Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

19189626 .. 19190518

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATGAGCGTGAGAGAAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAAGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCAAGCTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCCTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAGTTTTGCAAGCAAAACTGAAGCAGATGGCTCCTACAGCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

138

Amino Acids

15.44

Weight (kDa)

8.97

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	26 - 131	2.8e-19	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	6 cut(s)	112, 117, 127, 147, 204, 286
AcuI	CTGAAG	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	49
AluBI	AGCT	3 cut(s)	31, 136, 365
AluI	AGCT	3 cut(s)	31, 136, 365
AsuII	TTCGAA	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	233
BccI	CCATC	2 cut(s)	16, 391
BfmI	CTRYAG	1 cut(s)	405
BlpI	GCTNAGC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	235, 402
BmsI	GCATC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	95
Bpu1102I	GCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	4 cut(s)	116, 249, 287, 347
BsaHI	GRCGYC	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse118I	RCCGGY	2 cut(s)	176, 236
BseGI	GGATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	133, 290
BseYI	CCCAGC	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	286
BshNI	GGYRCC	1 cut(s)	233
BsiEI	CGRYCG	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	177, 237
BslFI	GGGAC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	70, 291
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	6 cut(s)	112, 117, 127, 147, 204, 286
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	235, 402
BspT104I	TTCGAA	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	233
BsrFI	RCCGGY	2 cut(s)	176, 236
BssAI	RCCGGY	2 cut(s)	176, 236
BssMI	GATC	2 cut(s)	70, 291
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	138, 381
BstDEI	CTNAG	2 cut(s)	32, 339
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	73, 294
BstMBI	GATC	2 cut(s)	70, 291
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 407
BstNSI	RCATGY	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	138, 381
Cfr10I	RCCGGY	2 cut(s)	176, 236
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	6 cut(s)	31, 136, 240, 269, 365, 401
CviKI_1	RGCY	6 cut(s)	31, 136, 240, 269, 365, 401
DdeI	CTNAG	2 cut(s)	32, 339
DpnI	GATC	2 cut(s)	72, 293
DpnII	GATC	2 cut(s)	70, 291
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	410
FaeI	CATG	1 cut(s)	262
FaiI	YATR	2 cut(s)	260, 353
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	134
FblI	GTMKAC	1 cut(s)	225
FokI	GGATG	1 cut(s)	95
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	95
HapII	CCGG	2 cut(s)	177, 237
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	177, 237
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	170, 358
Hpy188III	TCNNGA	2 cut(s)	74, 250
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	3 cut(s)	227, 230, 233
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	2 cut(s)	216, 228
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 407
HpyF3I	CTNAG	2 cut(s)	32, 339
HpySE526I	ACGT	2 cut(s)	216, 228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	70, 291
LmnI	GCTCC	2 cut(s)	40, 406
LpnPI	CCDG	4 cut(s)	59, 190, 250, 351
LweI	GCATC	1 cut(s)	177
MaeII	ACGT	2 cut(s)	216, 228
MalI	GATC	2 cut(s)	72, 293
MboI	GATC	2 cut(s)	70, 291
MboII	GAAGA	4 cut(s)	29, 77, 265, 355
MluCI	AATT	1 cut(s)	310
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	193
MspI	CCGG	2 cut(s)	177, 237
MwoI	GCNNNNNNNGC	2 cut(s)	146, 407
NdeII	GATC	2 cut(s)	70, 291
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	2 cut(s)	235, 402
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	235, 402
SalI	GTCGAC	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	70, 291
SchI	GAGTC	1 cut(s)	89
SetI	ASST	8 cut(s)	33, 81, 138, 162, 219, 231, 333, 367
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	405
SfuI	TTCGAA	1 cut(s)	315
SgrDI	CGTCGACG	1 cut(s)	224
SmlI	CTYRAG	4 cut(s)	131, 264, 302, 326
SmoI	CTYRAG	4 cut(s)	131, 264, 302, 326
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	6 cut(s)	112, 117, 127, 147, 204, 286
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	2 cut(s)	219, 231
TaqI	TCGA	3 cut(s)	225, 249, 315
TasI	AATT	1 cut(s)	310
TscAI	CASTG	1 cut(s)	60
TspDTI	ATGAA	2 cut(s)	235, 375
TspRI	CASTG	1 cut(s)	60
XceI	RCATGY	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	225
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.