Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

5128149 .. 5130361

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAACAAGCTAGTGTTAGACTTAAACAATGCAAAATTGGAACCTGATGTTGTATCTTATGTGCATGTTGAAGATCGACTGAAGATGGCGATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCATGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCTCACCGCCACCACCCGCCTGGAGCTCACCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCCGGAACTCTCCAGGACCCCGACCAGGTCCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTACTTTTGCAAGCAAAACTGAAGCAGATGGCTCCTACAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

192

Amino Acids

21.37

Weight (kDa)

6.16

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	71 - 186	4.2e-29	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	5 cut(s)	252, 262, 282, 339, 451
AcuI	CTGAAG	2 cut(s)	149, 575
AcyI	GRCGYC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	119, 184
AjnI	CCWGG	4 cut(s)	225, 264, 366, 378
AluBI	AGCT	4 cut(s)	58, 166, 271, 530
AluI	AGCT	4 cut(s)	58, 166, 271, 530
Alw21I	GWGCWC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	370, 382
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	241, 265
AsuII	TTCGAA	1 cut(s)	480
AvaII	GGWCC	2 cut(s)	370, 382
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	273
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	3 cut(s)	127, 151, 556
BciT130I	CCWGG	4 cut(s)	227, 266, 368, 380
BcnI	CCSGG	1 cut(s)	357
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	570
BlpI	GCTNAGC	1 cut(s)	167
Bme1390I	CCNGG	5 cut(s)	227, 266, 357, 368, 380
Bme18I	GGWCC	2 cut(s)	370, 382
BmgT120I	GGNCC	2 cut(s)	370, 382
BmiI	GGNNCC	4 cut(s)	90, 372, 400, 567
BmrFI	CCNGG	5 cut(s)	227, 266, 357, 368, 380
BmsI	GCATC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	4 cut(s)	209, 230, 287, 350
Bpu1102I	GCTNAGC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	414, 452
BpuMI	CCSGG	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse118I	RCCGGY	2 cut(s)	311, 401
Bse1I	ACTGG	1 cut(s)	26
BseBI	CCWGG	4 cut(s)	227, 266, 368, 380
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	3 cut(s)	165, 268, 455
BseYI	CCCAGC	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	312, 357, 402
BslFI	GGGAC	2 cut(s)	314, 338
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	314, 338
Bsp119I	TTCGAA	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	121, 205, 456
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	5 cut(s)	252, 262, 282, 339, 451
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	4 cut(s)	90, 372, 400, 567
BspT104I	TTCGAA	1 cut(s)	480
BspT107I	GGYRCC	1 cut(s)	398
BsrFI	RCCGGY	2 cut(s)	311, 401
BsrI	ACTGG	1 cut(s)	26
BssAI	RCCGGY	2 cut(s)	311, 401
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	3 cut(s)	121, 205, 456
BssNI	GRCGYC	1 cut(s)	393
Bst2UI	CCWGG	4 cut(s)	227, 266, 368, 380
BstACI	GRCGYC	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	167, 504
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	3 cut(s)	124, 208, 459
BstMBI	GATC	3 cut(s)	121, 205, 456
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	4 cut(s)	227, 266, 368, 380
BstNSI	RCATGY	2 cut(s)	116, 427
BstSCI	CCNGG	5 cut(s)	225, 264, 355, 366, 378
BstSFI	CTRYAG	1 cut(s)	570
BstXI	CCANNNNNNTGG	1 cut(s)	265
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	546
Cfr10I	RCCGGY	2 cut(s)	311, 401
Cfr13I	GGNCC	2 cut(s)	370, 382
CsiI	ACCWGGT	1 cut(s)	378
CviAII	CATG	3 cut(s)	113, 172, 424
CviJI	RGCY	7 cut(s)	58, 166, 271, 405, 434, 530, 566
CviKI_1	RGCY	7 cut(s)	58, 166, 271, 405, 434, 530, 566
DdeI	CTNAG	2 cut(s)	167, 504
DpnI	GATC	3 cut(s)	123, 207, 458
DpnII	GATC	3 cut(s)	121, 205, 456
EciI	GGCGGA	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	370, 382
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	149, 575
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	370, 382
EcoRII	CCWGG	4 cut(s)	225, 264, 366, 378
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	3 cut(s)	116, 175, 427
FaiI	YATR	6 cut(s)	108, 114, 173, 425, 518, 577
FaqI	GGGAC	2 cut(s)	314, 338
FatI	CATG	3 cut(s)	112, 171, 423
FauI	CCCGC	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	390
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	4 cut(s)	209, 230, 287, 350
HapII	CCGG	3 cut(s)	312, 357, 402
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	3 cut(s)	116, 175, 427
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	44, 230
HpaII	CCGG	3 cut(s)	312, 357, 402
HphI	GGTGA	2 cut(s)	241, 265
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	305, 523
Hpy188III	TCNNGA	2 cut(s)	209, 415
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	3 cut(s)	392, 395, 398
HpyAV	CCTTC	1 cut(s)	178
HpyCH4IV	ACGT	2 cut(s)	351, 393
HpyCH4V	TGCA	3 cut(s)	80, 112, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	167, 504
HpySE526I	ACGT	2 cut(s)	351, 393
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	116, 175, 427
Kzo9I	GATC	3 cut(s)	121, 205, 456
LmnI	GCTCC	3 cut(s)	175, 268, 571
LweI	GCATC	1 cut(s)	312
MabI	ACCWGGT	1 cut(s)	378
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	351, 393
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	3 cut(s)	123, 207, 458
MboI	GATC	3 cut(s)	121, 205, 456
MboII	GAAGA	5 cut(s)	131, 142, 212, 430, 520
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	83, 475
MlyI	GAGTC	2 cut(s)	38, 224
MmeI	TCCRAC	1 cut(s)	328
MseI	TTAA	1 cut(s)	71
MspI	CCGG	3 cut(s)	312, 357, 402
MspR9I	CCNGG	5 cut(s)	227, 266, 357, 368, 380
MvaI	CCWGG	4 cut(s)	227, 266, 368, 380
MwoI	GCNNNNNNNGC	1 cut(s)	572
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	3 cut(s)	121, 205, 456
NlaIII	CATG	3 cut(s)	116, 175, 427
NlaIV	GGNNCC	4 cut(s)	90, 372, 400, 567
NspI	RCATGY	2 cut(s)	116, 427
NspV	TTCGAA	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PflFI	GACNNNGTC	1 cut(s)	380
PfoI	TCCNGGA	2 cut(s)	225, 366
PleI	GAGTC	2 cut(s)	38, 224
PpsI	GAGTC	2 cut(s)	38, 224
PpuMI	RGGWCCY	2 cut(s)	370, 382
Psp124BI	GAGCTC	1 cut(s)	273
Psp5II	RGGWCCY	2 cut(s)	370, 382
Psp6I	CCWGG	4 cut(s)	225, 264, 366, 378
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	4 cut(s)	225, 264, 366, 378
PspN4I	GGNNCC	4 cut(s)	90, 372, 400, 567
PspPI	GGNCC	2 cut(s)	370, 382
PspPPI	RGGWCCY	2 cut(s)	370, 382
PsyI	GACNNNGTC	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	71
Sau3AI	GATC	3 cut(s)	121, 205, 456
Sau96I	GGNCC	2 cut(s)	370, 382
SchI	GAGTC	2 cut(s)	38, 224
ScrFI	CCNGG	5 cut(s)	227, 266, 357, 368, 380
SduI	GDGCHC	1 cut(s)	273
SexAI	ACCWGGT	1 cut(s)	378
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	480
SgrDI	CGTCGACG	1 cut(s)	389
SinI	GGWCC	2 cut(s)	370, 382
SmlI	CTYRAG	2 cut(s)	429, 467
SmoI	CTYRAG	2 cut(s)	429, 467
Sse9I	AATT	2 cut(s)	83, 475
SsiI	CCGC	5 cut(s)	252, 262, 282, 339, 451
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	5 cut(s)	225, 264, 355, 366, 378
TaiI	ACGT	2 cut(s)	354, 396
TaqI	TCGA	4 cut(s)	124, 390, 414, 480
TasI	AATT	2 cut(s)	83, 475
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	195
TspDTI	ATGAA	2 cut(s)	400, 540
TspRI	CASTG	1 cut(s)	195
Tth111I	GACNNNGTC	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	370, 382
XceI	RCATGY	2 cut(s)	116, 427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.