Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Reverse (-)

73138914 .. 73141735

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0613400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCGATGAAGGGTGCGATTGTCTCTGCTGCTAAGGCTCTTGCCTCACCACGCAGCTCTTCCGCTTCCACCTTTTTCTCCAGGCAGCTCCACGCAACTCCGGGGAGCAAGAAGATTGTTGGGGTGTTTTATAAGGCTAATGAGTATGCCAAACTCAACCCCAATTTTTTGGGTTGTGAGGAAAACGCTTTGGGCATAAGGGACTGGCTTGAATCACAGGGACACAAGTATGTTGTTACTGATGACAAGGAGGGACCAAATTGTGAGCTTGAGAAACACATTGAGGATATGCATGTTCTGATCACAACCCCTTTCCACCCTGCCTATGTCACGGCGGAGAGGATTAAAAAGGCCAAGAATTTGCAGCTTCTTTTGACTGCCGGAATTGGCTCCGATCACATTGACCTCAAGGCTGCTGCGGCGGCTGGACTGACGGTTGCTGAGGTCACCGGAAGTAATACTGTTTCGGTTGCGGAAGATGAGCTGATGAGGATCCTCATTCTTGTGAGGAACTTTATTCCGGGGTATCAGCAGGTTGTTACTGGGGAGTGGAAGGTTGCAGCCATTTCCCACAGGGCTTATGATTTGGAAGGAAAGACAGTTGGTACTGTTGGAGCTGGAAGAATTGGCAAGCTTTTGATGCAAAGGTTGAGGCCTTTCAACTGTAATATCCTCTATCATGACAGAATTAAGGCTGATGCCGAATTTGAAAAAGAGACGGGGGCTAAGTTTGAGGAGGATCTTGATAAGATGCTTCCGAAATGTGATGTTGTTGTTGTCAACACCCCGCTAACAGAAAAGACAAGGGGGATGTTTGATAAAGAGAGAATTTCCAAGCTCAAGAAGGGAGTCCTGATCGTGAACAATGCCCGTGGGGCAATCATGGACACGCAAGCAGTTGTCGATGCTTGCAACAGTGGACACATAGCAGGATACAGTGGCGATGTTTGGAACCCCCAACCAGCTCCCCAAGACCATCCATGGCGTTACATGCCAAACCATGCCATGACCCCTCATACATCTGGCACCACAATTGATGGACAGTTGCGTTATGCTGCTGGTACCAAGGACATGCTCGACAGGTACTTCAAAGGCAAAGACTTTCCTGCTCAAAACTACATTGTCAAGGAGGGCAAGCTAGCAAGCCAGTACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

385

Amino Acids

42.41

Weight (kDa)

8.59

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	70 - 294	2.8e-15	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	163 - 341	2e-52	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	523
Acc65I	GGTACC	1 cut(s)	1061
AccB1I	GGYRCC	2 cut(s)	1025, 1061
AciI	CCGC	6 cut(s)	63, 335, 419, 422, 473, 788
AclWI	GGATC	3 cut(s)	487, 500, 747
AcsI	RAATTY	3 cut(s)	358, 704, 828
AfaI	GTAC	4 cut(s)	607, 1063, 1085, 1151
AgsI	TTSAA	4 cut(s)	212, 661, 710, 1090
AjnI	CCWGG	1 cut(s)	80
Alw26I	GTCTC	2 cut(s)	28, 710
AlwI	GGATC	3 cut(s)	487, 500, 747
AoxI	GGCC	2 cut(s)	351, 653
ApeKI	GCWGC	8 cut(s)	29, 54, 85, 364, 413, 416, 560, 1055
ApoI	RAATTY	3 cut(s)	358, 704, 828
Asp718I	GGTACC	1 cut(s)	1061
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	2 cut(s)	102, 522
AsuHPI	GGTGA	2 cut(s)	39, 439
AsuNHI	GCTAGC	1 cut(s)	1138
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	492
BanI	GGYRCC	2 cut(s)	1025, 1061
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	8 cut(s)	16, 66, 97, 376, 400, 403, 572, 1042
BccI	CCATC	2 cut(s)	984, 1031
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	1 cut(s)	82
BciVI	GTATCC	1 cut(s)	926
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	102, 522
BcoDI	GTCTC	2 cut(s)	28, 710
BfaI	CTAG	1 cut(s)	1139
BfuAI	ACCTGC	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	926
BglI	GCCNNNNNGGC	1 cut(s)	875
Bme1390I	CCNGG	3 cut(s)	82, 102, 522
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	6 cut(s)	255, 391, 494, 953, 1027, 1063
BmrFI	CCNGG	3 cut(s)	82, 102, 522
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	4 cut(s)	630, 688, 741, 895
BmtI	GCTAGC	1 cut(s)	1142
BmuI	ACTGGG	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	64
Bpu10I	CCTNAGC	2 cut(s)	33, 441
BpuEI	CTTGAG	3 cut(s)	290, 392, 824
BpuMI	CCSGG	2 cut(s)	102, 522
BsaBI	GATNNNNATC	1 cut(s)	491
BsaJI	CCNNGG	5 cut(s)	101, 521, 871, 980, 1065
BsaWI	WCCGGW	1 cut(s)	449
Bse1I	ACTGG	4 cut(s)	209, 547, 1147, 1153
Bse8I	GATNNNNATC	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	5 cut(s)	101, 521, 871, 980, 1065
BseGI	GGATG	2 cut(s)	816, 976
BseJI	GATNNNNATC	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	4 cut(s)	209, 547, 1147, 1153
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	8 cut(s)	16, 66, 97, 376, 400, 403, 572, 1042
BshFI	GGCC	2 cut(s)	353, 655
BshNI	GGYRCC	2 cut(s)	1025, 1061
BsiSI	CCGG	4 cut(s)	101, 381, 450, 521
BslFI	GGGAC	3 cut(s)	215, 234, 267
BsmAI	GTCTC	2 cut(s)	28, 710
BsmBI	CGTCTC	1 cut(s)	710
BsmFI	GGGAC	3 cut(s)	215, 234, 267
BsnI	GGCC	2 cut(s)	353, 655
Bsp143I	GATC	5 cut(s)	300, 394, 492, 739, 855
Bsp19I	CCATGG	1 cut(s)	980
BspACI	CCGC	6 cut(s)	63, 335, 419, 422, 473, 788
BspANI	GGCC	2 cut(s)	353, 655
BspCNI	CTCAG	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	6 cut(s)	255, 391, 494, 953, 1027, 1063
BspMI	ACCTGC	1 cut(s)	523
BspOI	GCTAGC	1 cut(s)	1142
BspPI	GGATC	3 cut(s)	487, 500, 747
BspQI	GCTCTTC	1 cut(s)	64
BspT107I	GGYRCC	2 cut(s)	1025, 1061
BsrI	ACTGG	4 cut(s)	209, 547, 1147, 1153
BssECI	CCNNGG	5 cut(s)	101, 521, 871, 980, 1065
BssMI	GATC	5 cut(s)	300, 394, 492, 739, 855
BssT1I	CCWWGG	2 cut(s)	980, 1065
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	8 cut(s)	436, 463, 601, 610, 665, 917, 938, 1044
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	6 cut(s)	632, 894, 910, 1136, 1140, 1144
BstDEI	CTNAG	3 cut(s)	33, 441, 726
BstDSI	CCRYGG	2 cut(s)	871, 980
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	2 cut(s)	816, 976
BstKTI	GATC	5 cut(s)	303, 397, 495, 742, 858
BstMAI	GTCTC	2 cut(s)	28, 710
BstMBI	GATC	5 cut(s)	300, 394, 492, 739, 855
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 419, 422, 640, 875, 991
BstNI	CCWGG	1 cut(s)	82
BstNSI	RCATGY	3 cut(s)	296, 994, 1075
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	3 cut(s)	80, 100, 520
BstV1I	GCAGC	8 cut(s)	16, 66, 97, 376, 400, 403, 572, 1042
BstX2I	RGATCY	2 cut(s)	492, 739
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	2 cut(s)	492, 739
BsuI	GTATCC	1 cut(s)	926
BsuRI	GGCC	2 cut(s)	353, 655
BtgI	CCRYGG	2 cut(s)	871, 980
BtgZI	GCGATG	2 cut(s)	20, 957
BtsCI	GGATG	2 cut(s)	816, 976
BtsIMutI	CAGTG	2 cut(s)	922, 943
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	6 cut(s)	632, 894, 910, 1136, 1140, 1144
CciI	TCATGA	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	4 cut(s)	606, 1062, 1084, 1150
CspCI	CAANNNNNGTGG	2 cut(s)	853, 888
CviAII	CATG	8 cut(s)	293, 680, 883, 981, 991, 1001, 1006, 1072
CviQI	GTAC	4 cut(s)	606, 1062, 1084, 1150
DdeI	CTNAG	3 cut(s)	33, 441, 726
DpnI	GATC	5 cut(s)	302, 396, 494, 741, 857
DpnII	GATC	5 cut(s)	300, 394, 492, 739, 855
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	980, 1065
Eco147I	AGGCCT	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	80
EcoT14I	CCWWGG	2 cut(s)	980, 1065
EcoT22I	ATGCAT	1 cut(s)	294
ErhI	CCWWGG	2 cut(s)	980, 1065
Esp3I	CGTCTC	1 cut(s)	710
FaeI	CATG	8 cut(s)	296, 683, 886, 984, 994, 1004, 1009, 1075
FaqI	GGGAC	3 cut(s)	215, 234, 267
FatI	CATG	8 cut(s)	292, 679, 882, 980, 990, 1000, 1005, 1071
FauI	CCCGC	1 cut(s)	795
FbaI	TGATCA	1 cut(s)	300
FokI	GGATG	2 cut(s)	823, 963
FspBI	CTAG	1 cut(s)	1139
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	353, 655
HapII	CCGG	4 cut(s)	101, 381, 450, 521
Hin1II	CATG	8 cut(s)	296, 683, 886, 984, 994, 1004, 1009, 1075
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	2 cut(s)	212, 849
HpaII	CCGG	4 cut(s)	101, 381, 450, 521
HphI	GGTGA	2 cut(s)	39, 439
Hpy166II	GTNNAC	3 cut(s)	781, 862, 920
Hpy188I	TCNGA	3 cut(s)	300, 394, 759
Hpy188III	TCNNGA	5 cut(s)	680, 743, 841, 853, 859
Hpy8I	GTNNAC	3 cut(s)	781, 862, 920
HpyAV	CCTTC	4 cut(s)	4, 547, 584, 838
HpyCH4III	ACNGT	8 cut(s)	436, 463, 601, 610, 665, 917, 938, 1044
HpyCH4V	TGCA	5 cut(s)	292, 364, 560, 643, 912
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 419, 422, 640, 875, 991
HpyF3I	CTNAG	3 cut(s)	33, 441, 726
Hsp92II	CATG	8 cut(s)	296, 683, 886, 984, 994, 1004, 1009, 1075
KpnI	GGTACC	1 cut(s)	1065
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	300, 394, 492, 739, 855
LguI	GCTCTTC	1 cut(s)	64
LmnI	GCTCC	5 cut(s)	93, 105, 395, 614, 970
Lsp1109I	GCAGC	8 cut(s)	16, 66, 97, 376, 400, 403, 572, 1042
LweI	GCATC	4 cut(s)	630, 688, 741, 895
MaeI	CTAG	1 cut(s)	1139
MaeIII	GTNAC	5 cut(s)	235, 328, 445, 538, 986
MalI	GATC	5 cut(s)	302, 396, 494, 741, 857
MboI	GATC	5 cut(s)	300, 394, 492, 739, 855
MboII	GAAGA	4 cut(s)	51, 124, 488, 633
MfeI	CAATTG	1 cut(s)	1032
MflI	RGATCY	2 cut(s)	492, 739
MluCI	AATT	9 cut(s)	163, 259, 358, 384, 624, 687, 704, 828, 1032
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	1 cut(s)	592
Mph1103I	ATGCAT	1 cut(s)	294
MseI	TTAA	2 cut(s)	345, 690
MslI	CAYNNNNRTG	2 cut(s)	228, 503
MspI	CCGG	4 cut(s)	101, 381, 450, 521
MspR9I	CCNGG	3 cut(s)	82, 102, 522
MunI	CAATTG	1 cut(s)	1032
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	6 cut(s)	35, 419, 422, 640, 875, 991
NciI	CCSGG	2 cut(s)	102, 522
NcoI	CCATGG	1 cut(s)	980
NdeII	GATC	5 cut(s)	300, 394, 492, 739, 855
NheI	GCTAGC	1 cut(s)	1138
NlaIII	CATG	8 cut(s)	296, 683, 886, 984, 994, 1004, 1009, 1075
NlaIV	GGNNCC	6 cut(s)	255, 391, 494, 953, 1027, 1063
NmuCI	GTSAC	2 cut(s)	328, 445
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	3 cut(s)	296, 994, 1075
PagI	TCATGA	1 cut(s)	679
PceI	AGGCCT	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PsiI	TTATAA	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	80
PspEI	GGTNACC	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	6 cut(s)	255, 391, 494, 953, 1027, 1063
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	492, 739
RsaI	GTAC	4 cut(s)	607, 1063, 1085, 1151
RsaNI	GTAC	4 cut(s)	606, 1062, 1084, 1150
RseI	CAYNNNNRTG	2 cut(s)	228, 503
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	345, 690
Sau3AI	GATC	5 cut(s)	300, 394, 492, 739, 855
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	3 cut(s)	82, 102, 522
SfaNI	GCATC	4 cut(s)	630, 688, 741, 895
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	228, 503
SmlI	CTYRAG	3 cut(s)	269, 407, 839
SmoI	CTYRAG	3 cut(s)	269, 407, 839
Sse9I	AATT	9 cut(s)	163, 259, 358, 384, 624, 687, 704, 828, 1032
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	6 cut(s)	63, 335, 419, 422, 473, 788
SspMI	CTAG	1 cut(s)	1139
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	3 cut(s)	80, 100, 520
StyI	CCWWGG	2 cut(s)	980, 1065
TaaI	ACNGT	8 cut(s)	436, 463, 601, 610, 665, 917, 938, 1044
TaqI	TCGA	2 cut(s)	903, 1077
TasI	AATT	9 cut(s)	163, 259, 358, 384, 624, 687, 704, 828, 1032
TauI	GCSGC	2 cut(s)	422, 425
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	345, 690
Tru9I	TTAA	2 cut(s)	345, 690
TscAI	CASTG	2 cut(s)	922, 943
TseFI	GTSAC	2 cut(s)	328, 445
TseI	GCWGC	8 cut(s)	29, 54, 85, 364, 413, 416, 560, 1055
Tsp45I	GTSAC	2 cut(s)	328, 445
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	922, 943
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	3 cut(s)	358, 704, 828
XceI	RCATGY	3 cut(s)	296, 994, 1075
XspI	CTAG	1 cut(s)	1139
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.