Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

9483973 .. 9485531

Gene Structure 1559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG064400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAGCAAGCTAGTGTCAGACTTAAACAGTGCAAAATTGGAACCTGATGTTGTATCTTATGTGCATGTTGAAGATCGACTGAAGATGGCGATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTTCCTTTACGTCCCCGGAACTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

122

Amino Acids

13.54

Weight (kDa)

6.73

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	71 - 121	1.1e-06	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	247, 252, 262, 282, 339
AcuI	CTGAAG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	119, 184
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	58, 166, 271
AluI	AGCT	3 cut(s)	58, 166, 271
Alw21I	GWGCWC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	357
AvaI	CYCGRG	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	2 cut(s)	127, 151
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	1 cut(s)	357
BfaI	CTAG	2 cut(s)	59, 367
BlpI	GCTNAGC	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	227, 357
BmeT110I	CYCGRG	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	227, 357
BmsI	GCATC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	2 cut(s)	209, 230
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	165, 268
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	312, 357
BslFI	GGGAC	2 cut(s)	314, 338
BsmFI	GGGAC	2 cut(s)	314, 338
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	121, 205
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	5 cut(s)	247, 252, 262, 282, 339
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	121, 205
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	56, 273
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	124, 208
BstMBI	GATC	2 cut(s)	121, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	225, 355
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	82, 195
Cac8I	GCNNGC	2 cut(s)	56, 273
Cfr10I	RCCGGY	1 cut(s)	311
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	3 cut(s)	58, 166, 271
CviKI_1	RGCY	3 cut(s)	58, 166, 271
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	123, 207
DpnII	GATC	2 cut(s)	121, 205
EciI	GGCGGA	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	1 cut(s)	116
FaiI	YATR	2 cut(s)	108, 114
FaqI	GGGAC	2 cut(s)	314, 338
FatI	CATG	1 cut(s)	112
FauI	CCCGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	59, 367
GsuI	CTGGAG	2 cut(s)	209, 230
HapII	CCGG	2 cut(s)	312, 357
Hin1II	CATG	1 cut(s)	116
HinfI	GANTC	2 cut(s)	44, 230
HpaII	CCGG	2 cut(s)	312, 357
Hpy188I	TCNGA	2 cut(s)	67, 305
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	178, 352
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	80, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	116
Kzo9I	GATC	2 cut(s)	121, 205
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	6 cut(s)	7, 105, 194, 212, 239, 325
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	2 cut(s)	59, 367
MaeII	ACGT	1 cut(s)	351
MalI	GATC	2 cut(s)	123, 207
MboI	GATC	2 cut(s)	121, 205
MboII	GAAGA	3 cut(s)	131, 142, 212
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	38, 224
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	9 cut(s)	143, 205, 275, 286, 289, 296, 305, 311, 342
MseI	TTAA	1 cut(s)	71
MspI	CCGG	2 cut(s)	312, 357
MspR9I	CCNGG	2 cut(s)	227, 357
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	2 cut(s)	121, 205
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	225
PleI	GAGTC	2 cut(s)	38, 224
PpsI	GAGTC	2 cut(s)	38, 224
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	90
PspXI	VCTCGAGB	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	121, 205
SchI	GAGTC	2 cut(s)	38, 224
ScrFI	CCNGG	2 cut(s)	227, 357
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	7 cut(s)	60, 94, 168, 216, 273, 297, 354
SfaNI	GCATC	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	5 cut(s)	247, 252, 262, 282, 339
SspMI	CTAG	2 cut(s)	59, 367
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	225, 355
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	124, 267
TasI	AATT	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	2 cut(s)	82, 195
TspRI	CASTG	2 cut(s)	82, 195
XceI	RCATGY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	266
XspI	CTAG	2 cut(s)	59, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.