Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Reverse (-)

36101171 .. 36101389

Gene Structure 219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGCGATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATATGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCACCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

72

Amino Acids

7.98

Weight (kDa)

6.56

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	115, 120, 130, 150, 207
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	34, 139
AluI	AGCT	2 cut(s)	34, 139
Alw21I	GWGCWC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	95
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	1 cut(s)	77
Bpu1102I	GCTNAGC	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse118I	RCCGGY	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	33, 136
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	5 cut(s)	115, 120, 130, 150, 207
BspCNI	CTCAG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	179
CviJI	RGCY	2 cut(s)	34, 139
CviKI_1	RGCY	2 cut(s)	34, 139
DdeI	CTNAG	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	141
FaiI	YATR	1 cut(s)	77
FaqI	GGGAC	1 cut(s)	182
FauI	CCCGC	1 cut(s)	137
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	77
HapII	CCGG	1 cut(s)	180
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	80, 107, 193
LweI	GCATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	9 cut(s)	11, 73, 143, 154, 157, 164, 173, 179, 210
MseI	TTAA	1 cut(s)	217
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
PaeR7I	CTCGAG	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	93
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspXI	VCTCGAGB	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	217
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	36, 84, 141, 146, 165
SfaNI	GCATC	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	5 cut(s)	115, 120, 130, 150, 207
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	93
TaqI	TCGA	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	217
Tru9I	TTAA	1 cut(s)	217
TscAI	CASTG	1 cut(s)	63
TspRI	CASTG	1 cut(s)	63
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.