, 165, 177
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	156
AsuII	TTCGAA	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	175
BccI	CCATC	2 cut(s)	19, 355
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	3 cut(s)	95, 167, 179
BcnI	CCSGG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	369
Bme1390I	CCNGG	4 cut(s)	95, 156, 167, 179
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	3 cut(s)	171, 199, 366
BmrFI	CCNGG	4 cut(s)	95, 156, 167, 179
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	3 cut(s)	77, 98, 149
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	213, 251
BpuMI	CCSGG	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	3 cut(s)	95, 167, 179
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	254
BseYI	CCCAGC	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	156, 201
BslFI	GGGAC	2 cut(s)	113, 137
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	113, 137
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	73, 255
BspACI	CCGC	2 cut(s)	138, 250
BspLI	GGNNCC	3 cut(s)	171, 199, 366
BspT104I	TTCGAA	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	73, 255
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	3 cut(s)	95, 167, 179
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	303
BstKTI	GATC	2 cut(s)	76, 258
BstMBI	GATC	2 cut(s)	73, 255
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	3 cut(s)	95, 167, 179
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	4 cut(s)	93, 154, 165, 177
BstSFI	CTRYAG	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	169
CsiI	ACCWGGT	1 cut(s)	177
CviAII	CATG	2 cut(s)	121, 223
CviJI	RGCY	4 cut(s)	204, 233, 329, 365
CviKI_1	RGCY	4 cut(s)	204, 233, 329, 365
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	75, 257
DpnII	GATC	2 cut(s)	73, 255
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	3 cut(s)	93, 165, 177
FaeI	CATG	2 cut(s)	124, 226
FaiI	YATR	4 cut(s)	122, 150, 224, 317
FaqI	GGGAC	2 cut(s)	113, 137
FatI	CATG	2 cut(s)	120, 222
FblI	GTMKAC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	3 cut(s)	77, 98, 149
HapII	CCGG	2 cut(s)	156, 201
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	124, 226
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	2 cut(s)	156, 201
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	77, 214
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	3 cut(s)	191, 194, 197
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	124, 226
Kzo9I	GATC	2 cut(s)	73, 255
LmnI	GCTCC	2 cut(s)	43, 370
MabI	ACCWGGT	1 cut(s)	177
MaeII	ACGT	1 cut(s)	192
MalI	GATC	2 cut(s)	75, 257
MboI	GATC	2 cut(s)	73, 255
MboII	GAAGA	5 cut(s)	32, 80, 175, 229, 319
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	6 cut(s)	73, 141, 151, 237, 275, 286
MspI	CCGG	2 cut(s)	156, 201
MspR9I	CCNGG	4 cut(s)	95, 156, 167, 179
MvaI	CCWGG	3 cut(s)	95, 167, 179
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	2 cut(s)	73, 255
NlaIII	CATG	2 cut(s)	124, 226
NlaIV	GGNNCC	3 cut(s)	171, 199, 366
NspI	RCATGY	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PflFI	GACNNNGTC	1 cut(s)	179
PfoI	TCCNGGA	2 cut(s)	93, 165
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	3 cut(s)	93, 165, 177
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	3 cut(s)	93, 165, 177
PspN4I	GGNNCC	3 cut(s)	171, 199, 366
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	73, 255
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	4 cut(s)	95, 156, 167, 179
SetI	ASST	5 cut(s)	84, 183, 195, 297, 331
SexAI	ACCWGGT	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	279
SgrDI	CGTCGACG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	228, 266
SmoI	CTYRAG	2 cut(s)	228, 266
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	2 cut(s)	138, 250
StyD4I	CCNGG	4 cut(s)	93, 154, 165, 177
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	3 cut(s)	189, 213, 279
TasI	AATT	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	199, 339
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	169
XceI	RCATGY	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	189
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.