Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Reverse (-)

234304 .. 235821

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1003600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGAAGGAGAAGGCGGTGAGCGTGAACGTGAGAGCGGAGATGGAGAAGCTGAGCCCTGAGCAGTTGAAGGCCGTCAAAGAACAAACCGATTTGGAAGTCAATCTTCTCCAGGACTCCCTCAACAACATCCGCACTGCCACCGCCCGCCTCGAGATCGCCACCTCCGCCCTCCACGACCTCTCCCTCCGCCCTCAGGGAAAGAAGATGCTCGTCCCCCTTACGGCGTCGCTTTACGTCCCCGGCACCCTCCACGACGCCCACCAAGTCCTGGTCGACGTTGGCACCGGCTACTTCATCGAGAAAACCATGCCTCAGGCCAAAGATTACTGCGAACGTAAGATCAGCTTGCTCAAATCTAATTTTGACCAACTTGTCGAGGTTGCTTCTAAAAAGAAAAGCATTGCAGATGAAGCCGGGGCAGTTTTGCAAGCCAAAGTGAAGCAGTTGGCTGCTACGACGTCGCAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

158

Amino Acids

17.22

Weight (kDa)

7.81

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	33 - 149	4.3e-30	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AatII	GACGTC	1 cut(s)	464
AccB1I	GGYRCC	2 cut(s)	245, 284
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	7 cut(s)	17, 38, 133, 144, 148, 168, 190
AcyI	GRCGYC	3 cut(s)	227, 258, 461
AfiI	CCNNNNNNNGG	3 cut(s)	196, 223, 271
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	111, 270
AluBI	AGCT	2 cut(s)	52, 348
AluI	AGCT	2 cut(s)	52, 348
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	72, 318
ApeKI	GCWGC	1 cut(s)	452
AsuC2I	CCSGG	2 cut(s)	243, 418
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	152
AxyI	CCTNAGG	2 cut(s)	195, 315
BanI	GGYRCC	2 cut(s)	245, 284
BanII	GRGCYC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	2 cut(s)	59, 240
BciT130I	CCWGG	2 cut(s)	113, 272
BcnI	CCSGG	2 cut(s)	243, 418
BisI	GCNGC	1 cut(s)	453
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	4 cut(s)	113, 243, 272, 418
BmeT110I	CYCGRG	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	247, 286
BmrFI	CCNGG	4 cut(s)	113, 243, 272, 418
BmsI	GCATC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	243, 418
BsaHI	GRCGYC	3 cut(s)	227, 258, 461
BsaJI	CCNNGG	2 cut(s)	241, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 223, 271
Bse118I	RCCGGY	1 cut(s)	287
Bse21I	CCTNAGG	2 cut(s)	195, 315
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	113, 272
BseDI	CCNNGG	2 cut(s)	241, 417
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	196, 223, 271
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	4 cut(s)	44, 51, 209, 329
BseXI	GCAGC	1 cut(s)	439
BshFI	GGCC	2 cut(s)	74, 320
BshNI	GGYRCC	2 cut(s)	245, 284
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	243, 288, 417
BslFI	GGGAC	2 cut(s)	200, 224
BslI	CCNNNNNNNGG	3 cut(s)	196, 223, 271
BsmFI	GGGAC	2 cut(s)	200, 224
BsnI	GGCC	2 cut(s)	74, 320
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	156, 342
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	7 cut(s)	17, 38, 133, 144, 148, 168, 190
BspANI	GGCC	2 cut(s)	74, 320
BspCNI	CTCAG	4 cut(s)	45, 52, 208, 328
BspLI	GGNNCC	2 cut(s)	247, 286
BspT107I	GGYRCC	2 cut(s)	245, 284
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	241, 417
BssMI	GATC	2 cut(s)	156, 342
BssNI	GRCGYC	3 cut(s)	227, 258, 461
Bst2UI	CCWGG	2 cut(s)	113, 272
BstACI	GRCGYC	3 cut(s)	227, 258, 461
BstC8I	GCNNGC	3 cut(s)	148, 350, 432
BstDEI	CTNAG	4 cut(s)	53, 60, 195, 315
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	2 cut(s)	159, 345
BstMBI	GATC	2 cut(s)	156, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 413
BstNI	CCWGG	2 cut(s)	113, 272
BstSCI	CCNGG	4 cut(s)	111, 241, 270, 416
BstV1I	GCAGC	1 cut(s)	439
Bsu36I	CCTNAGG	2 cut(s)	195, 315
BsuRI	GGCC	2 cut(s)	74, 320
BtsCI	GGATG	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	148, 350, 432
Cfr10I	RCCGGY	1 cut(s)	287
CseI	GACGC	2 cut(s)	216, 266
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	9 cut(s)	52, 57, 74, 291, 320, 348, 416, 434, 452
CviKI_1	RGCY	9 cut(s)	52, 57, 74, 291, 320, 348, 416, 434, 452
DdeI	CTNAG	4 cut(s)	53, 60, 195, 315
DpnI	GATC	2 cut(s)	158, 344
DpnII	GATC	2 cut(s)	156, 342
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EciI	GGCGGA	2 cut(s)	157, 179
Eco24I	GRGCYC	1 cut(s)	59
Eco81I	CCTNAGG	2 cut(s)	195, 315
Eco88I	CYCGRG	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	111, 270
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	1 cut(s)	313
FaiI	YATR	1 cut(s)	311
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 332, 364
FaqI	GGGAC	2 cut(s)	200, 224
FatI	CATG	1 cut(s)	309
FauI	CCCGC	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	453
GluI	GCNGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	74, 320
HapII	CCGG	3 cut(s)	243, 288, 417
HgaI	GACGC	2 cut(s)	216, 266
Hin1I	GRCGYC	3 cut(s)	227, 258, 461
Hin1II	CATG	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	3 cut(s)	243, 288, 417
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	28, 277
Hpy188III	TCNNGA	2 cut(s)	154, 301
Hpy8I	GTNNAC	2 cut(s)	28, 277
Hpy99I	CGWCG	5 cut(s)	232, 260, 281, 463, 466
HpyAV	CCTTC	2 cut(s)	7, 64
HpyCH4IV	ACGT	5 cut(s)	30, 237, 279, 337, 461
HpyCH4V	TGCA	2 cut(s)	407, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 413
HpyF3I	CTNAG	4 cut(s)	53, 60, 195, 315
HpySE526I	ACGT	5 cut(s)	30, 237, 279, 337, 461
Hsp92I	GRCGYC	3 cut(s)	227, 258, 461
Hsp92II	CATG	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	156, 342
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	5 cut(s)	30, 237, 279, 337, 461
MalI	GATC	2 cut(s)	158, 344
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	2 cut(s)	156, 342
MboII	GAAGA	2 cut(s)	98, 217
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	110
MspI	CCGG	3 cut(s)	243, 288, 417
MspR9I	CCNGG	4 cut(s)	113, 243, 272, 418
MvaI	CCWGG	2 cut(s)	113, 272
MwoI	GCNNNNNNNGC	2 cut(s)	167, 413
NciI	CCSGG	2 cut(s)	243, 418
NdeII	GATC	2 cut(s)	156, 342
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	2 cut(s)	247, 286
PaeR7I	CTCGAG	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	111, 270
PspGI	CCWGG	2 cut(s)	111, 270
PspN4I	GGNNCC	2 cut(s)	247, 286
SalI	GTCGAC	1 cut(s)	275
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	2 cut(s)	156, 342
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	4 cut(s)	113, 243, 272, 418
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	198
Sfr274I	CTCGAG	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	7 cut(s)	17, 38, 133, 144, 148, 168, 190
StyD4I	CCNGG	4 cut(s)	111, 241, 270, 416
TaiI	ACGT	5 cut(s)	33, 240, 282, 340, 464
TaqI	TCGA	4 cut(s)	153, 276, 300, 378
TasI	AATT	1 cut(s)	361
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	286, 426
TspRI	CASTG	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	276
ZraI	GACGTC	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.